Difference between revisions of "MDC1-AS1"
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===Cellular Localization=== | ===Cellular Localization=== | ||
− | MDC1-AS | + | MDC1-AS primarily exists in the nuclear fraction <ref name="ref1" />. |
===Function=== | ===Function=== | ||
+ | MDC1-AS acts as a tumor suppressor in bladder cancer and exerts positive regulatory effect on its neighboring coding gene MDC1.<ref name="ref1" /> | ||
− | MDC1-AS, | + | MDC1-AS exhibits significant decreases in proliferation,colony formation, migration and invasion.<ref name="ref1" /> |
+ | |||
+ | ===Diseases=== | ||
+ | MDC1-AS may act as a tumor suppressor in bladder cancer <ref name="ref1" />. | ||
===Expression=== | ===Expression=== | ||
− | [[File:Dysregulation of MDC1-AS and MDC1 expression level.jpg|right|thumb| | + | [[File:Dysregulation of MDC1-AS and MDC1 expression level.jpg|right|thumb|600px|''(A) MDC1-AS levels in cancerous tissues were significantly lower than those in the noncancerous tissues. (B) MDC1 was down-regulated in bladder cancerous tissues, compared with that in adjacent normal tissues. (C) Expression levels of MDC1-AS and MDC1 in tissues were significantly correlated in a positive direction. (D) Both MDC1-AS and MDC1 were decreased in bladder cancer cells T24 and EJ, compared with those in normal cell line 293A.''' <ref name="ref1" />.]] |
− | The expression levels of MDC1-AS | + | MDC1-AS levels in cancerous tissues are evidently lower than those in the noncancerous tissues <ref name="ref1" />. |
+ | |||
+ | MDC1 is down-regulated in bladder cancer tissues, which was concordant with MDC1-AS <ref name="ref1" />. | ||
+ | |||
+ | Expression levels of MDC1-AS and MDC1 in tissues are significantly correlated in a positive direction, indicating a potential regulating role of MDC1-AS on the coding gene MDC1 <ref name="ref1" />. | ||
+ | |||
+ | The expression levels of MDC1-AS and MDC1 are decreased in bladder cancer cells <ref name="ref1" />. | ||
− | |||
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==Labs working on this lncRNA== | ==Labs working on this lncRNA== | ||
− | * Department of Environmental Genomics, Jiangsu Key Laboratory of Cancer Biomarkers, Prevention and Treatment, Cancer Center, Nanjing Medical University, Nanjing, China | + | * Department of Environmental Genomics, Jiangsu Key Laboratory of Cancer Biomarkers, Prevention and Treatment, Cancer |
+ | Center, Nanjing Medical University, Nanjing, China | ||
==References== | ==References== | ||
<references> | <references> | ||
− | <ref name="ref1"> | + | <ref name="ref1">Xue, Y., G. Ma, Z. Zhang, Q. Hua, H. Chu, N. Tong, L. Yuan, C. Qin, C. Yin, and M. Wang. "A Novel Antisense Long Noncoding Rna Regulates the Expression of Mdc1 in Bladder Cancer." Oncotarget 6, no. 1 (2015): 484-93.</ref> |
− | |||
</references> | </references> | ||
Latest revision as of 08:27, 19 September 2016
Contents
Annotated Information
Approved Symbol
MDC1-AS1
Approved Name
MDC1 antisense RNA 1
Synonyms
MDC1-AS
Chromosome
6p21.33
RefSeq ID
NR_133647
Ensembl ID
ENSG00000224328
pubmed IDs
25514464
Cellular Localization
MDC1-AS primarily exists in the nuclear fraction [1].
Function
MDC1-AS acts as a tumor suppressor in bladder cancer and exerts positive regulatory effect on its neighboring coding gene MDC1.[1]
MDC1-AS exhibits significant decreases in proliferation,colony formation, migration and invasion.[1]
Diseases
MDC1-AS may act as a tumor suppressor in bladder cancer [1].
Expression
MDC1-AS levels in cancerous tissues are evidently lower than those in the noncancerous tissues [1].
