Difference between revisions of "LINC02474"
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==Annotated Information== | ==Annotated Information== | ||
===Name=== | ===Name=== | ||
| − | + | Approved symbol:LINC02474 | |
| − | |||
| − | |||
| + | Approved name:long intergenic non-protein coding RNA 2474 | ||
| + | |||
| + | HGNC ID HGNC:53417 | ||
| + | |||
| + | Alias symbol:RP11-400N13.2 | ||
| + | |||
| + | RefSeq ID:NR_149071 | ||
===Characteristics=== | ===Characteristics=== | ||
''LINC02474'' is a long non-protein coding RNA located at chromosome position 1q41. <ref name="ref1" /> | ''LINC02474'' is a long non-protein coding RNA located at chromosome position 1q41. <ref name="ref1" /> | ||
| Line 17: | Line 22: | ||
===Expression=== | ===Expression=== | ||
| − | + | {| class='wikitable' style="text-align:center" | |
| + | |- | ||
| + | ! | Experiment | ||
| + | ! | Forward primer | ||
| + | ! | Reverse primer | ||
| + | |- | ||
| + | | rowspan="1"|RT-qPCR | ||
| + | | | 5'-CCCCTGTCCTCCTGCTCTT- 3' | ||
| + | | | 5'-CGGGCAGTGTCAGTCTTCA- 3'<ref name="ref1" /> | ||
| + | |} | ||
| + | It is differentially expressed in gastric cancer tissues.<ref name="ref1" /> | ||
===Disease=== | ===Disease=== | ||
Latest revision as of 12:27, 25 January 2021
LINC02474, long intergenic non-protein coding RNA 2474, disregulated in gastric cancer.
Contents
Annotated Information
Name
Approved symbol:LINC02474
Approved name:long intergenic non-protein coding RNA 2474
HGNC ID HGNC:53417
Alias symbol:RP11-400N13.2
RefSeq ID:NR_149071
Characteristics
LINC02474 is a long non-protein coding RNA located at chromosome position 1q41. [1]
Function
Please input information here.
Regulation
According to the findings of the transcriptome sequencing and bioinformatics analyses, RP11-400N13.2 was upregulated however, the RT-qPCR validation confirmed that RP11-400N13.2 was downregulated in GC tissues compared with normal adjacent tissues.[1]
Expression
| Experiment | Forward primer | Reverse primer |
|---|---|---|
| RT-qPCR | 5'-CCCCTGTCCTCCTGCTCTT- 3' | 5'-CGGGCAGTGTCAGTCTTCA- 3'[1] |
It is differentially expressed in gastric cancer tissues.[1]
Disease
Gastric cancer [1]
Labs working on this lncRNA
Department of Laboratory Medicine, Shanghai Shuguang Hospital Affiliated with Shanghai University of TCM, Shanghai 200021, P.R. China
References
Sequence
>ENST00000441160.1, Homo sapiens lincRNA LINC02474 cdna
000081 AATTTCAAAT CTGACCTTTG CAAGAGGGTC CGAGACATTT GCATCATCAT TCAGTGAGAC CTGTAAACAC AGCATCTGCC 000160
000161 TTTGACCACA TCCATCTGGA AGAACCTGAG AGATAATCCA TTTTATGAAA TTTTCCCTAC CCTGAAATGG GAGAATGGAA 000240
000241 CCAAGTTCTG GAGAAGCTCC TGGGCTGCTA GAACTGGGTG CTGGAGAAAC CAGGTATGCT GAAGGAGGTT GATGAAACAA 000320
000321 ACACACTGTA ATCAGAAAGA GAATCCCCTT CCTCCTGCAG TATTCCACCA ATAACTTCTA CTGACAAAGC TTAACATTAT 000400
000401 GTCAGCTGAC TTAGAAGAAA TATTTGCAGG GTCCAGCTGC ATTATCCACA GAATAGTGAA TGAAGGATGG AGTTGGAGCT 000480
000481 GAAAGAAAAT AAGCTGACAA CTGGCACAGT AAAGTATTTG GCTCCACAGT CTCTACGTAT ACCCTTCTAT ACATATTTAC 000560
000561 ACTTCTGTGC AACAATGAAA CAACTCTATA TTTCACCTAA AAAGATACAG CTGTCTTAAA ATGTAAAGAA GTCCTCAGCT 000640
000641 TTGCTTTACA GTGAGGAGAT GCACAGTCTC AGTTGTCATT ATTTTCATCA TTGGCTATAT ATTAAATATT TCTAAAATCC 000720
000721 TGTCACAGTC TCTGTTACCT AAAAATAAAT TTATAAAATT AACCCACAAG AACTTATATG TAAAATAAAA ATAAGAAGAA 000800
000801 GAAAATGTTA GCTTATATGA GGGGTCTTCA AAAAGTTCAC GGAAAATGTG TATTTTTTAT ATATATAAAA ATAGATGTGT 000880
000881 GGATTTCAAA CATTTTCGGC ACAAAAGTAA ACTCGTGCTA ACTTGTTATA ACATGCCTGA ACAGAATCTA ATTTGAAGCA 000960
000961 CTGAGAAGGA TAAGGCATCC ATTTGAAAAG GACTCCTATA TTGCAACATG AATTCTGCTA AAATTGAAGC AAGAACAAAC 001040
001041 ATCAAATTTA TGATGAAGTT TGGGTAGAAG AACGATGAAA TTAGTGACGC TTTATAAAAA GTTTATTGGG ACAATACCCC 001120
001121 AAATGAATCA GCAGTTTAAA AATGGATA
