Difference between revisions of "LINC01684"
Jiabao Cao (talk | contribs) |
|||
| (One intermediate revision by one other user not shown) | |||
| Line 1: | Line 1: | ||
| − | |||
==Annotated Information== | ==Annotated Information== | ||
===Name=== | ===Name=== | ||
| − | LINC01684:long intergenic non-protein coding RNA 1684 | + | Approved symbol: LINC01684 |
| + | |||
| + | Approved name: long intergenic non-protein coding RNA 1684 | ||
| + | |||
| + | HGNC ID: HGNC:52472 | ||
| − | lnc-JAM2-6<ref name="ref1" /> | + | Alias symbols: lnc-JAM2-6<ref name="ref1" /> |
| + | |||
| + | RefSeq ID: NR_135519 | ||
| + | |||
| + | LncBook ID: [https://bigd.big.ac.cn/lncbook/transcript?transid=HSALNT0289124 HSALNT0289124] | ||
===Function=== | ===Function=== | ||
| − | rs2829145 A/G | + | The genome variant rs2829145 A/G, which is associated with nonalcoholic fatty liver disease (NAFLD) and related histological outcomes, is located in lncRNA lnc-JAM2-6 <ref name="ref1" />. In addition, lnc-JAM2-6 showes potential sequence-specific binding motifs of oncogenes MAFK and JUND, and the transcription factor CEBPB that is involved in inflammatory response <ref name="ref1" />. |
| − | === | + | |
| − | Nonalcoholic fatty liver disease<ref name="ref1" /> | + | ===Disease=== |
| + | Nonalcoholic fatty liver disease <ref name="ref1" /> | ||
| + | |||
===Sequence=== | ===Sequence=== | ||
>NR_135519.1 Homo sapiens long intergenic non-protein coding RNA 1684 (LINC01684), transcript variant 1, long non-coding RNA | >NR_135519.1 Homo sapiens long intergenic non-protein coding RNA 1684 (LINC01684), transcript variant 1, long non-coding RNA | ||
Latest revision as of 03:50, 12 August 2019
Contents
Annotated Information
Name
Approved symbol: LINC01684
Approved name: long intergenic non-protein coding RNA 1684
HGNC ID: HGNC:52472
Alias symbols: lnc-JAM2-6[1]
RefSeq ID: NR_135519
LncBook ID: HSALNT0289124
Function
The genome variant rs2829145 A/G, which is associated with nonalcoholic fatty liver disease (NAFLD) and related histological outcomes, is located in lncRNA lnc-JAM2-6 [1]. In addition, lnc-JAM2-6 showes potential sequence-specific binding motifs of oncogenes MAFK and JUND, and the transcription factor CEBPB that is involved in inflammatory response [1].
Disease
Nonalcoholic fatty liver disease [1]
Sequence
>NR_135519.1 Homo sapiens long intergenic non-protein coding RNA 1684 (LINC01684), transcript variant 1, long non-coding RNA
000001 AAGTGACTGT AGGTTTAGAT GAATGGAAAA TGAACTTGCC AGTTCACAGC TATGTCCTTC CCAATTTAGG AGGTTAAGGG 000080
