Difference between revisions of "NONHSAT087716"
Chunlei Yu (talk | contribs) (→Transcriptomic Nomenclature) |
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| − | + | LINC00312, long intergenic non-protein coding RNA 312, could represent a potential biomarker for metastasis, progression and prognosis in nasopharyngeal carcinoma. | |
==Annotated Information== | ==Annotated Information== | ||
| − | === | + | ===Name=== |
| − | + | LINC00312: long intergenic non-protein coding RNA 312(HGNC nomenclature) | |
| + | |||
| + | ERR-10, ERR10, "estrogen receptor repressor 10", "LMCD1 downstream neighbor", LMCD1DN, NAG-7, NAG7, "nasopharyngeal carcinoma candidate 7" <ref name="ref1" /> | ||
| + | |||
| + | ===Characteristics=== | ||
| + | LINC00312 is a long intergenic non-coding RNA (lincRNA) located on 3p25.3<ref name="ref1" />. | ||
===Function=== | ===Function=== | ||
| − | + | [[File:LINC00312 expression patterns can distinguish the non-cancerous group from the NPC group.gif|right|thumb|400px|'''LINC00312 expression patterns can distinguish the non-cancerous group from the NPC group'''<ref name="ref1" />]] | |
| + | |||
| + | LINC00312 could predict a good prognosis of no lymph node metastasis and a poor prognosis of lymph node metastasis in NPC patients, which indicated that LINC00312 could represent a potential biomarker for metastasis, progression and prognosis in NPC<ref name="ref1" />. | ||
===Regulation=== | ===Regulation=== | ||
| − | + | LINC00312 was strongly negatively correlated with EBER-1 in NPC, which suggests that EBER-1 could possibly regulate the expression of LINC00312 through some genes and signaling pathways<ref name="ref1" />. | |
===Expression=== | ===Expression=== | ||
| − | + | LINC00312 was significantly down-regulated in NPC tissues compared with non-cancerous nasopharyngeal epithelium tissues. | |
| − | + | Overexpression of LINC00312 inhibits proliferation by arresting cell cycle progression from G1 to S phase and increases the adhesion, motility and invasion of cells, both in vitro and in vivo via the H-ras/p–c-Raf and JNK2/AP-1/MMP1 pathways in NPC HNE1 cells<ref name="ref1" />. | |
| − | |||
| − | |||
| − | |||
| − | = | ||
| − | |||
| − | + | ===Diseases=== | |
| + | * nasopharyngeal carcinoma<ref name="ref1" /> | ||
==Labs working on this lncRNA== | ==Labs working on this lncRNA== | ||
| − | + | * Department of Medical Laboratory Science, Xiangya School of Medicine, Central South University, Changsha, 410013, China.<ref name="ref1" /> | |
==References== | ==References== | ||
| − | + | <references> | |
| + | <ref name="ref1">Zhang W, Huang C, Gong Z, Zhao Y, Tang K, Li X, et al. Expression of LINC00312, a long intergenic non-coding RNA, is negatively correlated with tumor size but positively correlated with lymph node metastasis in nasopharyngeal carcinoma[J]. Journal of molecular histology. 2013,44(5):545-54.</ref>(1) | ||
| + | </references> | ||
{{basic| | {{basic| | ||
tID = NONHSAT087716| | tID = NONHSAT087716| | ||
source = NONCODE4.0| | source = NONCODE4.0| | ||
| − | same | + | same LINC00312,ERR-10, ERR10, LMCD1DN, NAG-7, NAG7| |
classification = intergenic| | classification = intergenic| | ||
length = 2887 nt| | length = 2887 nt| | ||
| Line 42: | Line 47: | ||
sequence = <dnaseq>TTTTCTTTTGATAGAATGTCAAACTTACGAAAAAAGTTACAAGAAGAGAACAAAgagctattagagggtgttgctgacacaatgctttatcactcttgaatattttcgtgtgtaattcctacaaataaggacattctcccacatagccacaatacaaccatcaaaatcaggaagttaacgctgatgtgtttctaccatgtaatcctcagatccaattcaagtgtcaccagctgtcccaataatgtcttttataacaaaaacattcagtctaagatcactcattctatttagttatcttgtctattcttcaatttggaagtgttctttgttctttcctgaatgttcatgaccttgacatcttagaagattaaaggttatttaaagttgttgagttaaatatccattaaattaggtttgtcagatatttcctcgaaattagattcagcttatgcattttttggaaggaataccacagaagtgatgttgttttctttctgttgcatccaatcagatgatacaggattttgatttgttccattactgttgacatgaattttgaacatttgataatgccagtatcagccagatttttccattgtaaagtcattcctttgtcctttgtatttaataagtatgtttagggactttgagactatgtcaatgtcctgttcttcatcaaaattccactcactcattcttagtattcattgacgtttactgatcgaactaattattattatgatagttgccaaatgttggtttttctaattcaatcatttctttagtgtttattagcattctactataaggaaaagcactatcttctccccatttattaattcacatatttacatcagcttggagttattgatttctattttattaaatagtttataattgattaccatccttatttattttaatgctcaaattgtcccaaattatggccaaagaaagctccttcaaactggttgctatgtccttttgacatggcccatcattctttaaacacattttacatctggcacaataacgtgctacatacccatcttgtatttttcctgccccatctttgaaatcagccattctcaaggggttccttcttaatCTGGCTGTTGTTGTGTTGGAACTCCTGGTACCATCTTAGAACCTTAAGGAGACAAGCGAACCAAGCCAATAAGCTTTCCATGATGCTGCTTAGAGTTAAACAGAGCCCAGGTACTAAGTTATGTCATGGAGACAGTGAACTAACCTCTGGACTGCTTGCTACATGAGACAATTGATTTTCTTATTTTCTATGTAGGGTGGTACATTTCCTCATTTTGAGATATTTCTTCAACATATAGCTTTTCATTAGTGGGGATTTTGTCAATTATAACCAAAAACAATGTGACGGATACCCAAGATGTTTCATGTTGTAGCTTGGGTGAATTACACATTTCTGAAGCCATTACACTTCCTAGTTTATTTGGAtttaagttgacaaataaaaattgcatatgtttatggtctataacatggtgtttcgatatatgtatacatcgtggaatggctaaatcaagctaacatatccattacctcacatagttattttttgtggtgagaacattttaaaaatattgtcttagcaattttcaaTCAAGCCTGTCCCATGGAGACACAAGCAATAGTGACATGAGCACTTGACTCGCTGGGTTATCAGGCTTTGGCTCCAAATGTTTGGCTTCAAATATGAAAAAGTTACATGAAAGATGAAACTATGCAATGGCATGGCTGTTGGTCATTCACATCTCTCTCTGCCAAGAATGGGGATGACGCTGTTGAAGGAAGAAATGTGTTTTCTCCTTTTTCTCAAGTGATATTTGCCTTAGGTCAGATTCTACTAGTTTAAAGCAAAACGATCTCCTGGTCTGATTCCTTTGGGTCTCTAATAATGGAAACTGCAAGGATCAGCATAAAGTGTTCCTTTGTTCTGACGTTGGTATAACATTGCTTCTTGAAAAATGAAAGTATTTGGACATACAGACAGAAGCAAtattattcaggtcttccttgttgcaagtgagggaaatccaattaaaactggtttaaacctaaaaaaaaaaaAAAGAAGAAAAGAAAAGAAAAAATATGAGAGGGGTTTTGCTTTCTGGAATCTGCTTTCTAGTCAGaaagtgcagaagaagggctagcttcaggaacaattggatgcagtagttcaaatcacaagttaagtctctgcttcttttctccatctctcttctgtcttcctccacactggctttattcttaggtaggcttacccagatagtcataaacacagccaccagtggcagctgggctcacttttgtccttggagccagtgagcccatgaaaaaggagcttctctttctggagcttcccaggggtaactttgatcagccaacaagggtcagtcctatgcttatcccttgaccaatctctgtgcccagagggcagggtactctgattggcaataccttcatcgtgggccaaccactgtggggaagggggagggattagaaaagacagccacacccaaatctcatgaaGCAGTCCCCTTTATTTTAAAAAAGTCCCTGTGAGAGCAACAGGAGCAAAGCATGGAGAAGAAGCAATCTTGGAGAAGCTGGAAGAGAACTGACCCAAAGAATCCAAGAGACTAAGACTGTGCAGGGTTGGGGAACGGAAGCTCACACAGGAGGCCTGGACAGAGCTGCAGCAGAGCCAGGAGAGAAGCCAAGTGGCACAGCTCATCTTGAAGTAATTATAATGCCACTAAAATTCTCATTTGTATTAATTTTTTTTAATTACTGGCAAGATAAGGCAAATGTTTTTAAAGGCCTAAATAAAATGATATTCCCTGAA</dnaseq>| | sequence = <dnaseq>TTTTCTTTTGATAGAATGTCAAACTTACGAAAAAAGTTACAAGAAGAGAACAAAgagctattagagggtgttgctgacacaatgctttatcactcttgaatattttcgtgtgtaattcctacaaataaggacattctcccacatagccacaatacaaccatcaaaatcaggaagttaacgctgatgtgtttctaccatgtaatcctcagatccaattcaagtgtcaccagctgtcccaataatgtcttttataacaaaaacattcagtctaagatcactcattctatttagttatcttgtctattcttcaatttggaagtgttctttgttctttcctgaatgttcatgaccttgacatcttagaagattaaaggttatttaaagttgttgagttaaatatccattaaattaggtttgtcagatatttcctcgaaattagattcagcttatgcattttttggaaggaataccacagaagtgatgttgttttctttctgttgcatccaatcagatgatacaggattttgatttgttccattactgttgacatgaattttgaacatttgataatgccagtatcagccagatttttccattgtaaagtcattcctttgtcctttgtatttaataagtatgtttagggactttgagactatgtcaatgtcctgttcttcatcaaaattccactcactcattcttagtattcattgacgtttactgatcgaactaattattattatgatagttgccaaatgttggtttttctaattcaatcatttctttagtgtttattagcattctactataaggaaaagcactatcttctccccatttattaattcacatatttacatcagcttggagttattgatttctattttattaaatagtttataattgattaccatccttatttattttaatgctcaaattgtcccaaattatggccaaagaaagctccttcaaactggttgctatgtccttttgacatggcccatcattctttaaacacattttacatctggcacaataacgtgctacatacccatcttgtatttttcctgccccatctttgaaatcagccattctcaaggggttccttcttaatCTGGCTGTTGTTGTGTTGGAACTCCTGGTACCATCTTAGAACCTTAAGGAGACAAGCGAACCAAGCCAATAAGCTTTCCATGATGCTGCTTAGAGTTAAACAGAGCCCAGGTACTAAGTTATGTCATGGAGACAGTGAACTAACCTCTGGACTGCTTGCTACATGAGACAATTGATTTTCTTATTTTCTATGTAGGGTGGTACATTTCCTCATTTTGAGATATTTCTTCAACATATAGCTTTTCATTAGTGGGGATTTTGTCAATTATAACCAAAAACAATGTGACGGATACCCAAGATGTTTCATGTTGTAGCTTGGGTGAATTACACATTTCTGAAGCCATTACACTTCCTAGTTTATTTGGAtttaagttgacaaataaaaattgcatatgtttatggtctataacatggtgtttcgatatatgtatacatcgtggaatggctaaatcaagctaacatatccattacctcacatagttattttttgtggtgagaacattttaaaaatattgtcttagcaattttcaaTCAAGCCTGTCCCATGGAGACACAAGCAATAGTGACATGAGCACTTGACTCGCTGGGTTATCAGGCTTTGGCTCCAAATGTTTGGCTTCAAATATGAAAAAGTTACATGAAAGATGAAACTATGCAATGGCATGGCTGTTGGTCATTCACATCTCTCTCTGCCAAGAATGGGGATGACGCTGTTGAAGGAAGAAATGTGTTTTCTCCTTTTTCTCAAGTGATATTTGCCTTAGGTCAGATTCTACTAGTTTAAAGCAAAACGATCTCCTGGTCTGATTCCTTTGGGTCTCTAATAATGGAAACTGCAAGGATCAGCATAAAGTGTTCCTTTGTTCTGACGTTGGTATAACATTGCTTCTTGAAAAATGAAAGTATTTGGACATACAGACAGAAGCAAtattattcaggtcttccttgttgcaagtgagggaaatccaattaaaactggtttaaacctaaaaaaaaaaaAAAGAAGAAAAGAAAAGAAAAAATATGAGAGGGGTTTTGCTTTCTGGAATCTGCTTTCTAGTCAGaaagtgcagaagaagggctagcttcaggaacaattggatgcagtagttcaaatcacaagttaagtctctgcttcttttctccatctctcttctgtcttcctccacactggctttattcttaggtaggcttacccagatagtcataaacacagccaccagtggcagctgggctcacttttgtccttggagccagtgagcccatgaaaaaggagcttctctttctggagcttcccaggggtaactttgatcagccaacaagggtcagtcctatgcttatcccttgaccaatctctgtgcccagagggcagggtactctgattggcaataccttcatcgtgggccaaccactgtggggaagggggagggattagaaaagacagccacacccaaatctcatgaaGCAGTCCCCTTTATTTTAAAAAAGTCCCTGTGAGAGCAACAGGAGCAAAGCATGGAGAAGAAGCAATCTTGGAGAAGCTGGAAGAGAACTGACCCAAAGAATCCAAGAGACTAAGACTGTGCAGGGTTGGGGAACGGAAGCTCACACAGGAGGCCTGGACAGAGCTGCAGCAGAGCCAGGAGAGAAGCCAAGTGGCACAGCTCATCTTGAAGTAATTATAATGCCACTAAAATTCTCATTTGTATTAATTTTTTTTAATTACTGGCAAGATAAGGCAAATGTTTTTAAAGGCCTAAATAAAATGATATTCCCTGAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]][[Category:NONHSAG034351]][[Category:Transcripts]] | + | [[Category:Intergenic]][[Category:NONHSAG034351]][[Category:Transcripts]][[Category:Transcripts]] |
Latest revision as of 06:28, 25 June 2016
LINC00312, long intergenic non-protein coding RNA 312, could represent a potential biomarker for metastasis, progression and prognosis in nasopharyngeal carcinoma.
