Difference between revisions of "NONHSAT128446"

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sequence = <dnaseq>GATGCCATCAGTCACTGTGACAAATGGTGTGTGGGGGGAGCTTGCTGGCTGAAGCATTGTCACCGTGGGTAATTATACACTTAATATTCATGTGTTATCGTTCCACCTGGAATCTTTAAACTCTTCATCCAGGAGACACTAATCTTCACCTTATTATTACGTCCTAATGTCACTCTAGCAGAAGAATGGGGCTGCCAACAGGGGGAGAGAACTTCCTCCTTCTCCTCTAGGTTGTAATAAACATGGTTATTTGTTATTTGAACTCTGGCTGAAGATAAGACGCTATATGCCCCTGCCAGATATGGCCCAGGTGTAGAGATGAGTCCAGGTTATTGTTAAAAGAGTGAAAATGCCCCTGTCACATTCCCCATCGTTTTCTTCCATCTATAAAGATGATGGCAATGGTGTTGGCAATGGTGGTGATAATGATGATTATCAAGTGAGCATTATTCCATTTTTAGGCATGATGGAAGGAAAAGTCAAATGCAGTGTTCTTAACACTTCTTATAACGTTCAGAAACCACCAGATAGAGAGAATGCTGTCTGTCCTTAATGCAAGCAGCCCTTGGAATTGTTTCTAGAGCTGTCATGAGCTGCCGATGGGAAGGTGACATCAGTGTCGGTCACAAATTCTCCCTTCAGCCTGATCTATGCCTCTAGAGAGAATTCCCAGGAAGGCAAGTTTTTGCCCTAACTTTGGGAATCCAGTATGTATGGACTGAACCAGGGTTCCCCATAACTACCCCTCTTTTATGTACACCACAATCACCCTGTGATTGACCCATTTGCTGAGCAGAGCGTACCAAGAGGGAGCCTAGATCTTAAACAGAGCTTTGATTGATTGGGGCTGAAAGGGGGCAGATTCTGTATGAGACCAGCAGGCATTACAAACTTCTCAATTTGAAACAAAAATGCTTTAATGCTACTTATTGTTGTTGTCTTATTGTGAAAGTTAGTCATTCTTATATATGGTTGGCTTTCTTTCAAGGTCAATTGCACAGTCTGTTCTTTGGGGGCACCGCATAGCCCTATAGCATGCTTAAAATGCATAAAGCTTAGAGGAAGACTAGTTCTCTGGAGAGAATTCTGTGTTTGTCCAAGAACTGGATCCCTGCCTCCTCCCACACAGTCACTCCACAGCCAGTTGCATACTTGCAGAGAGATTTATGGGGCTGAACATACAGCTGCAAGTTTTCTTTTCTTCTACTTTTTTTTTCTTCCAGGAACAGTGTCCTGCTGTCAGGTCTGTGTGCACTAGACACAAACACATAACTTATTTACTACAGCAGTATCCAAAACTCCTAAGTAGTGTCCTTGCTGAATGTGAGTGTTTTCATGAATATGAAACATTCTGAAGATGTAAGGAATTCCTAGATACAAGCCAATCTTGACTCAGTTTACATCTCTGTCTAATATTTTGGTGAAGGACCATCCAGGAGTCTAGTTACACTGTACAGCTGTTTCAGTTCTAAAGCAACTTGGTTACCTTATGGTCAAGATCAGAAATTCCTTAACGGAATTTGACTGCTCTGTTTCCTTTAAAAGTATGCTGATTGTTTATAGTAGCTTCTGGATTCTCTGTCCTTGGGAGGTTCTCTTAGATTGAAGCAAATTCTCTCTCATACCTTGTGTTGGTTTTTGTTTTTATTTTAATTTTTCCTTTGTGATCTGAATGAATAACATCATCACTTAACACCTATTGCCATTTCAAAGACAGAATCCCAACAGGCTTTTCTGGGTATGGACCCATGCAATGGTTTGTCTGCCTTTCAACAATTTGTATCATCTTGGCCATTTTGGGGAACAGGGATTGTGCATGGGGAAGGATGGAAGAGGAAAACCAATATTTATTTAACATTCAGTGGTAGTAAACACTGGGATTAGTACTTAATTAGAGTTGATCCTCATAATAAACTTGATCCCCATTTTACAGATGAGTAAATTATAACTCAGAGAATTTCTAACTTGCCCAAAGTCATACAACTAATAAATTGTAAAGGTGGGAGTTAAAGCAATTTTTTATTGAACTATATAGAAAATGTACAAATTATTTATACACATCTCCAGTTATTACAAAGTGAACTGCTAGGAATGTGAGTGGAATTGGTAATGTCAGTTAAAGGCAGAAGGACGCGCT</dnaseq>|
 
sequence = <dnaseq>GATGCCATCAGTCACTGTGACAAATGGTGTGTGGGGGGAGCTTGCTGGCTGAAGCATTGTCACCGTGGGTAATTATACACTTAATATTCATGTGTTATCGTTCCACCTGGAATCTTTAAACTCTTCATCCAGGAGACACTAATCTTCACCTTATTATTACGTCCTAATGTCACTCTAGCAGAAGAATGGGGCTGCCAACAGGGGGAGAGAACTTCCTCCTTCTCCTCTAGGTTGTAATAAACATGGTTATTTGTTATTTGAACTCTGGCTGAAGATAAGACGCTATATGCCCCTGCCAGATATGGCCCAGGTGTAGAGATGAGTCCAGGTTATTGTTAAAAGAGTGAAAATGCCCCTGTCACATTCCCCATCGTTTTCTTCCATCTATAAAGATGATGGCAATGGTGTTGGCAATGGTGGTGATAATGATGATTATCAAGTGAGCATTATTCCATTTTTAGGCATGATGGAAGGAAAAGTCAAATGCAGTGTTCTTAACACTTCTTATAACGTTCAGAAACCACCAGATAGAGAGAATGCTGTCTGTCCTTAATGCAAGCAGCCCTTGGAATTGTTTCTAGAGCTGTCATGAGCTGCCGATGGGAAGGTGACATCAGTGTCGGTCACAAATTCTCCCTTCAGCCTGATCTATGCCTCTAGAGAGAATTCCCAGGAAGGCAAGTTTTTGCCCTAACTTTGGGAATCCAGTATGTATGGACTGAACCAGGGTTCCCCATAACTACCCCTCTTTTATGTACACCACAATCACCCTGTGATTGACCCATTTGCTGAGCAGAGCGTACCAAGAGGGAGCCTAGATCTTAAACAGAGCTTTGATTGATTGGGGCTGAAAGGGGGCAGATTCTGTATGAGACCAGCAGGCATTACAAACTTCTCAATTTGAAACAAAAATGCTTTAATGCTACTTATTGTTGTTGTCTTATTGTGAAAGTTAGTCATTCTTATATATGGTTGGCTTTCTTTCAAGGTCAATTGCACAGTCTGTTCTTTGGGGGCACCGCATAGCCCTATAGCATGCTTAAAATGCATAAAGCTTAGAGGAAGACTAGTTCTCTGGAGAGAATTCTGTGTTTGTCCAAGAACTGGATCCCTGCCTCCTCCCACACAGTCACTCCACAGCCAGTTGCATACTTGCAGAGAGATTTATGGGGCTGAACATACAGCTGCAAGTTTTCTTTTCTTCTACTTTTTTTTTCTTCCAGGAACAGTGTCCTGCTGTCAGGTCTGTGTGCACTAGACACAAACACATAACTTATTTACTACAGCAGTATCCAAAACTCCTAAGTAGTGTCCTTGCTGAATGTGAGTGTTTTCATGAATATGAAACATTCTGAAGATGTAAGGAATTCCTAGATACAAGCCAATCTTGACTCAGTTTACATCTCTGTCTAATATTTTGGTGAAGGACCATCCAGGAGTCTAGTTACACTGTACAGCTGTTTCAGTTCTAAAGCAACTTGGTTACCTTATGGTCAAGATCAGAAATTCCTTAACGGAATTTGACTGCTCTGTTTCCTTTAAAAGTATGCTGATTGTTTATAGTAGCTTCTGGATTCTCTGTCCTTGGGAGGTTCTCTTAGATTGAAGCAAATTCTCTCTCATACCTTGTGTTGGTTTTTGTTTTTATTTTAATTTTTCCTTTGTGATCTGAATGAATAACATCATCACTTAACACCTATTGCCATTTCAAAGACAGAATCCCAACAGGCTTTTCTGGGTATGGACCCATGCAATGGTTTGTCTGCCTTTCAACAATTTGTATCATCTTGGCCATTTTGGGGAACAGGGATTGTGCATGGGGAAGGATGGAAGAGGAAAACCAATATTTATTTAACATTCAGTGGTAGTAAACACTGGGATTAGTACTTAATTAGAGTTGATCCTCATAATAAACTTGATCCCCATTTTACAGATGAGTAAATTATAACTCAGAGAATTTCTAACTTGCCCAAAGTCATACAACTAATAAATTGTAAAGGTGGGAGTTAAAGCAATTTTTTATTGAACTATATAGAAAATGTACAAATTATTTATACACATCTCCAGTTATTACAAAGTGAACTGCTAGGAATGTGAGTGGAATTGGTAATGTCAGTTAAAGGCAGAAGGACGCGCT</dnaseq>|
 
