Difference between revisions of "NONHSAT017676"
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==References== | ==References== | ||
| − | + | [http://www.lncrnadb.org/beta-globin-transcripts/ Annotation originally sourced from lncRNAdb.] | |
{{basic| | {{basic| | ||
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sequence = <dnaseq>AGGAGCCAGGAGAGATAGACCATGAGTAGAGGGCAGACATGGGAAAGGTGGGGGAGGCACAGCATAGCAGCATTTTTCATTCTACTACTACATGGGACTGCTCCCCTATACCCCCAGCTAGGGGCAAGTGCCTTGACTCCTATGTTTTCAGGATCATCATCTATAAAGTAAGAGTAATAATTGTGTCTATCTCATAAGGGTTATTATGAGGATCAAAGGAGATGCACACTCTCTGGACCAGTGGCCTAACAGTTCAGGACAGAGCTATGGGCTTCCTATGTATGGGTCAGTGGTCTCAATGTAGCAGGCAAGTTCCAGAAGATAGCATCAACCACTGTTAGAGATATACTGCCAGTCTCAGAGCCTGATGTTAATTTACAATGGGCTGGGACCTCCTCCATAAACCTCTAACCACTGCTGCATCAAATCGAATGCAGCTGGTAGACTTTTTTTAATGAAAGCTTACTTCATTAAAGATTAACCCAACAGGCACAATGAAATTGTCTAACACAACTTTGCCATCTAAAAAAATCTGACTTCACTGGAAAATGGAAGCCCAAGGTTCTGAAATGAGAAATTTTTAGGAATTGCACAGGAGTTGAGGGGAAACAAGTGTGAGGGATAGAACCACTGGAGACACGAGGAAATAGTGTAGATTTAGGCTGGAGGTAAATGAAAGAGAAGTGGGAATTAATACTTACTGAAATCTTTCTATATGTCAGGTGCCATTTTATGATATTTAATAATCTCATTACATATGGTAATTCTGTGAGATATGTATTATTGAACATACTATAATTAATACTAATGATAAGTAACACCTCTTGAGTACTTAGTATATGCTAGAATCAAATTTAAGTTTATCATATGAGGCCGGGCACGGTGGCTCATATATGGGATTACATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAATTGGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGTGAAACCCCTTCTCTACTAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>AGGAGCCAGGAGAGATAGACCATGAGTAGAGGGCAGACATGGGAAAGGTGGGGGAGGCACAGCATAGCAGCATTTTTCATTCTACTACTACATGGGACTGCTCCCCTATACCCCCAGCTAGGGGCAAGTGCCTTGACTCCTATGTTTTCAGGATCATCATCTATAAAGTAAGAGTAATAATTGTGTCTATCTCATAAGGGTTATTATGAGGATCAAAGGAGATGCACACTCTCTGGACCAGTGGCCTAACAGTTCAGGACAGAGCTATGGGCTTCCTATGTATGGGTCAGTGGTCTCAATGTAGCAGGCAAGTTCCAGAAGATAGCATCAACCACTGTTAGAGATATACTGCCAGTCTCAGAGCCTGATGTTAATTTACAATGGGCTGGGACCTCCTCCATAAACCTCTAACCACTGCTGCATCAAATCGAATGCAGCTGGTAGACTTTTTTTAATGAAAGCTTACTTCATTAAAGATTAACCCAACAGGCACAATGAAATTGTCTAACACAACTTTGCCATCTAAAAAAATCTGACTTCACTGGAAAATGGAAGCCCAAGGTTCTGAAATGAGAAATTTTTAGGAATTGCACAGGAGTTGAGGGGAAACAAGTGTGAGGGATAGAACCACTGGAGACACGAGGAAATAGTGTAGATTTAGGCTGGAGGTAAATGAAAGAGAAGTGGGAATTAATACTTACTGAAATCTTTCTATATGTCAGGTGCCATTTTATGATATTTAATAATCTCATTACATATGGTAATTCTGTGAGATATGTATTATTGAACATACTATAATTAATACTAATGATAAGTAACACCTCTTGAGTACTTAGTATATGCTAGAATCAAATTTAAGTTTATCATATGAGGCCGGGCACGGTGGCTCATATATGGGATTACATGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCAATTGGATCACCTGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATGGTGAAACCCCTTCTCTACTAAAAAATACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG007506]] | + | [[Category:Intergenic]][[Category:NONHSAG007506]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 05:44, 26 August 2015
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Contents
Annotated Information
Name
Beta-globin transcripts
Characteristics
>1 kb, intergenic RNAs transcribed from the beta-globin locus.