Contents
Annotated Information
Name
LINC00312: long intergenic non-protein coding RNA 312(HGNC nomenclature)
ERR-10, ERR10, "estrogen receptor repressor 10", "LMCD1 downstream neighbor", LMCD1DN, NAG-7, NAG7, "nasopharyngeal carcinoma candidate 7" [1]
Characteristics
LINC00312 is a long intergenic non-coding RNA (lincRNA) located on 3p25.3[1].
Function
LINC00312 expression patterns can distinguish the non-cancerous group from the NPC group[1]
LINC00312 could predict a good prognosis of no lymph node metastasis and a poor prognosis of lymph node metastasis in NPC patients, which indicated that LINC00312 could represent a potential biomarker for metastasis, progression and prognosis in NPC[1].
Regulation
LINC00312 was strongly negatively correlated with EBER-1 in NPC, which suggests that EBER-1 could possibly regulate the expression of LINC00312 through some genes and signaling pathways[1].
Expression
LINC00312 was significantly down-regulated in NPC tissues compared with non-cancerous nasopharyngeal epithelium tissues. Overexpression of LINC00312 inhibits proliferation by arresting cell cycle progression from G1 to S phase and increases the adhesion, motility and invasion of cells, both in vitro and in vivo via the H-ras/p–c-Raf and JNK2/AP-1/MMP1 pathways in NPC HNE1 cells[1].
Diseases
- nasopharyngeal carcinoma[1]
Labs working on this lncRNA
- Department of Medical Laboratory Science, Xiangya School of Medicine, Central South University, Changsha, 410013, China.[1]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 1.5 1.6 1.7 Zhang W, Huang C, Gong Z, Zhao Y, Tang K, Li X, et al. Expression of LINC00312, a long intergenic non-coding RNA, is negatively correlated with tumor size but positively correlated with lymph node metastasis in nasopharyngeal carcinoma[J]. Journal of molecular histology. 2013,44(5):545-54.
Basic Information
| Transcript ID |
NONHSAT087716 |
| Source |
NONCODE4.0 |
| Same with |
{{{same}}} |
| Classification |
intergenic |
| Length |
2887 nt |
| Genomic location |
chr3+:8613468..8616354 |
| Exon number |
1 |
| Exons |
8613468..8616354 |
| Genome context |
|
| Sequence |
000001 TTTTCTTTTG ATAGAATGTC AAACTTACGA AAAAAGTTAC AAGAAGAGAA CAAAgagcta ttagagggtg ttgctgacac 000080
000081 aatgctttat cactcttgaa tattttcgtg tgtaattcct acaaataagg acattctccc acatagccac aatacaacca 000160 000161 tcaaaatcag gaagttaacg ctgatgtgtt tctaccatgt aatcctcaga tccaattcaa gtgtcaccag ctgtcccaat 000240 000241 aatgtctttt ataacaaaaa cattcagtct aagatcactc attctattta gttatcttgt ctattcttca atttggaagt 000320 000321 gttctttgtt ctttcctgaa tgttcatgac cttgacatct tagaagatta aaggttattt aaagttgttg agttaaatat 000400 000401 ccattaaatt aggtttgtca gatatttcct cgaaattaga ttcagcttat gcattttttg gaaggaatac cacagaagtg 000480 000481 atgttgtttt ctttctgttg catccaatca gatgatacag gattttgatt tgttccatta ctgttgacat gaattttgaa 000560 000561 catttgataa tgccagtatc agccagattt ttccattgta aagtcattcc