Difference between revisions of "ENST00000568654.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
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===Functio...") |
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Revision as of 08:27, 25 July 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000568654.1 |
Source |
Gencode19 |
Same with |
lnc-SLC39A6-1:1 |
Classification |
intergenic |
Length |
609 nt |
Genomic location |
chr18-:33759959..33767411 |
Exon number |
2 |
Exons |
33759959..33760353,33767198..33767411 |
Genome context |
|
Sequence |
000001 CCAGCCTCCC AGTCTCTCGG AATCCGCAGC CTAGGTGTGG CGCCCCGACC GGACTTTCAC TTCTGGCCAG CCCTTTCCCC 000080
000081 ACCTGGGCGC GGGAGCGGGT GCCAGTCTTT AAACAACCTC TCGATGGGTC CCACGAAGAT GTTTCCAGAC CCTTGGAATG 000160 000161 CCAAGTTCAA GTTTAGCTAT GTCTCGCGGA GAGGCCGGTG GAAGAAGCAA CGAGAATGAA GCACCCCAGT TCTCTGCTGA 000240 000241 GCACATGGGC ATCTGCAATA AAGATTTAAT TTCCCAGCTT CTCCTGAAGC TCGGTATGGC CACAACACTA AATTCTGCCC 000320 000321 GAGGAGATTA AGCAAAATAG TATGGGACTT CCAAGAAATG TTTTTAAAGT CAGGGGCAGG CCTTTCTTCA TGCCTTCTTC 000400 000401 CTCTTTGCTG GCTGGAACGC AAAGACCATG GCAGGAGGCC AAGCAGCCAT CCTGGAAGGT GAAAGCCTCA TACTAAGGAC 000480 000481 GTCAGACAGC GAAATAAGAG CCTGGGTCCT TGACCCTGTA GACATCTCCC TCCCCATCCT GGTCTGTCTG CCTTGACTCC 000560 000561 TTTCATATGA GAGAAATAAA CTTTTAACTT GCGTAAACCA GAAAGAAAA |
Predicted Small Protein
Name | ENST00000568654.1_smProtein_341:475 |
Length | 45 |
Molecular weight | 5065.8777 |
Aromaticity | 0.136363636364 |
Instability index | 55.8386363636 |
Isoelectric point | 11.5923461914 |
Runs | 9 |
Runs residual | 0.0414438502674 |
Runs probability | 0.0420420420421 |
Amino acid sequence | MGLPRNVFKVRGRPFFMPSSSLLAGTQRPWQEAKQPSWKVKASY |
Secondary structure | LLLLLLEEEELLLEEELLLLLLLLLLLLLHHHLLLLLEEEEELL |
PRMN | - |
PiMo | - |