Difference between revisions of "NONHSAT131277"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>tgagacttggcgaagtaggagccctgtgtgatcgtgcgtcagagtcggggctgagaccagccctggccagggcagttaccaggacggtctccggaggccgggattcgcggagggtccaccagcaggaagaaaccccaggaggaagaaaactcagacagatcgccggggaggcagcgcgggatcccagcctcaggcgtgcgcggacggtgtgcggATATCATGGAAATCAGGACAGTAGCAGTTGGGATTGTGGCAATCAAAGGGGTGGAAAGTGAATTCTATCTTGCAACGAACGAGGAAGGAAAACTCTATGCAAAGAAGGAATGCAATGAAGATTGTAACTTCAAAGATCTAATTCTGGAAAACCATTACAACACATATGCAGCAGCTAAATGGACAAACAACGGAGGGGAAATGTTTGTGGCCTTAAATCAAAAGGGGATTCCTGTAAGAGGAAAAAAAACAAAGAAAGAACAAAAAACAGCCCACTTTCTTCCTATGGCAATAACTTAATTGCATATGGTATATAAAGAACCAGTTCCAGCAGGGAGATTTCTTTAAGTGGACTGTTTTCTTTCTTCTCAAAATTTTCTTTCCTTTTATTTTCTAGTAATCAAGAAAGGCTGGAAAACTACTGAAAAACTGATCAAGCTGGACTTGCGCATTTATGTTTGTTTTAAGACACTGCATTAAAGAGACATTTGAAAAGTATACACAAAAATCAGATTTAGTAACTAAAGGTTGTACAAAATTGTAAAACTGGTTGTACAATCATGATGTTAGTAATAGTAATTTTTTTCTTAAATTAATTTACCCTTAAGAGTATGTTAGATTTGATTATCTGATAATGATTATTTAAATATTCCTATCTGCTTATAAAATGGCTGCTATAATAATAATAATGCAGATGATGTTATATAAGGTATATCAGACCTACAGGCTGCTGGCAGGATTTGTCAGATAATCAAGCCACACTAACTATGGAAAATGAGCAGCATTTTAAATGCTTTCTAGTGAAAAATTATAATCTACTTAAACTCTAATCAGAAAAAAAGAATATTCTCAAAAAAATCTATTATGAAAGTCAATAAAATAGATAATTTAACAAAAGTACAGGATTAGAACATGCTTATACCTATTAACAAGAACAAAATTTCTAATGCTGCTCAAGTGGAAAGGGTATTGCTAAAAGGATGTTTCCAAAAATCTTGTATATAAGATAGCAACAGTGATTGATGATAATACTGTACTTCATCTTACTTGCCACTAAATAACATTTTATAATTCC</dnaseq>| | sequence = <dnaseq>tgagacttggcgaagtaggagccctgtgtgatcgtgcgtcagagtcggggctgagaccagccctggccagggcagttaccaggacggtctccggaggccgggattcgcggagggtccaccagcaggaagaaaccccaggaggaagaaaactcagacagatcgccggggaggcagcgcgggatcccagcctcaggcgtgcgcggacggtgtgcggATATCATGGAAATCAGGACAGTAGCAGTTGGGATTGTGGCAATCAAAGGGGTGGAAAGTGAATTCTATCTTGCAACGAACGAGGAAGGAAAACTCTATGCAAAGAAGGAATGCAATGAAGATTGTAACTTCAAAGATCTAATTCTGGAAAACCATTACAACACATATGCAGCAGCTAAATGGACAAACAACGGAGGGGAAATGTTTGTGGCCTTAAATCAAAAGGGGATTCCTGTAAGAGGAAAAAAAACAAAGAAAGAACAAAAAACAGCCCACTTTCTTCCTATGGCAATAACTTAATTGCATATGGTATATAAAGAACCAGTTCCAGCAGGGAGATTTCTTTAAGTGGACTGTTTTCTTTCTTCTCAAAATTTTCTTTCCTTTTATTTTCTAGTAATCAAGAAAGGCTGGAAAACTACTGAAAAACTGATCAAGCTGGACTTGCGCATTTATGTTTGTTTTAAGACACTGCATTAAAGAGACATTTGAAAAGTATACACAAAAATCAGATTTAGTAACTAAAGGTTGTACAAAATTGTAAAACTGGTTGTACAATCATGATGTTAGTAATAGTAATTTTTTTCTTAAATTAATTTACCCTTAAGAGTATGTTAGATTTGATTATCTGATAATGATTATTTAAATATTCCTATCTGCTTATAAAATGGCTGCTATAATAATAATAATGCAGATGATGTTATATAAGGTATATCAGACCTACAGGCTGCTGGCAGGATTTGTCAGATAATCAAGCCACACTAACTATGGAAAATGAGCAGCATTTTAAATGCTTTCTAGTGAAAAATTATAATCTACTTAAACTCTAATCAGAAAAAAAGAATATTCTCAAAAAAATCTATTATGAAAGTCAATAAAATAGATAATTTAACAAAAGTACAGGATTAGAACATGCTTATACCTATTAACAAGAACAAAATTTCTAATGCTGCTCAAGTGGAAAGGGTATTGCTAAAAGGATGTTTCCAAAAATCTTGTATATAAGATAGCAACAGTGATTGATGATAATACTGTACTTCATCTTACTTGCCACTAAATAACATTTTATAATTCC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG052263]][[Category:Transcripts]] |