000081 CAGGAAAAAC ATGAGAAACT CTTTTGAGAA GCTGCACAAG CTGACATGGA GGATCAAGGA TTTCAAAAGC TTTGAATATA 000160
000161 AAGAGGTCTA CCTTAAATCA GTAAGGTCTG TGGCTGTCCA GATGCACATC ATAATCGGCA CAGAACTCTA CCATTTGGTC 000240
000241 AAAACCAAAA ACTAACTGGG ACGCCTAAGA CTGTAACAGA CCCCTGGAGA CTTCCCACTG GACTCCCCTG AGGCAGATAT 000320
000321 TTTGCAAAAG AAAACTTCCC GCCATGAGAT CTTTTCCCAC ATTCCCTCTT GGCAACTTAA CCAGAAGATA AGGTTAAGTT 000400
000401 CATTTCCACG GCCTTTAGAA CCTCTGGACC TTATACATGA GAAAAGACAT CATTCATGGT TGGAGTCACT GGACCTGGTT 000480
000481 AATATGTACC AAAAGGAAAC AGAAAAAGCA GTTCTGGTGG CTACATCTTG CAAGTACTAG ACCAGAATAT AAAGCTGGAT 000560
000561 GAGAGAGACT TTGATGATAT GAAGTACTAG GGTTTAAAGG GAACACCGAA CTCAGTGGAT TGCAAGAGCA TCTGACATCA 000640
000641 GCCCTACTGT GCTTTAGGCA TGGCTCTTGG AAATATGACA GACCACAGTA CATAGTGTGA AGTTTCTAGA CCTGCCCTGA 000720
000721 TACAGTGTTG TGGAACCAAT ATAAAGACTG AGTCACTGGA CAAGCTAGAG TGACTGTGTA CTTCAGGATT AACAAAAACA 000800
000801 TTAGTTTCAC TAAGTTTATA AAGATTGAAA TTTTTACAGG CTTAACAGTG GCTGTTGTCT ATAGGCCAAG AAGGATTAGC 000880
000881 AAGTAATGCT CTTATGAAAC AAATGTTGAA GATGATATAC AATTCTAGAA GAGCAAAGGA AAGGTGGTAG CATGTAATCA 000960
000961 GTACAGAGAG ATAAGGACCA ACATAATTTC CATGCCAGTT ATCAGCAACT CAACAGCTGA GGAACTCTAT TATGTAGGAA 001040
001041 TCTAAGATCA TGGATGAGCT ATCATCACAG TTTTTAGGGG AACTATAGAA AGGCTTCCAA TAAGGATTTT TGTACATGTA 001120
001121 CATATATATT CAGAAAGCAG CTAATGTGGA GAAGCAGAAG GTCGATGTCA GCCACTCCAG TGGAAATTTC AATCACTCAT 001200
001201 CTACTTTCCA AGCTTGAGCC AACTTTCAGA CTGAGAGTCC AATAATTAAA GCAGAAGCTC TGTTTTTCTG AGAAATGACC 001280
001281 TGATGGCAGA GCAAATATAT ACTGTAAAGA TAATTCTCTT CCTCTACTCA AAGTGTCTGT AGCCGCAGGT ACATATGGAA 001360
001361 AAGGGAGCAC CCACATTTTT TGATATAGTG TGTGAATTGA AGGAAAGTCA ACTTTTACCA TAGCCTCCCT TCAAGAGTGG 001440
001441 GTACATATGA AAATCAGGTA ATAAATTTAG TTTAACCACG AATTCATTTC ACAATGGGTC CAATGAGTCC ATATATGCAC 001520
001521 AATAAAACTT TATTTCCTGA ATTCATAATT TAGATATACA TACATAGTAA CTGGCAGAAC ACTCACTCTA GTTCCTTGAA 001600
001601 ATGTGAATGA ATAATAATTG TCATAGGAAA GGTCAAGGAA AAGACTGAAA AATGTCTTTA TACCACAGCC AAGAGACTTC 001680
001681 ATAAAGCAAT ATTGCCTTCC AGATACAATA GAAGAGATCA GTGCCATTTT TAAAAACCTA AAAAGTTGCA GAGGCAGTTT 001760
001761 CTACTGTATT CTCATTTCAG TCACTTGTGT GGCCACACAA AAATCAAATA CATGATGGCA GATTGCAGTG AACTCTAGGA 001840
001841 CACATACCCA AATGGTAGAC ATACAAAGCT GTTCTGACAA GTGTGATATT ACTGGAATGG GTAGACTTGG GTATGTGATA 001920
001921 CGTGTTAATT CTTATTTTTA GTTGCAGAAT TATAATTAGA CACTTTTTTA TAAATTTAAG ATTTTGGTTA AAAATAATAT 002000
002001 ATTTGCTTAA ACATAAAACA CAGTATGTAT TTTTTTAT
