Difference between revisions of "NONHSAT127952"

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sequence = <dnaseq>AGAAATATCATGTGGCATCAGTCCTGTGCCAAAAGGCCAAGGTGACCATGAGCTAACTGGAGTCAACAAGTATATCCACTATGACCTCCTAGAAAAGAAAATTAACAGTGTTAACGAATGATTGAACCAGGCTCTGATCCTCTTGGAGATCATGTATGGATACCTAGATGACCCCAGGCAACTGAACAGAGTAAGATGTACCTGCATAGGCATTCAGGATACTATGGACCGTATGGCCACAGTGCAGTTCATAAGCAGAGAGGTGGCCAAATGGCCATATCATCCACCATCCACTGTGATCACCAGACAAGGCTCAGCTCAGGGAAAAGAAAGGTCTGTGCCAGGCCAAGGACATAAATCAGAAAGTATAATTTCCTAGCAACTGCAGATGTGAACTACAGTGTGGGCTTTTAGAAGATGGACCTAGAATCAATCACCAGATCATTCTTGAAAGCTACATATACCCCAGGATTCTTCTTATTCCACTACTCCCACACCTCAATAGTGGTGGCTTGCAGAGCATATACACTGGAGCTGGGGAGGCTGATGCAGTGGACGGCAGGATTGAAATTATTTAGGAGTTGAAGTGCCACAAGATGAATGGTGTGAAGCTGACAGGCACAATCTCAAGCTAGATCTGATCCACAGATGTGATCCTGAAGGTGGCACACGCGTACTGTGGAGTACCAGCAGCCTAGCATACAGCCCATCTCATACATTGGCCTGATGATAATCTGAACACGGGTGTAGAAATTGGGGCCCTCAGTGTTCTCTTAGAACCACGGAATAAAGCAATAACTGGGTAAGACAGGCTAAGGAGACAATGCCAATCCAAGATAAAATCAAGGATCACTTGGTACCTGACCCTGATTGCCATTATAAATGACAGGTAAAAATTAACCTCAACAAGCTGAAGCCCCATGTAAATAAGCCCTTTACCCCGACCTAGCCCACACTGTGGAAGAAGTAGGTACTGTGGTGGAGAAGGAGGGATGGCCTTTGGACATCAAAGTGGGTCTGATCAACAGCTGTACCAACTCAAGCTATGAGGACATCAGGTGCTCAACAGCTATGGCCAAGCAAGTGCTAGCTCATGGGCTCAAGTGCAAGTCACAGCTCACCACAGCACTGGGATCTAAGCAGATCTACACTAATATTGAGCATAAGAGTTATTCACAGATCCCATAGGATATGGCAGGCATTGTCCTGGCCACTGTCTGTGGCCCCTGCATTGGCCAGTGGAACAGGTAGGACATAATAAAGATGGAGAAAAATGCAATCTTCACCTCCTACAAGAGGAACTTGACAGGCCACAATAAAGCAAACCTGAGGCCCAAGCCTTCATCATGTCCCTAGAGATCCTCAAGCCCTGGCCATTTCTGTCACCATCAACTTCAACCAAGAGATTTACTTCCTGACAACCATGTATGGGAAGAAGTACAAATTGGAGGCTCCAGATGCAGATGAGCTTCCCTAAGCAGAGTTGACTCCAGGAAGGACAACTACCAGCACCCCTACCACAAGGATATCAGTAGGCAGAGGGTGGATATGAGCACACCCAACAAGTGCCTACAGCTCCTGGAGCCTTTTGACAAGTGGGAAGGCAAAGACCTGGATGACCTACAGATTCACATATCCTTACAAAAGTGAAAAGGAAGCATACCACTCACTACATTTTGAATATTGGCATATGGTTCAAGTTATTGAGGCACCAGTACAACATCTCCAATAACCTGCTTATTGGTGCCATAAACACTGAAAACAATAAATGCCAACTCCTTAGGTAATGTTGTCACCAGGAGAAGGCCCACTACTGTAAGAAACATGCCATCAGATAGATGGTTATCAGAGATGAGAGCCATGGCAAGCTGGGAGCATATACCACTAGAACCCTGCCACCTTGGGAGACAGGGCATCATCATCAAGAGCTTTACCAGGATCCAGGAAACTAGCTTCAAGAAACCAACCTGCTGTCCCTTACCTTTACTGACATGACAAACTATAAGATCTACCCTGCGTGTAATCTCATCATCCAAGGCTGGAAAGGCTTTGCCCTGTCAAGCCCCTCAAATGTATCATCAAGAACTCCAAGAGGATTCAGGAAACCATCCTCCTGAACCACGAACTTCTACAAGACCCTGATTCAATGGTTCCATGTTGGCAGTGCTCTGAACAGAATGATGGAGCTATAGTACTGAGCTCTAA</dnaseq>|
 
sequence = <dnaseq>AGAAATATCATGTGGCATCAGTCCTGTGCCAAAAGGCCAAGGTGACCATGAGCTAACTGGAGTCAACAAGTATATCCACTATGACCTCCTAGAAAAGAAAATTAACAGTGTTAACGAATGATTGAACCAGGCTCTGATCCTCTTGGAGATCATGTATGGATACCTAGATGACCCCAGGCAACTGAACAGAGTAAGATGTACCTGCATAGGCATTCAGGATACTATGGACCGTATGGCCACAGTGCAGTTCATAAGCAGAGAGGTGGCCAAATGGCCATATCATCCACCATCCACTGTGATCACCAGACAAGGCTCAGCTCAGGGAAAAGAAAGGTCTGTGCCAGGCCAAGGACATAAATCAGAAAGTATAATTTCCTAGCAACTGCAGATGTGAACTACAGTGTGGGCTTTTAGAAGATGGACCTAGAATCAATCACCAGATCATTCTTGAAAGCTACATATACCCCAGGATTCTTCTTATTCCACTACTCCCACACCTCAATAGTGGTGGCTTGCAGAGCATATACACTGGAGCTGGGGAGGCTGATGCAGTGGACGGCAGGATTGAAATTATTTAGGAGTTGAAGTGCCACAAGATGAATGGTGTGAAGCTGACAGGCACAATCTCAAGCTAGATCTGATCCACAGATGTGATCCTGAAGGTGGCACACGCGTACTGTGGAGTACCAGCAGCCTAGCATACAGCCCATCTCATACATTGGCCTGATGATAATCTGAACACGGGTGTAGAAATTGGGGCCCTCAGTGTTCTCTTAGAACCACGGAATAAAGCAATAACTGGGTAAGACAGGCTAAGGAGACAATGCCAATCCAAGATAAAATCAAGGATCACTTGGTACCTGACCCTGATTGCCATTATAAATGACAGGTAAAAATTAACCTCAACAAGCTGAAGCCCCATGTAAATAAGCCCTTTACCCCGACCTAGCCCACACTGTGGAAGAAGTAGGTACTGTGGTGGAGAAGGAGGGATGGCCTTTGGACATCAAAGTGGGTCTGATCAACAGCTGTACCAACTCAAGCTATGAGGACATCAGGTGCTCAACAGCTATGGCCAAGCAAGTGCTAGCTCATGGGCTCAAGTGCAAGTCACAGCTCACCACAGCACTGGGATCTAAGCAGATCTACACTAATATTGAGCATAAGAGTTATTCACAGATCCCATAGGATATGGCAGGCATTGTCCTGGCCACTGTCTGTGGCCCCTGCATTGGCCAGTGGAACAGGTAGGACATAATAAAGATGGAGAAAAATGCAATCTTCACCTCCTACAAGAGGAACTTGACAGGCCACAATAAAGCAAACCTGAGGCCCAAGCCTTCATCATGTCCCTAGAGATCCTCAAGCCCTGGCCATTTCTGTCACCATCAACTTCAACCAAGAGATTTACTTCCTGACAACCATGTATGGGAAGAAGTACAAATTGGAGGCTCCAGATGCAGATGAGCTTCCCTAAGCAGAGTTGACTCCAGGAAGGACAACTACCAGCACCCCTACCACAAGGATATCAGTAGGCAGAGGGTGGATATGAGCACACCCAACAAGTGCCTACAGCTCCTGGAGCCTTTTGACAAGTGGGAAGGCAAAGACCTGGATGACCTACAGATTCACATATCCTTACAAAAGTGAAAAGGAAGCATACCACTCACTACATTTTGAATATTGGCATATGGTTCAAGTTATTGAGGCACCAGTACAACATCTCCAATAACCTGCTTATTGGTGCCATAAACACTGAAAACAATAAATGCCAACTCCTTAGGTAATGTTGTCACCAGGAGAAGGCCCACTACTGTAAGAAACATGCCATCAGATAGATGGTTATCAGAGATGAGAGCCATGGCAAGCTGGGAGCATATACCACTAGAACCCTGCCACCTTGGGAGACAGGGCATCATCATCAAGAGCTTTACCAGGATCCAGGAAACTAGCTTCAAGAAACCAACCTGCTGTCCCTTACCTTTACTGACATGACAAACTATAAGATCTACCCTGCGTGTAATCTCATCATCCAAGGCTGGAAAGGCTTTGCCCTGTCAAGCCCCTCAAATGTATCATCAAGAACTCCAAGAGGATTCAGGAAACCATCCTCCTGAACCACGAACTTCTACAAGACCCTGATTCAATGGTTCCATGTTGGCAGTGCTCTGAACAGAATGATGGAGCTATAGTACTGAGCTCTAA</dnaseq>|
 