MDC1 is down-regulated in bladder cancer tissues, which was concordant with MDC1-AS [1].
Expression levels of MDC1-AS and MDC1 in tissues are significantly correlated in a positive direction, indicating a potential regulating role of MDC1-AS on the coding gene MDC1 [1].
The expression levels of MDC1-AS and MDC1 are decreased in bladder cancer cells [1].
Experiment | Primer | Forward primer | Reverse primer |
---|---|---|---|
RT-PCR | MDC1-AS | 5'-TCCCAGATGTGCCAAAGTCAG-3' | 5'-AGCAACCCCAGTTGTCATTC-3'[1] |
MDC1 | 5'-GCAGCTTCCAGACAACAG-3' | 5'-TACCCATGACTTTATCCACA-3'[1] | |
GAPDH | 5'-AAGGTGAAGGTCGGAGTCAAC-3' | 5'-GGGGTCATTGATGGCAACAATA-3' [1] | |
RNAi | siMDC1 | 5'-GCGGCUACAUAUCUUUAGUTT-3' | 5'-ACUAAAGAUAUGUAGCCGCTT-3'[1] |
Labs working on this lncRNA
- Department of Environmental Genomics, Jiangsu Key Laboratory of Cancer Biomarkers, Prevention and Treatment, Cancer
Center, Nanjing Medical University, Nanjing, China
References
Sequence
>gi|949474747|ref|NR_133647.1| Homo sapiens MDC1 antisense RNA 1 (MDC1-AS1), long non-coding RNA
000081 AGGGCACACA GGAACTTGAC TGTCCGGCGG ATGCGATCAG TGACCAGACA CCTGATGCTT CTTTATATGT ATAATGGCTG 000160
000161 ACCCTGGCGG GACTTCCTTC TCCACTTGTG TGTTGATGTC CACTGTGGTG GAGGCTTGGC TTCTCTCCAG GTGGATCCCA 000240
000241 GATGTGCCAA AGTCAGCGCT GCTGAGACTT CTTCCTCGTC ATCTGTATCG CTGTTGATAA CCATGGAAGC TTGGCTTTTC 000320
000321 TCCAGAGGGA CAGCCTGTGG GGCCTTGCCT TCTTCCACAT CTGTATCACT ACCAGCCTGG CTCTCCTGCA GATGGGCCAG 000400
000401 GCCTGGTGCT CCAGGACCCC TTGTACCTAC TCCATGGAAG ATCTTCCTCT TCTTCATAGG AATGACAACT GGGGTTGCTG 000480
000481 GGATCCTCTC TTCTTCCGCA TCAGTGTCGC TGTCGATGAA GCCAAAAGGC TGAGCCCTTT CCAAATGGAC CTCAGCTGGC 000560
000561 CTTCCAGGAG GCCTGCTGTC ATCATCCACA TCTGTGTCAC TGTCCTCTCC AGGAGGTTGG CTCCTCTCCA GAATCACCCC 000640
000641 AGCTGGAACC ACCCCATTCC CTGCACCCCT CTTGACTTTT GTATCATTGT CCCTCTCCTT CACTAAAGGC TGATCCTTTT 000720
000721 CAAGCTGGAT TTCAGTTA
Predicted Small Protein
Name | MDC1-AS1_smProtein_302:532 |
Length | 76 |
Molecular weight | 7927.2718 |
Aromaticity | 0.105263157895 |
Instability index | 48.4697368421 |
Isoelectric point | 10.3208618164 |
Runs | 14 |
Runs residual | 0.0428009679371 |
Runs probability | 0.0466033260151 |
Amino acid sequence | MEAWLFSRGTACGALPSSTSVSLPAWLSCRWARPGAPGPLVPTPWKIFLFFIGMTTGVAG ILSSSASVSLSMKPKG |
Secondary structure | LEEEEELLLEELLLLLLLLLLLLHHHHLLLLLLLLLLLLLLLLLLEEEEEEELLLLLHHH EEELLLEEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT TTiiiiiiiiiiiiii |