000081 CAGGAAAAAC ATGAGAAACT CTTTTGAGAA GCTGCACAAG CTGACATGGA GGATCAAGGA TTTCAAAAGC TTTGAATATA 000160
000161 AAGAGGTCTA CCTTAAATCA GTAAGGTCTG TGGCTGTCCA GATGCACATC ATAATCGGCA CAGAACTCTA CCATTTGGTC 000240
000241 AAAACCAAAA ACTAACTGGG ACGCCTAAGA CTGTAACAGA CCCCTGGAGA CTTCCCACTG GACTCCCCTG AGGCAGATAT 000320
000321 TTTGCAAAAG AAAACTTCCC GCCATGAGAT CTTTTCCCAC ATTCCCTCTT GGCAACTTAA CCAGAAGATA AGGTTAAGTT 000400
000401 CATTTCCACG GCCTTTAGAA CCTCTGGACC TTATACATGA GAAAAGACAT CATTCATGGT TGGAGTCACT GGACCTGGTT 000480
000481 AATATGTACC AAAAGGAAAC AGAAAAAGCA GTTCTGGTGG CTACATCTTG CAAGTACTAG ACCAGAATAT AAAGCTGGAT 000560
000561 GAGAGAGACT TTGATGATAT GAAGTACTAG GGTTTAAAGG GAACACCGAA CTCAGTGGAT TGCAAGAGCA TCTGACATCA 000640
000641 GCCCTACTGT GCTTTAGGCA TGGCTCTTGG AAATATGACA GACCACAGTA CATAGTGTGA AGTTTCTAGA CCTGCCCTGA 000720
000721 TACAGTGTTG TGGAACCAAT ATAAAGACTG AGTCACTGGA CAAGCTAGAG TGACTGTGTA CTTCAGGATT AACAAAAACA 000800
000801 TTAGTTTCAC TAAGTTTATA AAGATTGAAA TTTTTACAGG CTTAACAGTG GCTGTTGTCT ATAGGCCAAG AAGGATTAGC 000880
000881 AAGTAATGCT CTTATGAAAC AAATGTTGAA GATGATATAC AATTCTAGAA GAGCAAAGGA AAGGTGGTAG CATGTAATCA 000960
000961 GTACAGAGAG ATAAGGACCA ACATAATTTC CATGCCAGTT ATCAGCAACT CAACAGCTGA GGAACTCTAT TATGTAGGAA 001040
001041 TCTAAGATCA TGGATGAGCT ATCATCACAG TTTTTAGGGG AACTATAGAA AGGCTTCCAA TAAGGATTTT TGTACATGTA 001120
001121 CATATATATT CAGAAAGCAG CTAATGTGGA GAAGCAGAAG GTCGATGTCA GCCACTCCAG TGGAAATTTC AATCACTCAT 001200
001201 CTACTTTCCA AGCTTGAGCC AACTTTCAGA CTGAGAGTCC AATAATTAAA GCAGAAGCTC TGTTTTTCTG AGAAATGACC 001280
001281 TGATGGCAGA GCAAATATAT ACTGTAAAGA TAATTCTCTT CCTCTACTCA AAGTGTCTGT AGCCGCAGGT ACATATGGAA 001360
001361 AAGGGAGCAC CCACATTTTT TGATATAGTG TGTGAATTGA AGGAAAGTCA ACTTTTACCA TAGCCTCCCT TCAAGAGTGG 001440
001441 GTACATATGA AAATCAGGTA ATAAATTTAG TTTAACCACG AATTCATTTC ACAATGGGTC CAATGAGTCC ATATATGCAC 001520
001521 AATAAAACTT TATTTCCTGA ATTCATAATT TAGATATACA TACATAGTAA CTGGCAGAAC ACTCACTCTA GTTCCTTGAA 001600
001601 ATGTGAATGA ATAATAATTG TCATAGGAAA GGTCAAGGAA AAGACTGAAA AATGTCTTTA TACCACAGCC AAGAGACTTC 001680
001681 ATAAAGCAAT ATTGCCTTCC AGATACAATA GAAGAGATCA GTGCCATTTT TAAAAACCTA AAAAGTTGCA GAGGCAGTTT 001760
001761 CTACTGTATT CTCATTTCAG TCACTTGTGT GGCCACACAA AAATCAAATA CATGATGGCA GATTGCAGTG AACTCTAGGA 001840
001841 CACATACCCA AATGGTAGAC ATACAAAGCT GTTCTGACAA GTGTGATATT ACTGGAATGG GTAGACTTGG GTATGTGATA 001920
001921 CGTGTTAATT CTTATTTTTA GTTGCAGAAT TATAATTAGA CACTTTTTTA TAAATTTAAG ATTTTGGTTA AAAATAATAT 002000
002001 ATTTGCTTAA ACATAAAACA CAGTATGTAT TTTTTTAT