Latest revision as of 07:17, 17 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT131277 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1288 nt |
| Genomic location |
chr9-:41961778..42251589 |
| Exon number |
3 |
| Exons |
41961778..41962747,41963839..41963942,42251376..42251589 |
| Genome context |
|
| Sequence |
000001 tgagacttgg cgaagtagga gccctgtgtg atcgtgcgtc agagtcgggg ctgagaccag ccctggccag ggcagttacc 000080
000081 aggacggtct ccggaggccg ggattcgcgg agggtccacc agcaggaaga aaccccagga ggaagaaaac tcagacagat 000160 000161 cgccggggag gcagcgcggg atcccagcct caggcgtgcg cggacggtgt gcggATATCA TGGAAATCAG GACAGTAGCA 000240 000241 GTTGGGATTG TGGCAATCAA AGGGGTGGAA AGTGAATTCT ATCTTGCAAC GAACGAGGAA GGAAAACTCT ATGCAAAGAA 000320 000321 GGAATGCAAT GAAGATTGTA ACTTCAAAGA TCTAATTCTG GAAAACCATT ACAACACATA TGCAGCAGCT AAATGGACAA 000400 000401 ACAACGGAGG GGAAATGTTT GTGGCCTTAA ATCAAAAGGG GATTCCTGTA AGAGGAAAAA AAACAAAGAA AGAACAAAAA 000480 000481 ACAGCCCACT TTCTTCCTAT GGCAATAACT TAATTGCATA TGGTATATAA AGAACCAGTT CCAGCAGGGA GATTTCTTTA 000560 000561 AGTGGACTGT TTTCTTTCTT CTCAAAATTT TCTTTCCTTT TATTTTCTAG TAATCAAGAA AGGCTGGAAA ACTACTGAAA 000640 000641 AACTGATCAA GCTGGACTTG CGCATTTATG TTTGTTTTAA GACACTGCAT TAAAGAGACA TTTGAAAAGT ATACACAAAA 000720 000721 ATCAGATTTA GTAACTAAAG GTTGTACAAA ATTGTAAAAC TGGTTGTACA ATCATGATGT TAGTAATAGT AATTTTTTTC 000800 000801 TTAAATTAAT TTACCCTTAA GAGTATGTTA GATTTGATTA TCTGATAATG ATTATTTAAA TATTCCTATC TGCTTATAAA 000880 000881 ATGGCTGCTA TAATAATAAT AATGCAGATG ATGTTATATA AGGTATATCA GACCTACAGG CTGCTGGCAG GATTTGTCAG 000960 000961 ATAATCAAGC CACACTAACT ATGGAAAATG AGCAGCATTT TAAATGCTTT CTAGTGAAAA ATTATAATCT ACTTAAACTC 001040 001041 TAATCAGAAA AAAAGAATAT TCTCAAAAAA ATCTATTATG AAAGTCAATA AAATAGATAA TTTAACAAAA GTACAGGATT 001120 001121 AGAACATGCT TATACCTATT AACAAGAACA AAATTTCTAA TGCTGCTCAA GTGGAAAGGG TATTGCTAAA AGGATGTTTC 001200 001201 CAAAAATCTT GTATATAAGA TAGCAACAGT GATTGATGAT AATACTGTAC TTCATCTTAC TTGCCACTAA ATAACATTTT 001280 001281 ATAATTCC |
Predicted Small Protein
| Name | NONHSAT131277_smProtein_392:529 |
| Length | 46 |
| Molecular weight | 5044.7547 |
| Aromaticity | 0.0444444444444 |
| Instability index | 48.8555555556 |
| Isoelectric point | 10.1873168945 |
| Runs | 7 |
| Runs residual | 0.00669191919192 |
| Runs probability | 0.022774875716 |
| Amino acid sequence | MDKQRRGNVCGLKSKGDSCKRKKNKERTKNSPLSSYGNNLIAYGI |
| Secondary structure | LLLLLLLLEEEELLLLLLHHHLLLLLLLLLLLLLLLLLLEEEELL |
| PRMN | - |
| PiMo | - |