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[[Category:Intronic(AS)]]
+
[[Category:Intronic(AS)]][[Category:NONHSAG050873]][[Category:Transcripts]]

Latest revision as of 07:04, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT127952

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

2205 nt

Genomic location

chr8-:100358280..100360484

Exon number

1

Exons

100358280..100360484

Genome context

Sequence
000001 AGAAATATCA TGTGGCATCA GTCCTGTGCC AAAAGGCCAA GGTGACCATG AGCTAACTGG AGTCAACAAG TATATCCACT 000080
000081 ATGACCTCCT AGAAAAGAAA ATTAACAGTG TTAACGAATG ATTGAACCAG GCTCTGATCC TCTTGGAGAT CATGTATGGA 000160
000161 TACCTAGATG ACCCCAGGCA ACTGAACAGA GTAAGATGTA CCTGCATAGG CATTCAGGAT ACTATGGACC GTATGGCCAC 000240
000241 AGTGCAGTTC ATAAGCAGAG AGGTGGCCAA ATGGCCATAT CATCCACCAT CCACTGTGAT CACCAGACAA GGCTCAGCTC 000320
000321 AGGGAAAAGA AAGGTCTGTG CCAGGCCAAG GACATAAATC AGAAAGTATA ATTTCCTAGC AACTGCAGAT GTGAACTACA 000400
000401 GTGTGGGCTT TTAGAAGATG GACCTAGAAT CAATCACCAG ATCATTCTTG AAAGCTACAT ATACCCCAGG ATTCTTCTTA 000480
000481 TTCCACTACT CCCACACCTC AATAGTGGTG GCTTGCAGAG CATATACACT GGAGCTGGGG AGGCTGATGC AGTGGACGGC 000560
000561 AGGATTGAAA TTATTTAGGA GTTGAAGTGC CACAAGATGA ATGGTGTGAA GCTGACAGGC ACAATCTCAA GCTAGATCTG 000640
000641 ATCCACAGAT GTGATCCTGA AGGTGGCACA CGCGTACTGT GGAGTACCAG CAGCCTAGCA TACAGCCCAT CTCATACATT 000720
000721 GGCCTGATGA TAATCTGAAC ACGGGTGTAG AAATTGGGGC CCTCAGTGTT CTCTTAGAAC CACGGAATAA AGCAATAACT 000800
000801 GGGTAAGACA GGCTAAGGAG ACAATGCCAA TCCAAGATAA AATCAAGGAT CACTTGGTAC CTGACCCTGA TTGCCATTAT 000880
000881 AAATGACAGG TAAAAATTAA CCTCAACAAG CTGAAGCCCC ATGTAAATAA GCCCTTTACC CCGACCTAGC CCACACTGTG 000960
000961 GAAGAAGTAG GTACTGTGGT GGAGAAGGAG GGATGGCCTT TGGACATCAA AGTGGGTCTG ATCAACAGCT GTACCAACTC 001040
001041 AAGCTATGAG GACATCAGGT GCTCAACAGC TATGGCCAAG CAAGTGCTAG CTCATGGGCT CAAGTGCAAG TCACAGCTCA 001120
