Difference between revisions of "LINC00673"

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(Created page with "==Annotated Information== ===Approved Symbol=== LINC00673 ===Approved Name=== long intergenic non-protein coding RNA 673 ===Previous Symbols=== _ ===Synonyms=== HI-LNC75 ===Ch...")
 
 
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==Annotated Information==
 
==Annotated Information==
 
===Approved Symbol===
 
===Approved Symbol===
LINC00673
+
LINC00673:long intergenic non-protein coding RNA 673
===Approved Name===
 
long intergenic non-protein coding RNA 673
 
===Previous Symbols===
 
_
 
 
===Synonyms===
 
===Synonyms===
HI-LNC75
+
HI-LNC75<ref name="ref1" />
 
===Chromosome===
 
===Chromosome===
 
17q24.3
 
17q24.3
 
===RefSeq ID===
 
===RefSeq ID===
 
NR_036488
 
NR_036488
===OMIM ID===
 
_
 
===Ensembl ID===
 
_
 
 
===pubmed IDs===
 
===pubmed IDs===
 
23040067
 
23040067
 +
===Characterastics===
 +
HI-LNC75 is human islet lncRNAs which was found to be highly cell-type specific, developmentally regulated, and tightly linked to the differentiation of ES cell-derived islet-cells. <ref name="ref1" />
 +
===Disease===
 +
* type 2 diabetes<ref name="ref1" />
 +
 +
===Function===
 +
[[File:Knockdown of HI-LNC25 in β-cells causes downregulation of GLIS3.jpg|right|thumb|400px|'''Knockdown of HI-LNC25 in β-cells causes downregulation of GLIS3'''<ref name="ref1" />]]
 +
 +
HI-LNC75 acts as a positive regulator of an islet mRNA GLIS3.<ref name="ref1" />
 +
 +
===Expression===
 +
HI-LNC45 is significantly increased decreased in type 2 diabetes.<ref name="ref1" />
 +
===labs working on this lncRNA===
 +
* Genomic Programming of Beta Cells Laboratory, Institut d'Investigacions Biomèdiques August Pi I Sunyer, 08036 Barcelona, Spain.<ref name="ref1" />
 +
 +
===References===
 +
<references>
 +
<ref name="ref1">Moran I, Akerman I, van de Bunt M, Xie R, Benazra M, Nammo T, et al. Human beta cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes[J]. Cell metabolism. 2012,16(4):435-48.</ref>(1)
 +
</references>
 
===Sequence===
 
===Sequence===
 
>gi|302318969|ref|NR_036488.1| Homo sapiens long intergenic non-protein coding RNA 673 (LINC00673), long non-coding RNA
 
>gi|302318969|ref|NR_036488.1| Homo sapiens long intergenic non-protein coding RNA 673 (LINC00673), long non-coding RNA
 
