Difference between revisions of "TPT1-AS1"
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==Annotated Information== | ==Annotated Information== | ||
| − | === | + | ===Name=== |
| − | TPT1-AS1 | + | TPT1-AS1:TPT1 antisense RNA 1 |
| − | + | ===Function=== | |
| − | TPT1 antisense RNA 1 | + | [[File:TPT1-AS1 func.JPG|right|thumb|400px|'''ROC curve of the TPT1-AS1'''<ref name="ref1" />.]] |
| − | === | + | LncRNA TPT1-AS1 achieves the highest accuracy for predicting AG patients by time-dependent ROC curve analysis(AUC = 0.942), following the age (AUC = 0.810).<ref name="ref1" /> |
| − | + | ||
| − | === | + | ===Expression=== |
| − | + | TPT1-AS1 is higher expressed in low risk group of anaplastic gliomas patients.<ref name="ref1" /> | |
| − | === | + | ===Diseases=== |
| − | + | Anaplastic glioma<ref name="ref1" /> | |
| − | === | + | ===Sequence=== |
| − | + | >NR_024458.1 Homo sapiens TPT1 antisense RNA 1 (TPT1-AS1), long non-coding RNA | |
| − | === | + | <dnaseq>GAGGCGGAGACACAAGGCTCCGTTCCACTGGGCACGCCAGCGGTAGAGACAGGGTTTCACCATGTTGGCC |
| − | + | AGGCTGGTCTCAAACTCCTGAGCTCAGGCGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACGGG | |
| − | == | + | CGTGAGCCACTGCACCCGGTTCAAGCGATTCTCCTGCCTCAGCCCCCTGAGTAGCTGGGATTACAGGCAC |
| − | + | GCGCCACCACTCCCAGATCTTCACTTCAGGTCAGCTCCAAGGAGGCTATCCTTGCCCATCTTCCTAAAAT | |
| − | == | + | AGAGCTCTCAAAACCTGGCTGTTTTCCTTCAGAGCACTGGCCTCCAATTGCTCCGGTAGATTGCAAATGA |
| − | + | CCTGCTTTCTTTCTGTTCCCGGGCGTTTGGACCCCTGTCTTGGACCGCTGTCGGATAGTAAATCCCAAGT | |
| + | AAGGTACCTGCCGTCGGCAGATTTGAGCTTTCTTCTTGGACACCTAATACCCAGAGTCCTCCAGGCTCCG | ||
| + | GTAGATTGCAAATGACCTGCTTTCTTTCTGTTCCCGGGCGGCATCGGACCCGTCGGAGAGTAAATCCCAA | ||
| + | GTAAGGTACCTGCCGTTGGCAGATTTGAGCTTTCTTCTTGGACACCTAATACCCACAGTCCTCCAGGCTC | ||
| + | CGGTAGATTGCAAATGACCTGCTTTCTTTCTGTTCCCGGGTGGCATCGACCCGTCGGAGAGTAAATCCCA | ||
| + | AGTAAGGTACCTGCCGTTGGCAGATTTGAGCTTTCTTCTTGGACACCTAATACCCACAGTCCTCCAGTAA | ||
| + | ATCCCAAGCAAGGTACCTGCCGTCAGCAGATTTGAGCTTTCTTCTTGGACACCTAATACCCACAGTCCTC | ||
| + | CAGGCTCCGGTAGATTGCAAATGACCTGCTTTCTTTCTGTTCCCGGGCTGCGTTCGGACCCCTGTCGGAT | ||
| + | AGTAACTCCCAAGTAAGGTACCTGCCGTCGGCAGATTGGAGCTTTCTTCTTGGAGACCTAATACCCACAG | ||
| + | TCCTCCAGAAAAACAAACAAAGACATGGATTTACTGTGCATATTAGCAGATCCATACTGGAAAATGCATG | ||
| + | GAGGTTTCATATACACCACTTACAGTTTTCAGCTCCTCAGTAGTGACAAAGCCATACCCATCATTGTCGA | ||
| + | TTCGATCAACAATCTTCCCTAGCCTCTCCTTGCTCTCGTCCGGGGTGAGCTCGTCGAAGTTCTTGGAGTC | ||
| + | CTCCTTGCCCAGGAAGGCCTCGTGGTCGTACTGGAAGCTCTGGTTGTCCTCAGGGGGCCGCTCGCCCAGC | ||
| + | TCCGAGTCGGGCCGCACCACGCGCTCTTTGCGCACCGTGGGCTTGGCCCGCAGAACCCGCGGCGCCAGCA | ||
| + | CCAGCGCCAGCAGCAGCCCCAGGGCTAACCCCAGGCGGCCACCGCGCGCCATCGTCCCGAGGAGAGGGCG | ||
| + | GCCGGGAGGGAGACGCTGAGCGAGCGACAACAGCGGCAGCTCGGGAATGGGGGCTCGGAGCGCGGCGGCC | ||
| + | AAGTTTTATGTTATGTATATTTTACAAGTAAAAAAATTTTTTCACCTCAGCCTGAAAAAAAAAAAAAAAA | ||
| + | AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | ||
| + | </dnaseq> | ||
| + | |||
| + | ==Labs working on this lncRNA== | ||
| + | *Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China. | ||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1"> | ||
| + | Wang W, Yang F, Zhang L, Chen J, Zhao Z, Wang H, Wu F, Liang T, Yan X, Li J, | ||
| + | Lan Q, Wang J, Zhao J. LncRNA profile study reveals four-lncRNA signature | ||
| + | associated with the prognosis of patients with anaplastic gliomas. Oncotarget. | ||
| + | 2016 Nov 22;7(47):77225-77236. | ||
| + | </ref> | ||
| + | </references> | ||
Latest revision as of 12:24, 23 November 2017
Contents
Annotated Information
Name
TPT1-AS1:TPT1 antisense RNA 1
Function
ROC curve of the TPT1-AS1[1].