001121 CCACAGCACT GGGATCTAAG CAGATCTACA CTAATATTGA GCATAAGAGT TATTCACAGA TCCCATAGGA TATGGCAGGC 001200
001201 ATTGTCCTGG CCACTGTCTG TGGCCCCTGC ATTGGCCAGT GGAACAGGTA GGACATAATA AAGATGGAGA AAAATGCAAT 001280
001281 CTTCACCTCC TACAAGAGGA ACTTGACAGG CCACAATAAA GCAAACCTGA GGCCCAAGCC TTCATCATGT CCCTAGAGAT 001360
001361 CCTCAAGCCC TGGCCATTTC TGTCACCATC AACTTCAACC AAGAGATTTA CTTCCTGACA ACCATGTATG GGAAGAAGTA 001440
001441 CAAATTGGAG GCTCCAGATG CAGATGAGCT TCCCTAAGCA GAGTTGACTC CAGGAAGGAC AACTACCAGC ACCCCTACCA 001520
001521 CAAGGATATC AGTAGGCAGA GGGTGGATAT GAGCACACCC AACAAGTGCC TACAGCTCCT GGAGCCTTTT GACAAGTGGG 001600
001601 AAGGCAAAGA CCTGGATGAC CTACAGATTC ACATATCCTT ACAAAAGTGA AAAGGAAGCA TACCACTCAC TACATTTTGA 001680
001681 ATATTGGCAT ATGGTTCAAG TTATTGAGGC ACCAGTACAA CATCTCCAAT AACCTGCTTA TTGGTGCCAT AAACACTGAA 001760
001761 AACAATAAAT GCCAACTCCT TAGGTAATGT TGTCACCAGG AGAAGGCCCA CTACTGTAAG AAACATGCCA TCAGATAGAT 001840
001841 GGTTATCAGA GATGAGAGCC ATGGCAAGCT GGGAGCATAT ACCACTAGAA CCCTGCCACC TTGGGAGACA GGGCATCATC 001920
001921 ATCAAGAGCT TTACCAGGAT CCAGGAAACT AGCTTCAAGA AACCAACCTG CTGTCCCTTA CCTTTACTGA CATGACAAAC 002000
002001 TATAAGATCT ACCCTGCGTG TAATCTCATC ATCCAAGGCT GGAAAGGCTT TGCCCTGTCA AGCCCCTCAA ATGTATCATC 002080
002081 AAGAACTCCA AGAGGATTCA GGAAACCATC CTCCTGAACC ACGAACTTCT ACAAGACCCT GATTCAATGG TTCCATGTTG 002160
002161 GCAGTGCTCT GAACAGAATG ATGGAGCTAT AGTACTGAGC TCTAA
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Predicted Small Protein

Name NONHSAT127952_smProtein_1991:2116
Length 42
Molecular weight 4561.2075
Aromaticity 0.121951219512
Instability index 55.8341463415
Isoelectric point 10.5607299805
Runs 8
Runs residual 0.0191530749663
Runs probability 0.00701068715773
Amino acid sequence MTNYKIYPACNLIIQGWKGFALSSPSNVSSRTPRGFRKPSS
Secondary structure LLLLEELLHHHHEEELLLEEEELLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -