Difference between revisions of "NONHSAT128446"
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sequence = <dnaseq>GATGCCATCAGTCACTGTGACAAATGGTGTGTGGGGGGAGCTTGCTGGCTGAAGCATTGTCACCGTGGGTAATTATACACTTAATATTCATGTGTTATCGTTCCACCTGGAATCTTTAAACTCTTCATCCAGGAGACACTAATCTTCACCTTATTATTACGTCCTAATGTCACTCTAGCAGAAGAATGGGGCTGCCAACAGGGGGAGAGAACTTCCTCCTTCTCCTCTAGGTTGTAATAAACATGGTTATTTGTTATTTGAACTCTGGCTGAAGATAAGACGCTATATGCCCCTGCCAGATATGGCCCAGGTGTAGAGATGAGTCCAGGTTATTGTTAAAAGAGTGAAAATGCCCCTGTCACATTCCCCATCGTTTTCTTCCATCTATAAAGATGATGGCAATGGTGTTGGCAATGGTGGTGATAATGATGATTATCAAGTGAGCATTATTCCATTTTTAGGCATGATGGAAGGAAAAGTCAAATGCAGTGTTCTTAACACTTCTTATAACGTTCAGAAACCACCAGATAGAGAGAATGCTGTCTGTCCTTAATGCAAGCAGCCCTTGGAATTGTTTCTAGAGCTGTCATGAGCTGCCGATGGGAAGGTGACATCAGTGTCGGTCACAAATTCTCCCTTCAGCCTGATCTATGCCTCTAGAGAGAATTCCCAGGAAGGCAAGTTTTTGCCCTAACTTTGGGAATCCAGTATGTATGGACTGAACCAGGGTTCCCCATAACTACCCCTCTTTTATGTACACCACAATCACCCTGTGATTGACCCATTTGCTGAGCAGAGCGTACCAAGAGGGAGCCTAGATCTTAAACAGAGCTTTGATTGATTGGGGCTGAAAGGGGGCAGATTCTGTATGAGACCAGCAGGCATTACAAACTTCTCAATTTGAAACAAAAATGCTTTAATGCTACTTATTGTTGTTGTCTTATTGTGAAAGTTAGTCATTCTTATATATGGTTGGCTTTCTTTCAAGGTCAATTGCACAGTCTGTTCTTTGGGGGCACCGCATAGCCCTATAGCATGCTTAAAATGCATAAAGCTTAGAGGAAGACTAGTTCTCTGGAGAGAATTCTGTGTTTGTCCAAGAACTGGATCCCTGCCTCCTCCCACACAGTCACTCCACAGCCAGTTGCATACTTGCAGAGAGATTTATGGGGCTGAACATACAGCTGCAAGTTTTCTTTTCTTCTACTTTTTTTTTCTTCCAGGAACAGTGTCCTGCTGTCAGGTCTGTGTGCACTAGACACAAACACATAACTTATTTACTACAGCAGTATCCAAAACTCCTAAGTAGTGTCCTTGCTGAATGTGAGTGTTTTCATGAATATGAAACATTCTGAAGATGTAAGGAATTCCTAGATACAAGCCAATCTTGACTCAGTTTACATCTCTGTCTAATATTTTGGTGAAGGACCATCCAGGAGTCTAGTTACACTGTACAGCTGTTTCAGTTCTAAAGCAACTTGGTTACCTTATGGTCAAGATCAGAAATTCCTTAACGGAATTTGACTGCTCTGTTTCCTTTAAAAGTATGCTGATTGTTTATAGTAGCTTCTGGATTCTCTGTCCTTGGGAGGTTCTCTTAGATTGAAGCAAATTCTCTCTCATACCTTGTGTTGGTTTTTGTTTTTATTTTAATTTTTCCTTTGTGATCTGAATGAATAACATCATCACTTAACACCTATTGCCATTTCAAAGACAGAATCCCAACAGGCTTTTCTGGGTATGGACCCATGCAATGGTTTGTCTGCCTTTCAACAATTTGTATCATCTTGGCCATTTTGGGGAACAGGGATTGTGCATGGGGAAGGATGGAAGAGGAAAACCAATATTTATTTAACATTCAGTGGTAGTAAACACTGGGATTAGTACTTAATTAGAGTTGATCCTCATAATAAACTTGATCCCCATTTTACAGATGAGTAAATTATAACTCAGAGAATTTCTAACTTGCCCAAAGTCATACAACTAATAAATTGTAAAGGTGGGAGTTAAAGCAATTTTTTATTGAACTATATAGAAAATGTACAAATTATTTATACACATCTCCAGTTATTACAAAGTGAACTGCTAGGAATGTGAGTGGAATTGGTAATGTCAGTTAAAGGCAGAAGGACGCGCT</dnaseq>| | sequence = <dnaseq>GATGCCATCAGTCACTGTGACAAATGGTGTGTGGGGGGAGCTTGCTGGCTGAAGCATTGTCACCGTGGGTAATTATACACTTAATATTCATGTGTTATCGTTCCACCTGGAATCTTTAAACTCTTCATCCAGGAGACACTAATCTTCACCTTATTATTACGTCCTAATGTCACTCTAGCAGAAGAATGGGGCTGCCAACAGGGGGAGAGAACTTCCTCCTTCTCCTCTAGGTTGTAATAAACATGGTTATTTGTTATTTGAACTCTGGCTGAAGATAAGACGCTATATGCCCCTGCCAGATATGGCCCAGGTGTAGAGATGAGTCCAGGTTATTGTTAAAAGAGTGAAAATGCCCCTGTCACATTCCCCATCGTTTTCTTCCATCTATAAAGATGATGGCAATGGTGTTGGCAATGGTGGTGATAATGATGATTATCAAGTGAGCATTATTCCATTTTTAGGCATGATGGAAGGAAAAGTCAAATGCAGTGTTCTTAACACTTCTTATAACGTTCAGAAACCACCAGATAGAGAGAATGCTGTCTGTCCTTAATGCAAGCAGCCCTTGGAATTGTTTCTAGAGCTGTCATGAGCTGCCGATGGGAAGGTGACATCAGTGTCGGTCACAAATTCTCCCTTCAGCCTGATCTATGCCTCTAGAGAGAATTCCCAGGAAGGCAAGTTTTTGCCCTAACTTTGGGAATCCAGTATGTATGGACTGAACCAGGGTTCCCCATAACTACCCCTCTTTTATGTACACCACAATCACCCTGTGATTGACCCATTTGCTGAGCAGAGCGTACCAAGAGGGAGCCTAGATCTTAAACAGAGCTTTGATTGATTGGGGCTGAAAGGGGGCAGATTCTGTATGAGACCAGCAGGCATTACAAACTTCTCAATTTGAAACAAAAATGCTTTAATGCTACTTATTGTTGTTGTCTTATTGTGAAAGTTAGTCATTCTTATATATGGTTGGCTTTCTTTCAAGGTCAATTGCACAGTCTGTTCTTTGGGGGCACCGCATAGCCCTATAGCATGCTTAAAATGCATAAAGCTTAGAGGAAGACTAGTTCTCTGGAGAGAATTCTGTGTTTGTCCAAGAACTGGATCCCTGCCTCCTCCCACACAGTCACTCCACAGCCAGTTGCATACTTGCAGAGAGATTTATGGGGCTGAACATACAGCTGCAAGTTTTCTTTTCTTCTACTTTTTTTTTCTTCCAGGAACAGTGTCCTGCTGTCAGGTCTGTGTGCACTAGACACAAACACATAACTTATTTACTACAGCAGTATCCAAAACTCCTAAGTAGTGTCCTTGCTGAATGTGAGTGTTTTCATGAATATGAAACATTCTGAAGATGTAAGGAATTCCTAGATACAAGCCAATCTTGACTCAGTTTACATCTCTGTCTAATATTTTGGTGAAGGACCATCCAGGAGTCTAGTTACACTGTACAGCTGTTTCAGTTCTAAAGCAACTTGGTTACCTTATGGTCAAGATCAGAAATTCCTTAACGGAATTTGACTGCTCTGTTTCCTTTAAAAGTATGCTGATTGTTTATAGTAGCTTCTGGATTCTCTGTCCTTGGGAGGTTCTCTTAGATTGAAGCAAATTCTCTCTCATACCTTGTGTTGGTTTTTGTTTTTATTTTAATTTTTCCTTTGTGATCTGAATGAATAACATCATCACTTAACACCTATTGCCATTTCAAAGACAGAATCCCAACAGGCTTTTCTGGGTATGGACCCATGCAATGGTTTGTCTGCCTTTCAACAATTTGTATCATCTTGGCCATTTTGGGGAACAGGGATTGTGCATGGGGAAGGATGGAAGAGGAAAACCAATATTTATTTAACATTCAGTGGTAGTAAACACTGGGATTAGTACTTAATTAGAGTTGATCCTCATAATAAACTTGATCCCCATTTTACAGATGAGTAAATTATAACTCAGAGAATTTCTAACTTGCCCAAAGTCATACAACTAATAAATTGTAAAGGTGGGAGTTAAAGCAATTTTTTATTGAACTATATAGAAAATGTACAAATTATTTATACACATCTCCAGTTATTACAAAGTGAACTGCTAGGAATGTGAGTGGAATTGGTAATGTCAGTTAAAGGCAGAAGGACGCGCT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(S)]][[Category:NONHSAG051129]] | + | [[Category:Intronic(S)]][[Category:NONHSAG051129]][[Category:Transcripts]] |
Latest revision as of 07:07, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128446 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2137 nt |
Genomic location |
chr8+:121048080..121049710 |
Exon number |
1 |
Exons |
121048080..121049710 |
Genome context |
|
Sequence |
000001 GATGCCATCA GTCACTGTGA CAAATGGTGT GTGGGGGGAG CTTGCTGGCT GAAGCATTGT CACCGTGGGT AATTATACAC 000080
000081 TTAATATTCA TGTGTTATCG TTCCACCTGG AATCTTTAAA CTCTTCATCC AGGAGACACT AATCTTCACC TTATTATTAC 000160 000161 GTCCTAATGT CACTCTAGCA GAAGAATGGG GCTGCCAACA GGGGGAGAGA ACTTCCTCCT TCTCCTCTAG GTTGTAATAA 000240 000241 ACATGGTTAT TTGTTATTTG AACTCTGGCT GAAGATAAGA CGCTATATGC CCCTGCCAGA TATGGCCCAG GTGTAGAGAT 000320 000321 GAGTCCAGGT TATTGTTAAA AGAGTGAAAA TGCCCCTGTC ACATTCCCCA TCGTTTTCTT CCATCTATAA AGATGATGGC 000400 000401 AATGGTGTTG GCAATGGTGG TGATAATGAT GATTATCAAG TGAGCATTAT TCCATTTTTA GGCATGATGG AAGGAAAAGT 000480 000481 CAAATGCAGT GTTCTTAACA CTTCTTATAA CGTTCAGAAA CCACCAGATA GAGAGAATGC TGTCTGTCCT TAATGCAAGC 000560 000561 AGCCCTTGGA ATTGTTTCTA GAGCTGTCAT GAGCTGCCGA TGGGAAGGTG ACATCAGTGT CGGTCACAAA TTCTCCCTTC 000640 000641 AGCCTGATCT ATGCCTCTAG AGAGAATTCC CAGGAAGGCA AGTTTTTGCC CTAACTTTGG GAATCCAGTA TGTATGGACT 000720 000721 GAACCAGGGT TCCCCATAAC TACCCCTCTT TTATGTACAC CACAATCACC CTGTGATTGA CCCATTTGCT GAGCAGAGCG 000800 000801 TACCAAGAGG GAGCCTAGAT CTTAAACAGA GCTTTGATTG ATTGGGGCTG AAAGGGGGCA GATTCTGTAT GAGACCAGCA 000880 000881 GGCATTACAA ACTTCTCAAT TTGAAACAAA AATGCTTTAA TGCTACTTAT TGTTGTTGTC TTATTGTGAA