Difference between revisions of "Lnc-PRL-6:2"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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==Annotated Information== | ==Annotated Information== | ||
| + | ===Name=== | ||
| + | BX118339 | ||
| + | |||
| + | ===Characteristics=== | ||
| + | Longest identified isoform is 738bp with 4 exons. Deep sequencing has also identified two shorter isoforms [http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili (2011))]. Some exons overlap multiple SINEs | ||
| + | |||
| + | ===Function=== | ||
| + | Transcript disrupted by a balanced translocation, 46,XY,t(2;6)(p15;p22.3), in a patient with West Syndrome (a form of infant epilepsy). Lack of effect on other nearby genes or presence of mutations in known West Syndrome disease genes leads to possible implication of BX118339 in the clinical phenotype [http://www.ncbi.nlm.nih.gov/pubmed/22245136 (Vandeweyer (2012))]. | ||
| + | |||
| + | ===Expression=== | ||
| + | Transcript isoform(s) expressed in testis [http://www.ncbi.nlm.nih.gov/pubmed/21890647 (Cabili (2011))] and also reported in fetal brain [http://www.ncbi.nlm.nih.gov/pubmed/22245136 (Vandeweyer (2012))]. | ||
| + | |||
| + | ===Conservation=== | ||
| + | Please input conservation information here. | ||
| + | |||
| + | ===Misc=== | ||
| + | Please input misc information here. | ||
| + | |||
===Transcriptomic Nomeclature=== | ===Transcriptomic Nomeclature=== | ||
Please input transcriptomic nomeclature information here. | Please input transcriptomic nomeclature information here. | ||
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| − | |||
| − | |||
===Regulation=== | ===Regulation=== | ||
Please input regulation information here. | Please input regulation information here. | ||
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| − | |||
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===Allelic Information and Variation=== | ===Allelic Information and Variation=== | ||
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==References== | ==References== | ||
| − | + | [http://www.lncrnadb.org/BX118339/ Annotation originallay sourced from lncRNAdb.] | |
{{basic| | {{basic| | ||
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sequence = <dnaseq>TGAATATCAGCACGGATCACTGCAAAGAAGTTGGAACTCATCTCACATGAACTTCTCAGGTTCTCTTACAAGACCACCAACATTCTTCAAACATCAGTGAAATAAAACAGGAGGAGGGTTTCGAGCTCTGGATCCTCAGCCTGGAAATGTCACAATTTAATCCCAAAGGTTTGCTGTGAAGTTGTAAGCATGACAGTGTGAAACTCGACAGATTATTCTTGAATTCTTTGTTTGTTTTCGTTGTGACCCGACTCTCATAAAATTTATGTTTTCTTCCAAA</dnaseq>| | sequence = <dnaseq>TGAATATCAGCACGGATCACTGCAAAGAAGTTGGAACTCATCTCACATGAACTTCTCAGGTTCTCTTACAAGACCACCAACATTCTTCAAACATCAGTGAAATAAAACAGGAGGAGGGTTTCGAGCTCTGGATCCTCAGCCTGGAAATGTCACAATTTAATCCCAAAGGTTTGCTGTGAAGTTGTAAGCATGACAGTGTGAAACTCGACAGATTATTCTTGAATTCTTTGTTTGTTTTCGTTGTGACCCGACTCTCATAAAATTTATGTTTTCTTCCAAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-PRL-6]][[Category:NONHSAG043147]][[Category:Transcripts]] |
Latest revision as of 05:45, 26 August 2015
Please input one-sentence summary here.
Contents
Annotated Information
Name
BX118339
Characteristics
Longest identified isoform is 738bp with 4 exons. Deep sequencing has also identified two shorter isoforms (Cabili (2011)). Some exons overlap multiple SINEs
Function
Transcript disrupted by a balanced translocation, 46,XY,t(2;6)(p15;p22.3), in a patient with West Syndrome (a form of infant epilepsy). Lack of effect on other nearby genes or presence of mutations in known West Syndrome disease genes leads to possible implication of BX118339 in the clinical phenotype (Vandeweyer (2012)).
Expression
Transcript isoform(s) expressed in testis (Cabili (2011)) and also reported in fetal brain (Vandeweyer (2012)).
Conservation
Please input conservation information here.
Misc
Please input misc information here.
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Regulation
Please input regulation information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Annotation originallay sourced from lncRNAdb.
Basic Information
| Transcript ID |
lnc-PRL-6:2 |
| Source |
LNCipedia2.1 |
| Same with |
NONHSAT108039 |
| Classification |
intergenic |
| Length |
280 nt |
| Genomic location |
chr6-:21486540..21490497 |
| Exon number |
2 |
| Exons |
21486540..21486760,21490439..21490497 |
| Genome context |
|
| Sequence |
000001 TGAATATCAG CACGGATCAC TGCAAAGAAG TTGGAACTCA TCTCACATGA ACTTCTCAGG TTCTCTTACA AGACCACCAA 000080
000081 CATTCTTCAA ACATCAGTGA AATAAAACAG GAGGAGGGTT TCGAGCTCTG GATCCTCAGC CTGGAAATGT CACAATTTAA 000160 000161 TCCCAAAGGT TTGCTGTGAA GTTGTAAGCA TGACAGTGTG AAACTCGACA GATTATTCTT GAATTCTTTG TTTGTTTTCG 000240 000241 TTGTGACCCG ACTCTCATAA AATTTATGTT TTCTTCCAAA |