<dnaseq>AGGGCGCGCAGGCGGCGCGGGTGCGCGGTGCGGCGCTGGTATCCAGAGGACGCGGTCACCGCCTCTGGCATTTGTCGTTCTGCGCTTCTCCGCAAGGACCCTCTGTTAGGCAGGCGCCCACCGTAAGCCTCCCGGGCCTTGTGAACCTGCAAACCCAAGTCTGAGAGACGATCCGCCTTCAGCGCTTTCCAGCTTGGCAGAGAGGCTTTCCCGGCGGGGATCTTTGGTTGGCGCTGGCGATGCGCGGGGAAGAAAGGCGAGGAGCGGCGTCCAGGCTGGGTGATGTCCCAGCACGAGTAGGCGGGATGCGCTCGCTTGGTCCTCCGGGCGCCCGGTCCCTGCCCGCGTCGCGCGCCCACCCCTGGGGACGAGAAGGCGGCCGCCTGAGGACCCCCGCCCGCGACCTCCGCGAGTCTGGAGCGCAGAGGACAGGGTCTGGCTGCTCTTTGGCCTTGGATGGAAAGTGGGGAATTGGGTGGGGGGCTGCGGACCCCTTAACGTGGATTACTTGGTGTGTATCAGCTGGGCTCAGAAGACCCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAGGTATTTTTCCCTCTCCACCCTGGTCTTCTCCTGTAACGTGTGGCCGCCTTTTCCAGCACGGCCTCCTGCCTTCCTGGTGCACTTTTTGGAGAACGTGGTGGAATCAGAGGTTTCTGGCTGACTCGGTGGGTGCTTTGAACCAGGAAAGGACAAGAAAGAGGATGGGAAGGACTGATCCACATTCCCACCAGGAAGTTTAGCAGAACCCCCGCGTGCCACCTGGACCCCTTGGAAGGACCTGGCTCAGGCTGGACCACCTCTTGAGAGGCAGGAGCTCTGGATTTGATCAAGAATTCTTTGCTGAGCATGGTGCCTCATGCCTATAATCCCAACACTTTGGGAGGCCAGTGTGGGAGGATCTCTTGAGCCCAGGAGTTCAAGACTAGCCTGGGCAACACAGAGAGACCCCATCTCTAAAATAATAATAATAATAAAATAAAAAATTAGCAGGGCATGGTGGCATGTGCCTGTAGTCCCAGCTACCCAGGAGGCTGAGGCAAGAGGATGGCTGGAGCCTGGGATGTTGAGGCTGCAATGAACTGTGATTACCCCACTGCACTCCAGCCTGGGCAAAAGAGCGAGAGACCCTGTCTCAAATAATAATAATAATAATAATCTTATTTTGGAGAATAAAGAGACCTCTGGATTTGAGGTGCCATTTGGGTAGAAAGAAAAGACGTTTACACCGAGAAATAGTCTGTGTTGCCCTGAAGGAGCAGAGGGATGCATCGCTGGAGGTGACCTACAGTTGAAGAAGACTCATTATGACAGACCTTGTCCTTCTTCCTTGTGGAAAGTGTTTCCTCTGCTGCTACTGCTCATGAGACTCTTCCCCCTCCCTGTCCCAGGGAACCAAAGGGCTTTCTACCACACCCTTTCTTGCCCCCCGCCTCCCATGTCTGCTGTGCCTTTGTACTCAGCAATTCTTGTTTGCTCCATTATCTTCCAGCCGGATACAGAGTGAATAGTTAACCACACTTAGGTCAAATAGGATCTAAATTTTTGTTCCTGCTCCGTGTAAAGAGGCCAGTGTTTGTGTGTTGCAAGCAGCCTTGGAATAGTAACTCTTCTCATTTGTTTGGGATCTGGCCACCAAGTTCCAGAATGATACACGGATCAGTGCAGAAGTTCATCAGGCTCTCGGACCTTAGGGCTGTTGGAGAAGGCTTCAGCAGCAGAACTGATGGTGAAGGCTCGTGTTCTCCATCCTCAACTTTCTTTGCTTCGATCATACACAAGAATACATTTGGAAGGGCAAAAAATGAACACTGTCGTTCATTGCAGCCGTGTTTTGTGACACAGATGCACAGTCTGCTGTGAAGACCTTCTCTCAAGTGGCATTTGGGAGTCCATGCCAGATCATGGTGCTTCATGAGAGACTGACAGCTATCAGGGGTTGTGGCACTTAGTGAGGACTCTCCTCCCCCAGTGTGTGCTGATGACACATACACACCTGACAATAGCTTGAGTCTTCTCTGTTCCTTTTACTCTGTAGCCAACATACACATGATTTAAAACCCTTTCTAAATATCTATCATGGTTCATCCTTGTCCAAATGCAGAGTCAGAGCTATTTGTACTTCATTATTATTTCCAAGGCGAATAGTTGGCTTTCTTTTTGCAAAAATAATTAAAGTTTTTGTATGTTGCAGTTGCAAAAAAAAAAAAAAAAAA</dnaseq>
 