Function
Intergenic transcripts (or their transcription) are believed to participate in the developmental switch of beta-globin cluster genes, with proposed roles in chromatin remodeling and long-range cis-activation. RNAs may be processed by RNAi machinery.
Expression
Dynamically expressed during erythroid cell development.
Nuclear localised.
Conservation
Please input conservation information here.
Misc
Please input misc information here.
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Annotation originally sourced from lncRNAdb.
Basic Information
| Transcript ID |
NONHSAT017676 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1047 nt |
| Genomic location |
chr11-:5304905..5305952 |
| Exon number |
3 |
| Exons |
5304905..5305301,5305319..5305449,5305462..5305952 |
| Genome context |
|
| Sequence |
000001 AGGAGCCAGG AGAGATAGAC CATGAGTAGA GGGCAGACAT GGGAAAGGTG GGGGAGGCAC AGCATAGCAG CATTTTTCAT 000080
000081 TCTACTACTA CATGGGACTG CTCCCCTATA CCCCCAGCTA GGGGCAAGTG CCTTGACTCC TATGTTTTCA GGATCATCAT 000160 000161 CTATAAAGTA AGAGTAATAA TTGTGTCTAT CTCATAAGGG TTATTATGAG GATCAAAGGA GATGCACACT CTCTGGACCA 000240 000241 GTGGCCTAAC AGTTCAGGAC AGAGCTATGG GCTTCCTATG TATGGGTCAG TGGTCTCAAT GTAGCAGGCA AGTTCCAGAA 000320 000321 GATAGCATCA ACCACTGTTA GAGATATACT GCCAGTCTCA GAGCCTGATG TTAATTTACA ATGGGCTGGG ACCTCCTCCA 000400 000401 TAAACCTCTA ACCACTGCTG CATCAAATCG AATGCAGCTG GTAGACTTTT TTTAATGAAA GCTTACTTCA TTAAAGATTA 000480 000481 ACCCAACAGG CACAATGAAA TTGTCTAACA CAACTTTGCC ATCTAAAAAA ATCTGACTTC ACTGGAAAAT GGAAGCCCAA 000560 000561 GGTTCTGAAA TGAGAAATTT TTAGGAATTG CACAGGAGTT GAGGGGAAAC AAGTGTGAGG GATAGAACCA CTGGAGACAC 000640 000641 GAGGAAATAG TGTAGATTTA GGCTGGAGGT AAATGAAAGA GAAGTGGGAA TTAATACTTA CTGAAATCTT TCTATATGTC 000720 000721 AGGTGCCATT TTATGATATT TAATAATCTC ATTACATATG GTAATTCTGT GAGATATGTA TTATTGAACA TACTATAATT 000800 000801 AATACTAATG ATAAGTAACA CCTCTTGAGT ACTTAGTATA TGCTAGAATC AAATTTAAGT TTATCATATG AGGCCGGGCA 000880 000881 CGGTGGCTCA TATATGGGAT TACATGCCTG TAATCCCAGC ACTTTGGGAG GCCAAGGCAA TTGGATCACC TGAGGTCAGG 000960 000961 AGTTCCAGAC CAGCCTGGCC AACATGGTGA AACCCCTTCT CTACTAAAAA ATACAAAAAA AAAAAAAAAA AAAAAAAAAA 001040 001041 AAAAAAA |
