Difference between revisions of "ENST00000553157.1"

From LncRNAWiki
Jump to: navigation, search
 
(16 intermediate revisions by 2 users not shown)
Line 1: Line 1:
Please input one-sentence summary here.
+
 
  
 
==Annotated Information==
 
==Annotated Information==
 
===Name===
 
===Name===
KDM5BAS1
 
  
 
===Characteristics===
 
===Characteristics===
Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product.
 
  
 
===Function===
 
===Function===
KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand.
 
  
 
===Expression===
 
===Expression===
Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues.
+
 
  
 
===Conservation===
 
===Conservation===
Line 35: Line 32:
  
 
==Labs working on this lncRNA==
 
==Labs working on this lncRNA==
Please input related labs here.
 
  
 
==References==
 
==References==
Please input cited references here.
 
  
 
{{basic|
 
{{basic|
 
tID = ENST00000553157.1|
 
tID = ENST00000553157.1|
 
source = Gencode19|
 
source = Gencode19|
same = lnc-RP11-480I12.4.1-1:2|
+
same = lnc-RP11-480I12.4.1-1:2|ENST00000425295.1|ENST00000417262.1
 
classification = intergenic|
 
classification = intergenic|
 
length = 551 nt|
 
length = 551 nt|

Latest revision as of 11:48, 30 June 2016


Annotated Information

Name

Characteristics

Function

Expression

Conservation

Please input conservation information here.

Misc

Please input misc information here.

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Regulation

Please input regulation information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

References

Basic Information

Transcript ID

ENST00000553157.1

Source

Gencode19

Same with

lnc-RP11-480I12.4.1-1:2

Classification

{{{classification}}}

Length

551 nt

Genomic location

chr1+:202780082..202781284

Exon number

2

Exons

202780082..202780498,202781151..202781284

Genome context

Sequence
000001 AGAGGCCGGA CCTGGGCAAC CCCAGCCTGG AGGTGCCGGG GCCGGAGCTC CCAGAGGGCT GGGTGCGAGG CCTAGGCGGG 000080
000081 GTCAGGTTCG GGTTCCTAGG CCATAGCGGA GCTGCAGCCC AGGCGGCCGG AGCGGAACCC AGCCCCGCTC CGAGTGCCAC 000160
000161 GTCTCCAGGA ACCCCCTCCT TACTCTTGGA CAACACTCCG CCCCCGCCCG GGCCTCCGTC CCCCAAACCG CCCTCATTTG 000240
000241 TGCAGCGCCA GATCCTTCGG ACACATCCCT AGGTGTCTCC ATCCTCATTC GGTCCATCCA ACTCCCAGAC CTCACGTCAA 000320
000321 CCGGCTGCAC CCCACTTTCC AGCCTGCGCC CCAGATCTGC AGCCTTCGCC CCTAGATACA CCCGCCTGGT GATGAGGCGC 000400
000401 TCCTCGCGTT CCTTCCGGCA CGTGGCACAC GCTCCACAAA TATTTGTTGA AAGGGAGGGT AAATGGCCTT GAGTTTCTGT 000480
000481 GGCTACCATT GGCTGAGGAT GGAGCTTTGG GCTGGACAAA GAAGAATCTG GTTGACCACA TGAAGCAGGA A
[back to top]