<dnaseq>AGGGCGCGCAGGCGGCGCGGGTGCGCGGTGCGGCGCTGGTATCCAGAGGACGCGGTCACCGCCTCTGGCATTTGTCGTTCTGCGCTTCTCCGCAAGGACCCTCTGTTAGGCAGGCGCCCACCGTAAGCCTCCCGGGCCTTGTGAACCTGCAAACCCAAGTCTGAGAGACGATCCGCCTTCAGCGCTTTCCAGCTTGGCAGAGAGGCTTTCCCGGCGGGGATCTTTGGTTGGCGCTGGCGATGCGCGGGGAAGAAAGGCGAGGAGCGGCGTCCAGGCTGGGTGATGTCCCAGCACGAGTAGGCGGGATGCGCTCGCTTGGTCCTCCGGGCGCCCGGTCCCTGCCCGCGTCGCGCGCCCACCCCTGGGGACGAGAAGGCGGCCGCCTGAGGACCCCCGCCCGCGACCTCCGCGAGTCTGGAGCGCAGAGGACAGGGTCTGGCTGCTCTTTGGCCTTGGATGGAAAGTGGGGAATTGGGTGGGGGGCTGCGGACCCCTTAACGTGGATTACTTGGTGTGTATCAGCTGGGCTCAGAAGACCCACGACCTCTTCTCCATCCGTGGATTGATTTGTTCTGCTTAACAGCTGGGTCGCCAAGCTGGAGGTATTTTTCCCTCTCCACCCTGGTCTTCTCCTGTAACGTGTGGCCGCCTTTTCCAGCACGGCCTCCTGCCTTCCTGGTGCACTTTTTGGAGAACGTGGTGGAATCAGAGGTTTCTGGCTGACTCGGTGGGTGCTTTGAACCAGGAAAGGACAAGAAAGAGGATGGGAAGGACTGATCCACATTCCCACCAGGAAGTTTAGCAGAACCCCCGCGTGCCACCTGGACCCCTTGGAAGGACCTGGCTCAGGCTGGACCACCTCTTGAGAGGCAGGAGCTCTGGATTTGATCAAGAATTCTTTGCTGAGCATGGTGCCTCATGCCTATAATCCCAACACTTTGGGAGGCCAGTGTGGGAGGATCTCTTGAGCCCAGGAGTTCAAGACTAGCCTGGGCAACACAGAGAGACCCCATCTCTAAAATAATAATAATAATAAAATAAAAAATTAGCAGGGCATGGTGGCATGTGCCTGTAGTCCCAGCTACCCAGGAGGCTGAGGCAAGAGGATGGCTGGAGCCTGGGATGTTGAGGCTGCAATGAACTGTGATTACCCCACTGCACTCCAGCCTGGGCAAAAGAGCGAGAGACCCTGTCTCAAATAATAATAATAATAATAATCTTATTTTGGAGAATAAAGAGACCTCTGGATTTGAGGTGCCATTTGGGTAGAAAGAAAAGACGTTTACACCGAGAAATAGTCTGTGTTGCCCTGAAGGAGCAGAGGGATGCATCGCTGGAGGTGACCTACAGTTGAAGAAGACTCATTATGACAGACCTTGTCCTTCTTCCTTGTGGAAAGTGTTTCCTCTGCTGCTACTGCTCATGAGACTCTTCCCCCTCCCTGTCCCAGGGAACCAAAGGGCTTTCTACCACACCCTTTCTTGCCCCCCGCCTCCCATGTCTGCTGTGCCTTTGTACTCAGCAATTCTTGTTTGCTCCATTATCTTCCAGCCGGATACAGAGTGAATAGTTAACCACACTTAGGTCAAATAGGATCTAAATTTTTGTTCCTGCTCCGTGTAAAGAGGCCAGTGTTTGTGTGTTGCAAGCAGCCTTGGAATAGTAACTCTTCTCATTTGTTTGGGATCTGGCCACCAAGTTCCAGAATGATACACGGATCAGTGCAGAAGTTCATCAGGCTCTCGGACCTTAGGGCTGTTGGAGAAGGCTTCAGCAGCAGAACTGATGGTGAAGGCTCGTGTTCTCCATCCTCAACTTTCTTTGCTTCGATCATACACAAGAATACATTTGGAAGGGCAAAAAATGAACACTGTCGTTCATTGCAGCCGTGTTTTGTGACACAGATGCACAGTCTGCTGTGAAGACCTTCTCTCAAGTGGCATTTGGGAGTCCATGCCAGATCATGGTGCTTCATGAGAGACTGACAGCTATCAGGGGTTGTGGCACTTAGTGAGGACTCTCCTCCCCCAGTGTGTGCTGATGACACATACACACCTGACAATAGCTTGAGTCTTCTCTGTTCCTTTTACTCTGTAGCCAACATACACATGATTTAAAACCCTTTCTAAATATCTATCATGGTTCATCCTTGTCCAAATGCAGAGTCAGAGCTATTTGTACTTCATTATTATTTCCAAGGCGAATAGTTGGCTTTCTTTTTGCAAAAATAATTAAAGTTTTTGTATGTTGCAGTTGCAAAAAAAAAAAAAAAAAA</dnaseq>