AGTTAGTCAT 000960 000961 TCTTATATAT GGTTGGCTTT CTTTCAAGGT CAATTGCACA GTCTGTTCTT TGGGGGCACC GCATAGCCCT ATAGCATGCT 001040 001041 TAAAATGCAT AAAGCTTAGA GGAAGACTAG TTCTCTGGAG AGAATTCTGT GTTTGTCCAA GAACTGGATC CCTGCCTCCT 001120 001121 CCCACACAGT CACTCCACAG CCAGTTGCAT ACTTGCAGAG AGATTTATGG GGCTGAACAT ACAGCTGCAA GTTTTCTTTT 001200 001201 CTTCTACTTT TTTTTTCTTC CAGGAACAGT GTCCTGCTGT CAGGTCTGTG TGCACTAGAC ACAAACACAT AACTTATTTA 001280 001281 CTACAGCAGT ATCCAAAACT CCTAAGTAGT GTCCTTGCTG AATGTGAGTG TTTTCATGAA TATGAAACAT TCTGAAGATG 001360 001361 TAAGGAATTC CTAGATACAA GCCAATCTTG ACTCAGTTTA CATCTCTGTC TAATATTTTG GTGAAGGACC ATCCAGGAGT 001440 001441 CTAGTTACAC TGTACAGCTG TTTCAGTTCT AAAGCAACTT GGTTACCTTA TGGTCAAGAT CAGAAATTCC TTAACGGAAT 001520 001521 TTGACTGCTC TGTTTCCTTT AAAAGTATGC TGATTGTTTA TAGTAGCTTC TGGATTCTCT GTCCTTGGGA GGTTCTCTTA 001600 001601 GATTGAAGCA AATTCTCTCT CATACCTTGT GTTGGTTTTT GTTTTTATTT TAATTTTTCC TTTGTGATCT GAATGAATAA 001680 001681 CATCATCACT TAACACCTAT TGCCATTTCA AAGACAGAAT CCCAACAGGC TTTTCTGGGT ATGGACCCAT GCAATGGTTT 001760 001761 GTCTGCCTTT CAACAATTTG TATCATCTTG GCCATTTTGG GGAACAGGGA TTGTGCATGG GGAAGGATGG AAGAGGAAAA 001840 001841 CCAATATTTA TTTAACATTC AGTGGTAGTA AACACTGGGA TTAGTACTTA ATTAGAGTTG ATCCTCATAA TAAACTTGAT 001920 001921 CCCCATTTTA CAGATGAGTA AATTATAACT CAGAGAATTT CTAACTTGCC CAAAGTCATA CAACTAATAA ATTGTAAAGG 002000 002001 TGGGAGTTAA AGCAATTTTT TATTGAACTA TATAGAAAAT GTACAAATTA TTTATACACA TCTCCAGTTA TTACAAAGTG 002080 002081 AACTGCTAGG AATGTGAGTG GAATTGGTAA TGTCAGTTAA AGGCAGAAGG ACGCGCT |
Predicted Small Protein
Name | NONHSAT128446_smProtein_1166:1354 |
Length | 63 |
Molecular weight | 7385.4566 |
Aromaticity | 0.177419354839 |
Instability index | 89.4564516129 |
Isoelectric point | 6.23516845703 |
Runs | 8 |
Runs residual | 0.0246082949309 |
Runs probability | 0.036996555379 |
Amino acid sequence | MGLNIQLQVFFSSTFFFFQEQCPAVRSVCTRHKHITYLLQQYPKLLSSVLAECECFHEYE TF |
Secondary structure | LLLEEEEEEEEEEHHHLLLLLLLLHHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLL LL |
PRMN | - |
PiMo | - |