Difference between revisions of "LINC00632"
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===Chromosome=== | ===Chromosome=== | ||
Xq27.1 | Xq27.1 | ||
| + | |||
| + | ===Characteristics === | ||
| + | Please input characteristics information here. | ||
| + | |||
| + | ===Expression=== | ||
| + | Please input expression information here. | ||
| + | |||
| + | ===Regulation=== | ||
| + | Please input regulation information here. | ||
| + | |||
| + | ===Function=== | ||
| + | LINC00632 were responsible for driving ciRS-7 expression <ref name="ref1" />. | ||
| + | |||
| + | ===Disease=== | ||
| + | Please input disease information here. | ||
| + | |||
| + | ===Evolution=== | ||
| + | Please input evolution information here. | ||
| + | |||
| + | ==Labs working on this lncRNA== | ||
| + | * Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, United States of America. | ||
| + | * Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA, United States of America. | ||
| + | * Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, United States of America. | ||
| + | * Department of Biomedical Data Science, Stanford University School of Medicine, Stanford, CA, United States of America. | ||
| + | |||
| + | ==References== | ||
| + | <references> | ||
| + | <ref name="ref1"> Shahriyari L. Effect of normalization methods on the performance of supervised | ||
| + | learning algorithms applied to HTSeq-FPKM-UQ data sets: 7SK RNA expression as a | ||
| + | predictor of survival in patients with colon adenocarcinoma. Brief Bioinform. | ||
| + | 2017 Nov 3. doi: 10.1093/bib/bbx153. | ||
| + | </ref>(1) | ||
| + | </references> | ||
===Sequence=== | ===Sequence=== | ||
>gi|256222613|ref|NR_028344.1| Homo sapiens long intergenic non-protein coding RNA 632 (LINC00632), transcript variant 1, long non-coding RNA | >gi|256222613|ref|NR_028344.1| Homo sapiens long intergenic non-protein coding RNA 632 (LINC00632), transcript variant 1, long non-coding RNA | ||
<dnaseq>AGTGCGACAGACAGCCTCAGAGCTGGTGGGGAGACAGCATGCCACTGGAAAAATTCGTAGACATGGAATTCCTGGATCAAATGATACTAAGGGGGACTTGCCTGGAAGCAGACTTGTGTCCGCAGTATACAAACTCACCCTTTAATGCACACACTGACCAGATAACACAAACACATTTACCCCCACAGCACCTAGACTCTTCTCACAGTACACACACTTGCCTTCCAGTACACAGACATATCCAAAGGCACACCGACAAGCACCACAGCAAAAAGATGTTCCCCAGAACACATGGACACCCCAATCCCCGTATCATTAGACTCTCCCAGAGGCACGTATGTACTGCTTAATGCAGAGACTCACCTGAGGCACACTGATGCACCCCGCATGACACAGACTTGCCCCCCCATAAGGACTCTACTATGACACACAGACAATCCCAACATCACACACTGTTCCCACATCACACGAACCCATTTTAGGAAACACACAGCATACAGACTTACCCCATAGAACACGGCTTCCCCGACAAGCACACATACTCTCAAGGCCAGTAGACTCACCCCACAGCACACAGACTTTCTCTAGAGTGTACAGCTTCTTCCCACAGCAAACAGACTCTCCCCAGGGCACACAGACACCCCTGACATCACATACTCTCACCACAGACCATAGACTCGTCCTAGAGCACAGGGACTCTTGCCAATGAAACAGACTTTCCCGAGAATAGACTCATGAGACAGCTTGAAGACCCGCATCATGACACAAAGACTCTCCCACAACAGACAGACTCACCCCATTGTGTACAGACAAGCACCATAGGCCACAGACCATCACCTCAGGACACAGACTTGCCCAGCACCACACAGACACTCTGCAGAGCACGTAGAGTCACCCCGCAAAGCACAGACTAAACCCATACTACAGAGACTCTCCCTATAGCTTTCAGACAAGTTTACCCCACCACAGAGACATGCAACGGTACATCTTACAACATATATCACTCCTTGATGCACACAATTGTGCCACAGCACACAAACTTGTCCTACAGTGCACAAATTCATGTCACAAAAGACACACTCACCACACAATACAAATACTTGCTCCAGCCGGACGCGGTGGCTCACGCCTGTTATCCCAGCACTTTGGGAGGCCTAGGCAGGTGGATCACCTGACGTTGGGAGTTCGAGACCAGTCTCACCAACATGGAGAAACCCCGTCTCCACTAAAAATACAAAATTAGCCGGGCATGGTGGTGCATGCCTGTAATCTCAGCTGCTCCGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAAGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAAGGGCAAAACTTTGCCTCAAAAAAAAT</dnaseq> | <dnaseq>AGTGCGACAGACAGCCTCAGAGCTGGTGGGGAGACAGCATGCCACTGGAAAAATTCGTAGACATGGAATTCCTGGATCAAATGATACTAAGGGGGACTTGCCTGGAAGCAGACTTGTGTCCGCAGTATACAAACTCACCCTTTAATGCACACACTGACCAGATAACACAAACACATTTACCCCCACAGCACCTAGACTCTTCTCACAGTACACACACTTGCCTTCCAGTACACAGACATATCCAAAGGCACACCGACAAGCACCACAGCAAAAAGATGTTCCCCAGAACACATGGACACCCCAATCCCCGTATCATTAGACTCTCCCAGAGGCACGTATGTACTGCTTAATGCAGAGACTCACCTGAGGCACACTGATGCACCCCGCATGACACAGACTTGCCCCCCCATAAGGACTCTACTATGACACACAGACAATCCCAACATCACACACTGTTCCCACATCACACGAACCCATTTTAGGAAACACACAGCATACAGACTTACCCCATAGAACACGGCTTCCCCGACAAGCACACATACTCTCAAGGCCAGTAGACTCACCCCACAGCACACAGACTTTCTCTAGAGTGTACAGCTTCTTCCCACAGCAAACAGACTCTCCCCAGGGCACACAGACACCCCTGACATCACATACTCTCACCACAGACCATAGACTCGTCCTAGAGCACAGGGACTCTTGCCAATGAAACAGACTTTCCCGAGAATAGACTCATGAGACAGCTTGAAGACCCGCATCATGACACAAAGACTCTCCCACAACAGACAGACTCACCCCATTGTGTACAGACAAGCACCATAGGCCACAGACCATCACCTCAGGACACAGACTTGCCCAGCACCACACAGACACTCTGCAGAGCACGTAGAGTCACCCCGCAAAGCACAGACTAAACCCATACTACAGAGACTCTCCCTATAGCTTTCAGACAAGTTTACCCCACCACAGAGACATGCAACGGTACATCTTACAACATATATCACTCCTTGATGCACACAATTGTGCCACAGCACACAAACTTGTCCTACAGTGCACAAATTCATGTCACAAAAGACACACTCACCACACAATACAAATACTTGCTCCAGCCGGACGCGGTGGCTCACGCCTGTTATCCCAGCACTTTGGGAGGCCTAGGCAGGTGGATCACCTGACGTTGGGAGTTCGAGACCAGTCTCACCAACATGGAGAAACCCCGTCTCCACTAAAAATACAAAATTAGCCGGGCATGGTGGTGCATGCCTGTAATCTCAGCTGCTCCGGAGGCTGAGGCAGGAGAATCGCTTGAACCCAAGAGGCGGAGGTTGCAGTGAGCCAAGATTGTGCCACTGCACTCCAGCCTGGGCAACAAGGGCAAAACTTTGCCTCAAAAAAAAT</dnaseq> | ||
Latest revision as of 09:37, 12 August 2019
Contents
Annotated Information
Name
Approved symbol: LINC00632
Approved name: long intergenic non-protein coding RNA 632
HGNC ID: HGNC:27865
Alias symbols: ASINC
Alias names: alternatively spliced into CiRS-7
RefSeq ID: NR_028344
Ensembl ID: ENSG00000203930
LncBook ID: HSALNT0286909
Chromosome
Xq27.1
Characteristics
Please input characteristics information here.