Latest revision as of 02:53, 2 July 2016

Annotated Information

Approved Symbol

LINC00673:long intergenic non-protein coding RNA 673

Synonyms

HI-LNC75[1]

Chromosome

17q24.3

RefSeq ID

NR_036488

pubmed IDs

23040067

Characterastics

HI-LNC75 is human islet lncRNAs which was found to be highly cell-type specific, developmentally regulated, and tightly linked to the differentiation of ES cell-derived islet-cells. [1]

Disease

  • type 2 diabetes[1]

Function

Knockdown of HI-LNC25 in β-cells causes downregulation of GLIS3[1]

HI-LNC75 acts as a positive regulator of an islet mRNA GLIS3.[1]

Expression

HI-LNC45 is significantly increased decreased in type 2 diabetes.[1]

labs working on this lncRNA

  • Genomic Programming of Beta Cells Laboratory, Institut d'Investigacions Biomèdiques August Pi I Sunyer, 08036 Barcelona, Spain.[1]

References

  1. 1.0 1.1 1.2 1.3 1.4 1.5 1.6 Moran I, Akerman I, van de Bunt M, Xie R, Benazra M, Nammo T, et al. Human beta cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes[J]. Cell metabolism. 2012,16(4):435-48.

Sequence

>gi|302318969|ref|NR_036488.1| Homo sapiens long intergenic non-protein coding RNA 673 (LINC00673), long non-coding RNA