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[[Category:Intronic(S)]]
+
[[Category:Intronic(S)]][[Category:NONHSAG051129]][[Category:Transcripts]]

Latest revision as of 07:07, 17 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT128446

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

2137 nt

Genomic location

chr8+:121048080..121049710

Exon number

1

Exons

121048080..121049710

Genome context

Sequence
000001 GATGCCATCA GTCACTGTGA CAAATGGTGT GTGGGGGGAG CTTGCTGGCT GAAGCATTGT CACCGTGGGT AATTATACAC 000080
000081 TTAATATTCA TGTGTTATCG TTCCACCTGG AATCTTTAAA CTCTTCATCC AGGAGACACT AATCTTCACC TTATTATTAC 000160
000161 GTCCTAATGT CACTCTAGCA GAAGAATGGG GCTGCCAACA GGGGGAGAGA ACTTCCTCCT TCTCCTCTAG GTTGTAATAA 000240
000241 ACATGGTTAT TTGTTATTTG AACTCTGGCT GAAGATAAGA CGCTATATGC CCCTGCCAGA TATGGCCCAG GTGTAGAGAT 000320
000321 GAGTCCAGGT TATTGTTAAA AGAGTGAAAA TGCCCCTGTC ACATTCCCCA TCGTTTTCTT CCATCTATAA AGATGATGGC 000400
000401 AATGGTGTTG GCAATGGTGG TGATAATGAT GATTATCAAG TGAGCATTAT TCCATTTTTA GGCATGATGG AAGGAAAAGT 000480
000481 CAAATGCAGT GTTCTTAACA CTTCTTATAA CGTTCAGAAA CCACCAGATA GAGAGAATGC TGTCTGTCCT TAATGCAAGC 000560
000561 AGCCCTTGGA ATTGTTTCTA GAGCTGTCAT GAGCTGCCGA TGGGAAGGTG ACATCAGTGT CGGTCACAAA TTCTCCCTTC 000640
000641 AGCCTGATCT ATGCCTCTAG AGAGAATTCC CAGGAAGGCA AGTTTTTGCC CTAACTTTGG GAATCCAGTA TGTATGGACT 000720
000721 GAACCAGGGT TCCCCATAAC TACCCCTCTT TTATGTACAC CACAATCACC CTGTGATTGA CCCATTTGCT GAGCAGAGCG 000800
000801 TACCAAGAGG GAGCCTAGAT CTTAAACAGA GCTTTGATTG ATTGGGGCTG AAAGGGGGCA GATTCTGTAT GAGACCAGCA 000880
000881 GGCATTACAA ACTTCTCAAT TTGAAACAAA AATGCTTTAA TGCTACTTAT TGTTGTTGTC TTATTGTGAA AGTTAGTCAT 000960
000961 TCTTATATAT GGTTGGCTTT CTTTCAAGGT CAATTGCACA GTCTGTTCTT TGGGGGCACC GCATAGCCCT ATAGCATGCT 001040
001041 TAAAATGCAT AAAGCTTAGA GGAAGACTAG TTCTCTGGAG AGAATTCTGT GTTTGTCCAA GAACTGGATC CCTGCCTCCT 001120