Expression
Please input expression information here.
Regulation
Please input regulation information here.
Function
LINC00632 were responsible for driving ciRS-7 expression [1].
Disease
Please input disease information here.
Evolution
Please input evolution information here.
Labs working on this lncRNA
- Department of Biochemistry, Stanford University School of Medicine, Stanford, CA, United States of America.
- Institute for Stem Cell Biology and Regenerative Medicine, Stanford University School of Medicine, Stanford, CA, United States of America.
- Department of Microbiology and Immunology, Stanford University School of Medicine, Stanford, CA, United States of America.
- Department of Biomedical Data Science, Stanford University School of Medicine, Stanford, CA, United States of America.
References
- ↑ Shahriyari L. Effect of normalization methods on the performance of supervised learning algorithms applied to HTSeq-FPKM-UQ data sets: 7SK RNA expression as a predictor of survival in patients with colon adenocarcinoma. Brief Bioinform. 2017 Nov 3. doi: 10.1093/bib/bbx153.
Sequence
>gi|256222613|ref|NR_028344.1| Homo sapiens long intergenic non-protein coding RNA 632 (LINC00632), transcript variant 1, long non-coding RNA
000001 AGTGCGACAG ACAGCCTCAG AGCTGGTGGG GAGACAGCAT GCCACTGGAA AAATTCGTAG ACATGGAATT CCTGGATCAA 000080
000081 ATGATACTAA GGGGGACTTG CCTGGAAGCA GACTTGTGTC CGCAGTATAC AAACTCACCC TTTAATGCAC ACACTGACCA 000160
000161 GATAACACAA ACACATTTAC CCCCACAGCA CCTAGACTCT TCTCACAGTA CACACACTTG CCTTCCAGTA CACAGACATA 000240
000241 TCCAAAGGCA CACCGACAAG CACCACAGCA AAAAGATGTT CCCCAGAACA CATGGACACC CCAATCCCCG TATCATTAGA 000320
000321 CTCTCCCAGA GGCACGTATG TACTGCTTAA TGCAGAGACT CACCTGAGGC ACACTGATGC ACCCCGCATG ACACAGACTT 000400
000401 GCCCCCCCAT AAGGACTCTA CTATGACACA CAGACAATCC CAACATCACA CACTGTTCCC ACATCACACG AACCCATTTT 000480
000481 AGGAAACACA CAGCATACAG ACTTACCCCA TAGAACACGG CTTCCCCGAC AAGCACACAT ACTCTCAAGG CCAGTAGACT 000560
000561 CACCCCACAG CACACAGACT TTCTCTAGAG TGTACAGCTT CTTCCCACAG CAAACAGACT CTCCCCAGGG CACACAGACA 000640
000641 CCCCTGACAT CACATACTCT CACCACAGAC CATAGACTCG TCCTAGAGCA CAGGGACTCT TGCCAATGAA ACAGACTTTC 000720
000721 CCGAGAATAG ACTCATGAGA CAGCTTGAAG ACCCGCATCA TGACACAAAG ACTCTCCCAC AACAGACAGA CTCACCCCAT 000800
000801 TGTGTACAGA CAAGCACCAT AGGCCACAGA CCATCACCTC AGGACACAGA CTTGCCCAGC ACCACACAGA CACTCTGCAG 000880