000001 AGGGCGCGCA GGCGGCGCGG GTGCGCGGTG CGGCGCTGGT ATCCAGAGGA CGCGGTCACC GCCTCTGGCA TTTGTCGTTC 000080
000081 TGCGCTTCTC CGCAAGGACC CTCTGTTAGG CAGGCGCCCA CCGTAAGCCT CCCGGGCCTT GTGAACCTGC AAACCCAAGT 000160
000161 CTGAGAGACG ATCCGCCTTC AGCGCTTTCC AGCTTGGCAG AGAGGCTTTC CCGGCGGGGA TCTTTGGTTG GCGCTGGCGA 000240
000241 TGCGCGGGGA AGAAAGGCGA GGAGCGGCGT CCAGGCTGGG TGATGTCCCA GCACGAGTAG GCGGGATGCG CTCGCTTGGT 000320
000321 CCTCCGGGCG CCCGGTCCCT GCCCGCGTCG CGCGCCCACC CCTGGGGACG AGAAGGCGGC CGCCTGAGGA CCCCCGCCCG 000400
000401 CGACCTCCGC GAGTCTGGAG CGCAGAGGAC AGGGTCTGGC TGCTCTTTGG CCTTGGATGG AAAGTGGGGA ATTGGGTGGG 000480
000481 GGGCTGCGGA CCCCTTAACG TGGATTACTT GGTGTGTATC AGCTGGGCTC AGAAGACCCA CGACCTCTTC TCCATCCGTG 000560
000561 GATTGATTTG TTCTGCTTAA CAGCTGGGTC GCCAAGCTGG AGGTATTTTT CCCTCTCCAC CCTGGTCTTC TCCTGTAACG 000640
000641 TGTGGCCGCC TTTTCCAGCA CGGCCTCCTG CCTTCCTGGT GCACTTTTTG GAGAACGTGG TGGAATCAGA GGTTTCTGGC 000720
000721 TGACTCGGTG GGTGCTTTGA ACCAGGAAAG GACAAGAAAG AGGATGGGAA GGACTGATCC ACATTCCCAC CAGGAAGTTT 000800
000801 AGCAGAACCC CCGCGTGCCA CCTGGACCCC TTGGAAGGAC CTGGCTCAGG CTGGACCACC TCTTGAGAGG CAGGAGCTCT 000880
000881 GGATTTGATC AAGAATTCTT TGCTGAGCAT GGTGCCTCAT GCCTATAATC CCAACACTTT GGGAGGCCAG TGTGGGAGGA 000960
000961 TCTCTTGAGC CCAGGAGTTC AAGACTAGCC TGGGCAACAC AGAGAGACCC CATCTCTAAA ATAATAATAA TAATAAAATA 001040
001041 AAAAATTAGC AGGGCATGGT GGCATGTGCC TGTAGTCCCA GCTACCCAGG AGGCTGAGGC AAGAGGATGG CTGGAGCCTG 001120
001121 GGATGTTGAG GCTGCAATGA ACTGTGATTA CCCCACTGCA CTCCAGCCTG GGCAAAAGAG CGAGAGACCC TGTCTCAAAT 001200
001201 AATAATAATA ATAATAATCT TATTTTGGAG AATAAAGAGA CCTCTGGATT TGAGGTGCCA TTTGGGTAGA AAGAAAAGAC 001280
001281 GTTTACACCG AGAAATAGTC TGTGTTGCCC TGAAGGAGCA GAGGGATGCA TCGCTGGAGG TGACCTACAG TTGAAGAAGA 001360
001361 CTCATTATGA CAGACCTTGT CCTTCTTCCT TGTGGAAAGT GTTTCCTCTG CTGCTACTGC TCATGAGACT CTTCCCCCTC 001440
001441 CCTGTCCCAG GGAACCAAAG GGCTTTCTAC CACACCCTTT CTTGCCCCCC GCCTCCCATG TCTGCTGTGC CTTTGTACTC 001520
001521 AGCAATTCTT GTTTGCTCCA TTATCTTCCA GCCGGATACA GAGTGAATAG TTAACCACAC TTAGGTCAAA TAGGATCTAA 001600
001601 ATTTTTGTTC CTGCTCCGTG TAAAGAGGCC AGTGTTTGTG TGTTGCAAGC AGCCTTGGAA TAGTAACTCT TCTCATTTGT 001680
001681 TTGGGATCTG GCCACCAAGT TCCAGAATGA TACACGGATC AGTGCAGAAG TTCATCAGGC TCTCGGACCT TAGGGCTGTT 001760
001761 GGAGAAGGCT TCAGCAGCAG AACTGATGGT GAAGGCTCGT GTTCTCCATC CTCAACTTTC TTTGCTTCGA TCATACACAA 001840
001841 GAATACATTT GGAAGGGCAA AAAATGAACA CTGTCGTTCA TTGCAGCCGT GTTTTGTGAC ACAGATGCAC AGTCTGCTGT 001920
001921 GAAGACCTTC TCTCAAGTGG CATTTGGGAG TCCATGCCAG ATCATGGTGC TTCATGAGAG ACTGACAGCT ATCAGGGGTT 002000
002001 GTGGCACTTA GTGAGGACTC TCCTCCCCCA GTGTGTGCTG ATGACACATA CACACCTGAC AATAGCTTGA GTCTTCTCTG 002080
002081 TTCCTTTTAC TCTGTAGCCA ACATACACAT GATTTAAAAC CCTTTCTAAA TATCTATCAT GGTTCATCCT TGTCCAAATG 002160
002161 CAGAGTCAGA GCTATTTGTA CTTCATTATT ATTTCCAAGG CGAATAGTTG GCTTTCTTTT TGCAAAAATA ATTAAAGTTT 002240
002241 TTGTATGTTG CAGTTGCAAA AAAAAAAAAA AAAAA