tttgtccttt gtatttaata agtatgttta 000640 000641 gggactttga gactatgtca atgtcctgtt cttcatcaaa attccactca ctcattctta gtattcattg acgtttactg 000720 000721 atcgaactaa ttattattat gatagttgcc aaatgttggt ttttctaatt caatcatttc tttagtgttt attagcattc 000800 000801 tactataagg aaaagcacta tcttctcccc atttattaat tcacatattt acatcagctt ggagttattg atttctattt 000880 000881 tattaaatag tttataattg attaccatcc ttatttattt taatgctcaa attgtcccaa attatggcca aagaaagctc 000960 000961 cttcaaactg gttgctatgt ccttttgaca tggcccatca ttctttaaac acattttaca tctggcacaa taacgtgcta 001040 001041 catacccatc ttgtattttt cctgccccat ctttgaaatc agccattctc aaggggttcc ttcttaatCT GGCTGTTGTT 001120 001121 GTGTTGGAAC TCCTGGTACC ATCTTAGAAC CTTAAGGAGA CAAGCGAACC AAGCCAATAA GCTTTCCATG ATGCTGCTTA 001200 001201 GAGTTAAACA GAGCCCAGGT ACTAAGTTAT GTCATGGAGA CAGTGAACTA ACCTCTGGAC TGCTTGCTAC ATGAGACAAT 001280 001281 TGATTTTCTT ATTTTCTATG TAGGGTGGTA CATTTCCTCA TTTTGAGATA TTTCTTCAAC ATATAGCTTT TCATTAGTGG 001360 001361 GGATTTTGTC AATTATAACC AAAAACAATG TGACGGATAC CCAAGATGTT TCATGTTGTA GCTTGGGTGA ATTACACATT 001440 001441 TCTGAAGCCA TTACACTTCC TAGTTTATTT GGAtttaagt tgacaaataa aaattgcata tgtttatggt ctataacatg 001520 001521 gtgtttcgat atatgtatac atcgtggaat ggctaaatca agctaacata tccattacct cacatagtta ttttttgtgg 001600 001601 tgagaacatt ttaaaaatat tgtcttagca attttcaaTC AAGCCTGTCC CATGGAGACA CAAGCAATAG TGACATGAGC 001680 001681 ACTTGACTCG CTGGGTTATC AGGCTTTGGC TCCAAATGTT TGGCTTCAAA TATGAAAAAG TTACATGAAA GATGAAACTA 001760 001761 TGCAATGGCA TGGCTGTTGG TCATTCACAT CTCTCTCTGC CAAGAATGGG GATGACGCTG TTGAAGGAAG AAATGTGTTT 001840 001841 TCTCCTTTTT CTCAAGTGAT ATTTGCCTTA GGTCAGATTC TACTAGTTTA AAGCAAAACG ATCTCCTGGT CTGATTCCTT 001920 001921 TGGGTCTCTA ATAATGGAAA CTGCAAGGAT CAGCATAAAG TGTTCCTTTG TTCTGACGTT GGTATAACAT TGCTTCTTGA 002000 002001 AAAATGAAAG TATTTGGACA TACAGACAGA AGCAAtatta ttcaggtctt ccttgttgca agtgagggaa atccaattaa 002080 002081 aactggttta aacctaaaaa aaaaaaAAAG AAGAAAAGAA AAGAAAAAAT ATGAGAGGGG TTTTGCTTTC TGGAATCTGC 002160 002161 TTTCTAGTCA Gaaagtgcag aagaagggct agcttcagga acaattggat gcagtagttc aaatcacaag ttaagtctct 002240 002241 gcttcttttc tccatctctc ttctgtcttc ctccacactg gctttattct taggtaggct tacccagata gtcataaaca 002320 002321 cagccaccag tggcagctgg gctcactttt gtccttggag ccagtgagcc catgaaaaag gagcttctct ttctggagct 002400 002401 tcccaggggt aactttgatc agccaacaag ggtcagtcct atgcttatcc cttgaccaat ctctgtgccc agagggcagg 002480 002481 gtactctgat tggcaatacc ttcatcgtgg gccaaccact gtggggaagg gggagggatt agaaaagaca gccacaccca 002560 002561 aatctcatga aGCAGTCCCC TTTATTTTAA AAAAGTCCCT GTGAGAGCAA CAGGAGCAAA GCATGGAGAA GAAGCAATCT 002640 002641 TGGAGAAGCT GGAAGAGAAC TGACCCAAAG AATCCAAGAG ACTAAGACTG TGCAGGGTTG GGGAACGGAA GCTCACACAG 002720 002721 GAGGCCTGGA CAGAGCTGCA GCAGAGCCAG GAGAGAAGCC AAGTGGCACA GCTCATCTTG AAGTAATTAT AATGCCACTA 002800 002801 AAATTCTCAT TTGTATTAAT TTTTTTTAAT TACTGGCAAG ATAAGGCAAA TGTTTTTAAA GGCCTAAATA AAATGATATT 002880 002881 CCCTGAA |