001121 CCCACACAGT CACTCCACAG CCAGTTGCAT ACTTGCAGAG AGATTTATGG GGCTGAACAT ACAGCTGCAA GTTTTCTTTT 001200
001201 CTTCTACTTT TTTTTTCTTC CAGGAACAGT GTCCTGCTGT CAGGTCTGTG TGCACTAGAC ACAAACACAT AACTTATTTA 001280
001281 CTACAGCAGT ATCCAAAACT CCTAAGTAGT GTCCTTGCTG AATGTGAGTG TTTTCATGAA TATGAAACAT TCTGAAGATG 001360
001361 TAAGGAATTC CTAGATACAA GCCAATCTTG ACTCAGTTTA CATCTCTGTC TAATATTTTG GTGAAGGACC ATCCAGGAGT 001440
001441 CTAGTTACAC TGTACAGCTG TTTCAGTTCT AAAGCAACTT GGTTACCTTA TGGTCAAGAT CAGAAATTCC TTAACGGAAT 001520
001521 TTGACTGCTC TGTTTCCTTT AAAAGTATGC TGATTGTTTA TAGTAGCTTC TGGATTCTCT GTCCTTGGGA GGTTCTCTTA 001600
001601 GATTGAAGCA AATTCTCTCT CATACCTTGT GTTGGTTTTT GTTTTTATTT TAATTTTTCC TTTGTGATCT GAATGAATAA 001680
001681 CATCATCACT TAACACCTAT TGCCATTTCA AAGACAGAAT CCCAACAGGC TTTTCTGGGT ATGGACCCAT GCAATGGTTT 001760
001761 GTCTGCCTTT CAACAATTTG TATCATCTTG GCCATTTTGG GGAACAGGGA TTGTGCATGG GGAAGGATGG AAGAGGAAAA 001840
001841 CCAATATTTA TTTAACATTC AGTGGTAGTA AACACTGGGA TTAGTACTTA ATTAGAGTTG ATCCTCATAA TAAACTTGAT 001920
001921 CCCCATTTTA CAGATGAGTA AATTATAACT CAGAGAATTT CTAACTTGCC CAAAGTCATA CAACTAATAA ATTGTAAAGG 002000
002001 TGGGAGTTAA AGCAATTTTT TATTGAACTA TATAGAAAAT GTACAAATTA TTTATACACA TCTCCAGTTA TTACAAAGTG 002080
002081 AACTGCTAGG AATGTGAGTG GAATTGGTAA TGTCAGTTAA AGGCAGAAGG ACGCGCT
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Predicted Small Protein

Name NONHSAT128446_smProtein_1166:1354
Length 63
Molecular weight 7385.4566
Aromaticity 0.177419354839
Instability index 89.4564516129
Isoelectric point 6.23516845703
Runs 8
Runs residual 0.0246082949309
Runs probability 0.036996555379
Amino acid sequence MGLNIQLQVFFSSTFFFFQEQCPAVRSVCTRHKHITYLLQQYPKLLSSVLAECECFHEYE
TF
Secondary structure LLLEEEEEEEEEEHHHLLLLLLLLHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLL
LL
PRMN -
PiMo -