Difference between revisions of "CDRT3"

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(Created page with "==Annotated Information== ===Name=== Approved symbol: CDRT3 Approved name: CMT1A duplicated region transcript 3 HGNC ID: HGNC:14382 RefSeq ID: NR_146601 ===Characteristics...")
 
(Characteristics)
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===Characteristics ===
 
===Characteristics ===
[[File:Schematic representation of the LeXis gene locus on Integrative Genome Viewer (IGV) showing histone marks from LICR ENCODE data.jpg|right|thumb|Schematic representation of the LeXis gene locus([https://www.ncbi.nlm.nih.gov/pubmed/27251289 (Sallam T 2016)])]]
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Please input evolution information here.
 
 
LeXis, named as "Liver-expressed LXR-induced sequence", it's gene locus Lie in close proximity to the canonical LXR target gene Abca1 in mouse([https://www.ncbi.nlm.nih.gov/pubmed/27251289 (Sallam T 2016)]), was distinct gene with Abca1, almost exclusively located in the insoluble nuclear pellet in fractionation studies, along with the known nuclear lncRNAs XIST and histone H3.
 
  
 
===Expression===
 
===Expression===

Revision as of 03:12, 28 July 2019

Annotated Information

Name

Approved symbol: CDRT3

Approved name: CMT1A duplicated region transcript 3

HGNC ID: HGNC:14382

RefSeq ID: NR_146601

Characteristics

Please input evolution information here.

Expression

The highly expressed in primary mouse hepatocytes treated with GW3965((Sallam T 2016)) and upregulated in OS(Osteosarcoma) tissues((Wang G 2017)).

Regulation

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Function

LeXis functions as a ceRNA of β-catenin((Wang G 2017))

LeXis binds with heterogeneous ribonucleoprotein Raly which contains both an RNA-binding domain and a leucine-zipper coiled domain, to affect the expression of srebf2 gene, resulting to the change of the level of SREBP-2(sterol regulatory element-binding protein), to modulate cholesterol metabolism((Sallam T 2016)).

LeXis positively regulates CTNNB1 expression by functioning as a ceRNA against miR-199a to promote osteosarcoma growth((Wang G 2017)).

Disease

  • osteosarcoma
  • colon adenocarcinoma [1]

Evolution

Please input evolution information here.

Labs working on this lncRNA

  • No.4 Department of Orthopedics, Cangzhou Central HospitalCangzhou, Hebei Province, China
  • Department of Pathology and Laboratory Medicine, Howard Hughes Medical Institute, University of California, Los Angeles, California 90095, USA.

References

  1. Shahriyari L. Effect of normalization methods on the performance of supervised learning algorithms applied to HTSeq-FPKM-UQ data sets: 7SK RNA expression as a predictor of survival in patients with colon adenocarcinoma. Brief Bioinform. 2017 Nov 3. doi: 10.1093/bib/bbx153.

Annotation originally sourced from lncRNAdb.