LncRNA TPT1-AS1 achieves the highest accuracy for predicting AG patients by time-dependent ROC curve analysis(AUC = 0.942), following the age (AUC = 0.810).[1]
Expression
TPT1-AS1 is higher expressed in low risk group of anaplastic gliomas patients.[1]
Diseases
Anaplastic glioma[1]
Sequence
>NR_024458.1 Homo sapiens TPT1 antisense RNA 1 (TPT1-AS1), long non-coding RNA
000001 GAGGCGGAGA CACAAGGCTC CGTTCCACTG GGCACGCCAG CGGTAGAGAC AGGGTTTCAC CATGTTGGCC AGGCTGGTCT 000080
000081 CAAACTCCTG AGCTCAGGCG ATCTGCCCGC CTCGGCCTCC CAAAGTGCTG GGATTACGGG CGTGAGCCAC TGCACCCGGT 000160
000161 TCAAGCGATT CTCCTGCCTC AGCCCCCTGA GTAGCTGGGA TTACAGGCAC GCGCCACCAC TCCCAGATCT TCACTTCAGG 000240
000241 TCAGCTCCAA GGAGGCTATC CTTGCCCATC TTCCTAAAAT AGAGCTCTCA AAACCTGGCT GTTTTCCTTC AGAGCACTGG 000320
000321 CCTCCAATTG CTCCGGTAGA TTGCAAATGA CCTGCTTTCT TTCTGTTCCC GGGCGTTTGG ACCCCTGTCT TGGACCGCTG 000400
000401 TCGGATAGTA AATCCCAAGT AAGGTACCTG CCGTCGGCAG ATTTGAGCTT TCTTCTTGGA CACCTAATAC CCAGAGTCCT 000480
000481 CCAGGCTCCG GTAGATTGCA AATGACCTGC TTTCTTTCTG TTCCCGGGCG GCATCGGACC CGTCGGAGAG TAAATCCCAA 000560
000561 GTAAGGTACC TGCCGTTGGC AGATTTGAGC TTTCTTCTTG GACACCTAAT ACCCACAGTC CTCCAGGCTC CGGTAGATTG 000640
000641 CAAATGACCT GCTTTCTTTC TGTTCCCGGG TGGCATCGAC CCGTCGGAGA GTAAATCCCA AGTAAGGTAC CTGCCGTTGG 000720
000721 CAGATTTGAG CTTTCTTCTT GGACACCTAA TACCCACAGT CCTCCAGTAA ATCCCAAGCA AGGTACCTGC CGTCAGCAGA 000800
000801 TTTGAGCTTT CTTCTTGGAC ACCTAATACC CACAGTCCTC CAGGCTCCGG TAGATTGCAA ATGACCTGCT TTCTTTCTGT 000880
000881 TCCCGGGCTG CGTTCGGACC CCTGTCGGAT AGTAACTCCC AAGTAAGGTA CCTGCCGTCG GCAGATTGGA GCTTTCTTCT 000960
000961 TGGAGACCTA ATACCCACAG TCCTCCAGAA AAACAAACAA AGACATGGAT TTACTGTGCA TATTAGCAGA TCCATACTGG 001040
001041 AAAATGCATG GAGGTTTCAT ATACACCACT TACAGTTTTC AGCTCCTCAG TAGTGACAAA GCCATACCCA TCATTGTCGA 001120
001121 TTCGATCAAC AATCTTCCCT AGCCTCTCCT TGCTCTCGTC CGGGGTGAGC TCGTCGAAGT TCTTGGAGTC CTCCTTGCCC 001200
001201 AGGAAGGCCT CGTGGTCGTA CTGGAAGCTC TGGTTGTCCT CAGGGGGCCG CTCGCCCAGC TCCGAGTCGG GCCGCACCAC 001280
001281 GCGCTCTTTG CGCACCGTGG GCTTGGCCCG CAGAACCCGC GGCGCCAGCA CCAGCGCCAG CAGCAGCCCC AGGGCTAACC 001360
001361 CCAGGCGGCC ACCGCGCGCC ATCGTCCCGA GGAGAGGGCG GCCGGGAGGG AGACGCTGAG CGAGCGACAA CAGCGGCAGC 001440
