Difference between revisions of "NONHSAT091315"
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===Characteristics=== | ===Characteristics=== | ||
| − | ''TUSC7'' is four exon transcript of 2105 bp long noncoding RNA, located on the focal region of human chromosome chr3q13.31 (osteo3q13.31) <ref name="ref1" />. | + | ''TUSC7'' is four exon transcript of 2105 bp long noncoding RNA, located on the focal region of human chromosome chr3q13.31 (osteo3q13.31) <ref name="ref1" />. Exon 4 harbors two miR-211 binding sites <ref name="ref4" />. |
===Features=== | ===Features=== | ||
| Line 53: | Line 53: | ||
<ref name="ref3"> Xu J, Zhao J, Zhang R. The novel long noncoding RNA TUSC7 inhibits proliferation by sponging MiR-211 in colorectal cancer[J]. Cellular physiology and biochemistry. 2017, 41(2):635-644. | <ref name="ref3"> Xu J, Zhao J, Zhang R. The novel long noncoding RNA TUSC7 inhibits proliferation by sponging MiR-211 in colorectal cancer[J]. Cellular physiology and biochemistry. 2017, 41(2):635-644. | ||
</ref>(3) | </ref>(3) | ||
| + | <ref name="ref4"> Liu Q, Huang J, Zhou N, Zhang Z, Zhang A, Lu Z et al. LncRNA loc285194 is a p53-regulated tumor suppressor[J]. Nucleic acids research. 2013, 41(9): 4976-4987. | ||
| + | </ref>(4) | ||
</references> | </references> | ||
Revision as of 08:35, 22 November 2018
Please input one-sentence summary here.
Contents
Annotated Information
Name
TUSC7: Tumor suppressor candidate 7 (HGNC nomenclature), LOC285194 [1].
Characteristics
TUSC7 is four exon transcript of 2105 bp long noncoding RNA, located on the focal region of human chromosome chr3q13.31 (osteo3q13.31) [1]. Exon 4 harbors two miR-211 binding sites [2].
Features
Recurrent focal copy-number changes and loss of heterozygosity (LOH), which usually involves loss of TUSC7 and BC040587 expression, implicate these ncRNAs in ostecosarcoma. Focal osteo3q13.31 CNAs and LOH are also common in cell lines from several other cancers (such as lung, autonomic and central nervous system, blood, endometrium, soft tissue, skin, gastrointestinal tract, urinary tract, and breast).
Function
Together with the other noncoding RNA BC040587 and the tumor suppressor gene LSAMP (limbic system-associated membrane protein) present in focal region (osteo3q13.31), TUSC7 cooperatively acting as tumor suppressor genes [1].
Depletion of TUSC7 by siRNA promoted proliferation of normal osteoblasts (with a mild increase in the G1 population) by cell-cycle transcripts (Cyclin D1, VEGF, and VEGFR1 up-regulation, and cyclin A2 and cyclin B1 suppression) as well as regulation of apoptotic genes (such as suppression of BCL2 and BimEL pro-apoptotic genes) [1].
Expression
TUSC7 is significantly downregulated in Colorectal cancer tissues [3][4].
| Experiment | Forward primer | Reverse primer |
|---|---|---|
| qRT-PCR | 5’-GGAAACAGAAGGCACCTCA-3’ | 5’-TCTCAGAGGTCAAACAGGCA-3’[4] |
Regulation
Please input regulation information here.
Disease
Labs working on this lncRNA
- Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, 200032, China.[3]
- Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China.[3]
- Institute of Pathology, Fudan University, Shanghai, 200032, China.[3]
- Institutes of Biomedical Sciences, Fudan University, Shanghai, 200032, China.[3]
- Department of Colorectal Surgery, Cancer Hospital of China Medical University, Liaoning Cancer Hospital & Institute, Shenyang, China.[4]
References
- ↑ 1.0 1.1 1.2 1.3 1.4 Pasic I, Shlien A, Durbin AD, Stavropoulos DJ, Baskin B, Ray PN et al. Recurrent focal copy-number changes and loss of heterozygosity implicate two noncoding RNAs and one tumor suppressor gene at chromosome 3q13. 31 in osteosarcoma[J]. Cancer research. 2010, 70(1): 160-171.
- ↑ Liu Q, Huang J, Zhou N, Zhang Z, Zhang A, Lu Z et al. LncRNA loc285194 is a p53-regulated tumor suppressor[J]. Nucleic acids research. 2013, 41(9): 4976-4987.
- ↑ 3.0 3.1 3.2 3.3 3.4 3.5 Qi P, Xu MD, Ni SJ, Huang D, Wei P, Tan C et al. Low expression of LOC285194 is associated with poor prognosis in colorectal cancer[J]. Journal of translational medicine. 2013, 11(1):122.
- ↑ 4.0 4.1 4.2 4.3 Xu J, Zhao J, Zhang R. The novel long noncoding RNA TUSC7 inhibits proliferation by sponging MiR-211 in colorectal cancer[J]. Cellular physiology and biochemistry. 2017, 41(2):635-644.
