Difference between revisions of "NONHSAT129620"
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sequence = <dnaseq>AAAAGTCTGGGCTACCGGCGCGGCGTAGTGGATGCAGCATCCTAGTGGAGGACGCCCCTGTGttgctgaacctgtttgcatgagttgctcctgacggccctttaggatacttccatgtctgtagggtctagagtgacatctcctCCCCTCCCCTGACGAGATCTGCCCTCCTTGGCACTGTGCTTCCCCAGAGGGGTGGCCTCGCTGTTCCCATGGACATGGCCCAGGAGCCAGTGACCTTCAGGGACGTGGCCATCTACTTCTCAAGGGAGGAGTGGGCGTGTCTGGAACCCAGCCAGAGGGCCCTCTACCGGGACGTGATGCTGGACAACTTCAGCAGTGTGGCTGCTCTGGGTGAGCACGGGCTGAGCGCAGCGTGAGCACAGGGTGAGTGCTGGGAGAGCTCTGCCGCTGCCTCTGGGCCCAGCTCGTCCAGGACAGTAGTGGGGCCTCCCAGCTGAGGGGGCTCAGGAGCTAGAAGTTATTGGCTTATGTAGACAGAGGGGCCCACTCAGCGTTTCTCTCGGGCTCCCTGGAGGCAGCCTCAT</dnaseq>| | sequence = <dnaseq>AAAAGTCTGGGCTACCGGCGCGGCGTAGTGGATGCAGCATCCTAGTGGAGGACGCCCCTGTGttgctgaacctgtttgcatgagttgctcctgacggccctttaggatacttccatgtctgtagggtctagagtgacatctcctCCCCTCCCCTGACGAGATCTGCCCTCCTTGGCACTGTGCTTCCCCAGAGGGGTGGCCTCGCTGTTCCCATGGACATGGCCCAGGAGCCAGTGACCTTCAGGGACGTGGCCATCTACTTCTCAAGGGAGGAGTGGGCGTGTCTGGAACCCAGCCAGAGGGCCCTCTACCGGGACGTGATGCTGGACAACTTCAGCAGTGTGGCTGCTCTGGGTGAGCACGGGCTGAGCGCAGCGTGAGCACAGGGTGAGTGCTGGGAGAGCTCTGCCGCTGCCTCTGGGCCCAGCTCGTCCAGGACAGTAGTGGGGCCTCCCAGCTGAGGGGGCTCAGGAGCTAGAAGTTATTGGCTTATGTAGACAGAGGGGCCCACTCAGCGTTTCTCTCGGGCTCCCTGGAGGCAGCCTCAT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]][[Category:NONHSAG051510]] | + | [[Category:Sense]][[Category:NONHSAG051510]][[Category:Transcripts]] |
Latest revision as of 07:10, 17 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT129620 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
548 nt |
Genomic location |
chr8+:144766651..144773563 |
Exon number |
4 |
Exons |
144766651..144766712,144771374..144771471,144772227..144772293,144773243..144773563 |
Genome context |
|
Sequence |
000001 AAAAGTCTGG GCTACCGGCG CGGCGTAGTG GATGCAGCAT CCTAGTGGAG GACGCCCCTG TGttgctgaa cctgtttgca 000080
000081 tgagttgctc ctgacggccc tttaggatac ttccatgtct gtagggtcta gagtgacatc tcctCCCCTC CCCTGACGAG 000160 000161 ATCTGCCCTC CTTGGCACTG TGCTTCCCCA GAGGGGTGGC CTCGCTGTTC CCATGGACAT GGCCCAGGAG CCAGTGACCT 000240 000241 TCAGGGACGT GGCCATCTAC TTCTCAAGGG AGGAGTGGGC GTGTCTGGAA CCCAGCCAGA GGGCCCTCTA CCGGGACGTG 000320 000321 ATGCTGGACA ACTTCAGCAG TGTGGCTGCT CTGGGTGAGC ACGGGCTGAG CGCAGCGTGA GCACAGGGTG AGTGCTGGGA 000400 000401 GAGCTCTGCC GCTGCCTCTG GGCCCAGCTC GTCCAGGACA GTAGTGGGGC CTCCCAGCTG AGGGGGCTCA GGAGCTAGAA 000480 000481 GTTATTGGCT TATGTAGACA GAGGGGCCCA CTCAGCGTTT CTCTCGGGCT CCCTGGAGGC AGCCTCAT |
Predicted Small Protein
Name | NONHSAT129620_smProtein_212:379 |
Length | 56 |
Molecular weight | 6195.9028 |
Aromaticity | 0.109090909091 |
Instability index | 42.2945454545 |
Isoelectric point | 4.39508056641 |
Runs | 11 |
Runs residual | 0.0484848484848 |
Runs probability | 0.0244977597919 |
Amino acid sequence | MDMAQEPVTFRDVAIYFSREEWACLEPSQRALYRDVMLDNFSSVAALGEHGLSAA |
Secondary structure | LLLLLLLLEEHHHEEEELLHHHHLLLHHHHHHHHHHHHLLLHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |