Difference between revisions of "NONHSAT127850"

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sequence = <dnaseq>TGGGAGAAGGACTAAATGGCCTAGAAGAGGGATCACACATAATGAGGTACAATTGTCTGCTTATACAGACTTGCTGGAGCATAATAGTTCCACAAAGACCATTCTCCAAATAGTGAACCCAGAAGCCTTCACTTATGACTTCAATAAAAATTCaccaatggaacagaatagatagcccagaaataatgccacacacctacaaccatctgatcttccacaaaatcaacaaaaacaagcaatggggaaaggactccctattcaatgattggtgctggaataactggctagccatatgcagaagattgaaactggaccccttccttacaccatatacatgaatcaacctaagatggatcaaagacttaaatgtaaagcctaaaactataaaaactctcgaggataacatagaaaataccattctggatataggacctggcaaatatttcatgatgaagacaccaaaaccaactgcaacaaaaacaaaaattgacaaatgggactggattaaagaaagaacttctgcacagcaaaagaaactctcaacagtgtaaacagacaacctgcagaatgggagaaaatttttgcaaactatgcatccaacaaaggccctctaatatccagaatctatgaggaacttaaacaaatttacaaccgagaaacaaacaacctcattaaaaagtgggcaaaggacatgaacagacacttttcaaaaaaagcatacatccagccaacaagcatatgaaaaaatgctcatcattagagaaatgcaaatcaaaaccacaatgagatatcatctcacaccagtcagaatggctattattaaagagtcaaaaaacaacagatgctggttaggtc</dnaseq>|
 
sequence = <dnaseq>TGGGAGAAGGACTAAATGGCCTAGAAGAGGGATCACACATAATGAGGTACAATTGTCTGCTTATACAGACTTGCTGGAGCATAATAGTTCCACAAAGACCATTCTCCAAATAGTGAACCCAGAAGCCTTCACTTATGACTTCAATAAAAATTCaccaatggaacagaatagatagcccagaaataatgccacacacctacaaccatctgatcttccacaaaatcaacaaaaacaagcaatggggaaaggactccctattcaatgattggtgctggaataactggctagccatatgcagaagattgaaactggaccccttccttacaccatatacatgaatcaacctaagatggatcaaagacttaaatgtaaagcctaaaactataaaaactctcgaggataacatagaaaataccattctggatataggacctggcaaatatttcatgatgaagacaccaaaaccaactgcaacaaaaacaaaaattgacaaatgggactggattaaagaaagaacttctgcacagcaaaagaaactctcaacagtgtaaacagacaacctgcagaatgggagaaaatttttgcaaactatgcatccaacaaaggccctctaatatccagaatctatgaggaacttaaacaaatttacaaccgagaaacaaacaacctcattaaaaagtgggcaaaggacatgaacagacacttttcaaaaaaagcatacatccagccaacaagcatatgaaaaaatgctcatcattagagaaatgcaaatcaaaaccacaatgagatatcatctcacaccagtcagaatggctattattaaagagtcaaaaaacaacagatgctggttaggtc</dnaseq>|
 
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[[Category:Intergenic]][[Category:NONHSAG050814]]
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[[Category:Intergenic]][[Category:NONHSAG050814]][[Category:Transcripts]]

Latest revision as of 07:04, 17 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT127850

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

855 nt

Genomic location

chr8+:96984267..96986144

Exon number

2

Exons

96984267..96984312,96985336..96986144

Genome context

Sequence
000001 TGGGAGAAGG ACTAAATGGC CTAGAAGAGG GATCACACAT AATGAGGTAC AATTGTCTGC TTATACAGAC TTGCTGGAGC 000080
000081 ATAATAGTTC CACAAAGACC ATTCTCCAAA TAGTGAACCC AGAAGCCTTC ACTTATGACT TCAATAAAAA TTCaccaatg 000160
000161 gaacagaata gatagcccag aaataatgcc acacacctac aaccatctga tcttccacaa aatcaacaaa aacaagcaat 000240
000241 ggggaaagga ctccctattc aatgattggt gctggaataa ctggctagcc atatgcagaa gattgaaact ggaccccttc 000320
000321 cttacaccat atacatgaat caacctaaga tggatcaaag acttaaatgt aaagcctaaa actataaaaa ctctcgagga 000400
000401 taacatagaa aataccattc tggatatagg acctggcaaa tatttcatga tgaagacacc aaaaccaact gcaacaaaaa 000480
000481 caaaaattga caaatgggac tggattaaag aaagaacttc tgcacagcaa aagaaactct caacagtgta aacagacaac 000560
000561 ctgcagaatg ggagaaaatt tttgcaaact atgcatccaa caaaggccct ctaatatcca gaatctatga ggaacttaaa 000640
000641 caaatttaca accgagaaac aaacaacctc attaaaaagt gggcaaagga catgaacaga cacttttcaa aaaaagcata 000720
000721 catccagcca acaagcatat gaaaaaatgc tcatcattag agaaatgcaa atcaaaacca caatgagata tcatctcaca 000800
000801 ccagtcagaa tggctattat taaagagtca aaaaacaaca gatgctggtt aggtc
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Predicted Small Protein

Name NONHSAT127850_smProtein_134:337
Length 68
Molecular weight 8269.485
Aromaticity 0.149253731343
Instability index 57.1208955224
Isoelectric point 9.39007568359
Runs 7
Runs residual 0.0388372274752
Runs probability 0.0317207964267
Amino acid sequence MTSIKIHQWNRIDSPEIMPHTYNHLIFHKINKNKQWGKDSLFNDWCWNNWLAICRRLKLD
PFLTPYT
Secondary structure LLEEEELLLLLLLLLLLLLLLLLLEEEEEELLLLLLLLLLLLLLLHHHHHHHHHHHHLLL
LLLLLLL
PRMN -
PiMo -