001441 TCGGGAATGG GGGCTCGGAG CGCGGCGGCC AAGTTTTATG TTATGTATAT TTTACAAGTA AAAAAATTTT TTCACCTCAG 001520
001521 CCTGAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA A
000081 CAAACTCCTG AGCTCAGGCG ATCTGCCCGC CTCGGCCTCC CAAAGTGCTG GGATTACGGG CGTGAGCCAC TGCACCCGGT 000160
000161 TCAAGCGATT CTCCTGCCTC AGCCCCCTGA GTAGCTGGGA TTACAGGCAC GCGCCACCAC TCCCAGATCT TCACTTCAGG 000240
000241 TCAGCTCCAA GGAGGCTATC CTTGCCCATC TTCCTAAAAT AGAGCTCTCA AAACCTGGCT GTTTTCCTTC AGAGCACTGG 000320
000321 CCTCCAATTG CTCCGGTAGA TTGCAAATGA CCTGCTTTCT TTCTGTTCCC GGGCGTTTGG ACCCCTGTCT TGGACCGCTG 000400
000401 TCGGATAGTA AATCCCAAGT AAGGTACCTG CCGTCGGCAG ATTTGAGCTT TCTTCTTGGA CACCTAATAC CCAGAGTCCT 000480
000481 CCAGGCTCCG GTAGATTGCA AATGACCTGC TTTCTTTCTG TTCCCGGGCG GCATCGGACC CGTCGGAGAG TAAATCCCAA 000560
000561 GTAAGGTACC TGCCGTTGGC AGATTTGAGC TTTCTTCTTG GACACCTAAT ACCCACAGTC CTCCAGGCTC CGGTAGATTG 000640
000641 CAAATGACCT GCTTTCTTTC TGTTCCCGGG TGGCATCGAC CCGTCGGAGA GTAAATCCCA AGTAAGGTAC CTGCCGTTGG 000720
000721 CAGATTTGAG CTTTCTTCTT GGACACCTAA TACCCACAGT CCTCCAGTAA ATCCCAAGCA AGGTACCTGC CGTCAGCAGA 000800
000801 TTTGAGCTTT CTTCTTGGAC ACCTAATACC CACAGTCCTC CAGGCTCCGG TAGATTGCAA ATGACCTGCT TTCTTTCTGT 000880
000881 TCCCGGGCTG CGTTCGGACC CCTGTCGGAT AGTAACTCCC AAGTAAGGTA CCTGCCGTCG GCAGATTGGA GCTTTCTTCT 000960
000961 TGGAGACCTA ATACCCACAG TCCTCCAGAA AAACAAACAA AGACATGGAT TTACTGTGCA TATTAGCAGA TCCATACTGG 001040
001041 AAAATGCATG GAGGTTTCAT ATACACCACT TACAGTTTTC AGCTCCTCAG TAGTGACAAA GCCATACCCA TCATTGTCGA 001120
001121 TTCGATCAAC AATCTTCCCT AGCCTCTCCT TGCTCTCGTC CGGGGTGAGC TCGTCGAAGT TCTTGGAGTC CTCCTTGCCC 001200
001201 AGGAAGGCCT CGTGGTCGTA CTGGAAGCTC TGGTTGTCCT CAGGGGGCCG CTCGCCCAGC TCCGAGTCGG GCCGCACCAC 001280
001281 GCGCTCTTTG CGCACCGTGG GCTTGGCCCG CAGAACCCGC GGCGCCAGCA CCAGCGCCAG CAGCAGCCCC AGGGCTAACC 001360
001361 CCAGGCGGCC ACCGCGCGCC ATCGTCCCGA GGAGAGGGCG GCCGGGAGGG AGACGCTGAG CGAGCGACAA CAGCGGCAGC 001440
001441 TCGGGAATGG GGGCTCGGAG CGCGGCGGCC AAGTTTTATG TTATGTATAT TTTACAAGTA AAAAAATTTT TTCACCTCAG 001520
001521 CCTGAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA A
Labs working on this lncRNA
- Department of Neurosurgery, Beijing Tiantan Hospital, Capital Medical University, Beijing, China.