Sequence
>gi|285194|ref|NR_015391.1| Homo sapiens tumor suppressor candidate 7 (TUSC7), long non-coding RNA
000081 TTGCTAGAGG TAGGAAGATG ATAAGATCAG TTTCTATAGG TAGAGGATAA TGTGTCCTAA AATGTAGGTA GAGATAAGTC 000160
000161 TGACAGTGGT TTAGACAAAA AGGGCCTCTG CTAATGGTGG AGAGATCAAG GAAGAAAAGA GCAACGTTAA AGTGAGGCTG 000240
000241 TACCCACAGA TCATGCTCAA GCAAATTCGA ACCGTGAGCG CATTTCTCTT AAACAATGAA CACTTAGAAT AAAAATTAAA 000320
000321 ATTTCCCACA AATTTCTAAT TTTAAAATAG TTTCCCAAGA TTTCAGTGGT ATTGTATATA TGCCCATATA ATTTTTTGGA 000400
000401 TTACTATTCC CACAAGTGTA AGATGAAAGA GGACCTGCCC TCCATTCTAT CTACTCCCTC TCTGCAAAGG CCATTTTGAA 000480
000481 GATCTCAGTT TTACTGAAAG GGGTCTGCCA CACATAACTT CCCTGGTGTA CCAGCAACAA GTGTTCAGTG GACCATGGCA 000560
000561 ACACAAAGAA TGACGGAGGA GAGAAAATGC CATGCAGAAG TGATAGTCAA GATGAAGATG TGGGAGAGGA GCAGCCCCCA 000640
000641 GTATATATTC AGTGTGTCCT CTGAAGTAAC AACCATCCCA TCTGGCTGAG AAGTGATGGA CACGGCTCCT TAACCACACT 000720
000721 GTACCCTCTG TTCTTGGCAC CTCTCTACCA GAAAGATATC AACAAATTGG ATGGAATTCA GAGAACAGTA AGAAAAATGA 000800
000801 TTAAAGAGAT GGAGGCAGTG ACTTATGAGG AAAGATGAAA AGGACTAAAT CTATGTAGCT TGGCAAAGCA ACAACTGAGG 000880
000881 TGGCGTATGA AAACTGTCTA CAAGCATTTG AAGAATATAA ACACCAAGGG AAGAGAGGGA ACTTTTTAGA ATGGTCTGGG 000960
000961 GAATAAGCAG AGTAAGAGGA CAGAATTGAA GAAAGGAGAG AGATATGCTA AGTTGGGGGT GGGGGCGTTT TCTCATCAAT 001040
001041 TGTAAATTTT GATAAATAAC AAAATTAAGT CTGGAGAGAA AGAGTTGCAT CTCATGCTTT TAGGTTACAA TCAGTGTTGA 001120
001121 CCTGCACTGA GAAAATGTGA CTTCCTATTA TCCTTCTCAA AGTTATTGCT GCAGAGGAAA GAAGCATACA TCTTTTACCC 001200
001201 ACCAGGAAAC CCCCAAAGCA TCTATTACCA TAATAGCCAT GGGAAACAGA AGGCACCTCA AATAAAGGTG GGGAAAAGAA 001280
001281 TGAAAGAAAT GGCTTTGGCC TGTGCCTGTT TGACCTCTGA GAGATACTTT TTGCAAGAAA TTGTTAAGTT TTGGCCCAAA 001360
001361 AAGTGGTCGG TCTTTTATCC TTCCTTGTGG AGGCCAAACT GCAAACCAGG ATGAAGAAAC CATCAGTGGC AGTTTGGGGA 001440
001441 GGTGGAGGAG GGACTATCTA GACTCAGTGA ATCACCAAGG AAACATGAGG CCTATTTCTC TGTGAAGCTG AACTTCAAAA 001520
001521 AACAATCTAA GAGATACAAA GGGAAAAGTG TGACTGCTCT GACAGCAAAA ACAAGCAAAT ATCTCCAGAG GGGATTAATC 001600
001601 CTTCTGCTTC AAAGTAACTA AAACAAAGAA AGCTGAGCCA GCTTCACTGG AAACAACACC TGTCCATCAG ACAAGGATGA 001680
001681 GCTAATCAAA AGAAAACACT GCCTATGTGC ACGACTCAGC AGCCTGGACA GCTAATACCA AGGAACACGT TTTCACTATA 001760
001761 AAGATTCAGC TTTCAAAATC CAGTTCCCTC TTGTAGAGCC ACAGGGTTAA AAGGGACCTT AGAGATCATC TACATACAGG 001840
001841 CCAAACCCTC AATGAATGCC AGTGTTCGCC TTATGTTCTT CTTGCCGGAC TCTTTTCTGG CCTCTGTTCT GTCAGGATGT 001920
001921 TTCCTGTTTT GCAAAACAGC TTTAATCCTT GAGTATATTT AATTGTTAGA AAACAGTTCC TCAAATTTGA CCCCAAATTT 002000
002001 AAGTCTAATT TATGAAGAAA GTTTTGCCTT TGGAGACAGG TTTAATTTTA CTTCCATGTG GAAAACCTTC AAATAAAATG 002080
002081 ATGACTATTG TGTACTCACG AAAAA
Predicted Small Protein
| Name | NONHSAT091315_smProtein_554:688 |
| Length | 45 |
| Molecular weight | 5090.8545 |
| Aromaticity | 0.0681818181818 |
| Instability index | 79.2 |
| Isoelectric point | 7.94122314453 |
| Runs | 9 |
| Runs residual | 0.0414438502674 |
| Runs probability | 0.0412569432178 |
| Amino acid sequence | MATQRMTEERKCHAEVIVKMKMWERSSPQYIFSVSSEVTTIPSG |
| Secondary structure | LLLLLLLHHHLEEEEEEEEEEEEEELLLEEEEEELLEEEEELLL |
| PRMN | - |
| PiMo | - |