000881 AGCACGTAGA GTCACCCCGC AAAGCACAGA CTAAACCCAT ACTACAGAGA CTCTCCCTAT AGCTTTCAGA CAAGTTTACC 000960
000961 CCACCACAGA GACATGCAAC GGTACATCTT ACAACATATA TCACTCCTTG ATGCACACAA TTGTGCCACA GCACACAAAC 001040
001041 TTGTCCTACA GTGCACAAAT TCATGTCACA AAAGACACAC TCACCACACA ATACAAATAC TTGCTCCAGC CGGACGCGGT 001120
001121 GGCTCACGCC TGTTATCCCA GCACTTTGGG AGGCCTAGGC AGGTGGATCA CCTGACGTTG GGAGTTCGAG ACCAGTCTCA 001200
001201 CCAACATGGA GAAACCCCGT CTCCACTAAA AATACAAAAT TAGCCGGGCA TGGTGGTGCA TGCCTGTAAT CTCAGCTGCT 001280
001281 CCGGAGGCTG AGGCAGGAGA ATCGCTTGAA CCCAAGAGGC GGAGGTTGCA GTGAGCCAAG ATTGTGCCAC TGCACTCCAG 001360
001361 CCTGGGCAAC AAGGGCAAAA CTTTGCCTCA AAAAAAAT
000081 ATGATACTAA GGGGGACTTG CCTGGAAGCA GACTTGTGTC CGCAGTATAC AAACTCACCC TTTAATGCAC ACACTGACCA 000160
000161 GATAACACAA ACACATTTAC CCCCACAGCA CCTAGACTCT TCTCACAGTA CACACACTTG CCTTCCAGTA CACAGACATA 000240
000241 TCCAAAGGCA CACCGACAAG CACCACAGCA AAAAGATGTT CCCCAGAACA CATGGACACC CCAATCCCCG TATCATTAGA 000320
000321 CTCTCCCAGA GGCACGTATG TACTGCTTAA TGCAGAGACT CACCTGAGGC ACACTGATGC ACCCCGCATG ACACAGACTT 000400
000401 GCCCCCCCAT AAGGACTCTA CTATGACACA CAGACAATCC CAACATCACA CACTGTTCCC ACATCACACG AACCCATTTT 000480
000481 AGGAAACACA CAGCATACAG ACTTACCCCA TAGAACACGG CTTCCCCGAC AAGCACACAT ACTCTCAAGG CCAGTAGACT 000560
000561 CACCCCACAG CACACAGACT TTCTCTAGAG TGTACAGCTT CTTCCCACAG CAAACAGACT CTCCCCAGGG CACACAGACA 000640
000641 CCCCTGACAT CACATACTCT CACCACAGAC CATAGACTCG TCCTAGAGCA CAGGGACTCT TGCCAATGAA ACAGACTTTC 000720
000721 CCGAGAATAG ACTCATGAGA CAGCTTGAAG ACCCGCATCA TGACACAAAG ACTCTCCCAC AACAGACAGA CTCACCCCAT 000800
000801 TGTGTACAGA CAAGCACCAT AGGCCACAGA CCATCACCTC AGGACACAGA CTTGCCCAGC ACCACACAGA CACTCTGCAG 000880
000881 AGCACGTAGA GTCACCCCGC AAAGCACAGA CTAAACCCAT ACTACAGAGA CTCTCCCTAT AGCTTTCAGA CAAGTTTACC 000960
000961 CCACCACAGA GACATGCAAC GGTACATCTT ACAACATATA TCACTCCTTG ATGCACACAA TTGTGCCACA GCACACAAAC 001040
001041 TTGTCCTACA GTGCACAAAT TCATGTCACA AAAGACACAC TCACCACACA ATACAAATAC TTGCTCCAGC CGGACGCGGT 001120
001121 GGCTCACGCC TGTTATCCCA GCACTTTGGG AGGCCTAGGC AGGTGGATCA CCTGACGTTG GGAGTTCGAG ACCAGTCTCA 001200
001201 CCAACATGGA GAAACCCCGT CTCCACTAAA AATACAAAAT TAGCCGGGCA TGGTGGTGCA TGCCTGTAAT CTCAGCTGCT 001280
001281 CCGGAGGCTG AGGCAGGAGA ATCGCTTGAA CCCAAGAGGC GGAGGTTGCA GTGAGCCAAG ATTGTGCCAC TGCACTCCAG 001360
001361 CCTGGGCAAC AAGGGCAAAA CTTTGCCTCA AAAAAAAT
