Difference between revisions of "ENST00000425295.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
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[[Category:Intergenic]] | [[Category:Intergenic]] | ||
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| + | {{lncrnadb| | ||
| + | tID = ENST00000425295.1| | ||
| + | ltID = KDM5BAS1| | ||
| + | ann = <tab class=wikitable sep=tab head=top> | ||
| + | Section Description | ||
| + | ID KDM5BAS1 | ||
| + | Characteristics Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product. | ||
| + | Expression Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues. | ||
| + | Function KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand. | ||
| + | </tab>| | ||
| + | }} | ||
Revision as of 10:41, 6 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000425295.1 |
| Source |
Gencode19 |
| Same with |
lnc-RP11-480I12.4.1-1:4 |
| Classification |
intergenic |
| Length |
634 nt |
| Genomic location |
chr1+:202780090..202781041 |
| Exon number |
2 |
| Exons |
202780090..202780498,202780817..202781041 |
| Genome context |
|
| Sequence |
000001 GACCTGGGCA ACCCCAGCCT GGAGGTGCCG GGGCCGGAGC TCCCAGAGGG CTGGGTGCGA GGCCTAGGCG GGGTCAGGTT 000080
000081 CGGGTTCCTA GGCCATAGCG GAGCTGCAGC CCAGGCGGCC GGAGCGGAAC CCAGCCCCGC TCCGAGTGCC ACGTCTCCAG 000160 000161 GAACCCCCTC CTTACTCTTG GACAACACTC CGCCCCCGCC CGGGCCTCCG TCCCCCAAAC CGCCCTCATT TGTGCAGCGC 000240 000241 CAGATCCTTC GGACACATCC CTAGGTGTCT CCATCCTCAT TCGGTCCATC CAACTCCCAG ACCTCACGTC AACCGGCTGC 000320 000321 ACCCCACTTT CCAGCCTGCG CCCCAGATCT GCAGCCTTCG CCCCTAGATA CACCCGCCTG GTGATGAGGC GCTCCTCGCG 000400 000401 TTCCTTCCGT CTCCAGTGCA CCGGCTTTCC CTCGTCCTCT GCGCAGTCCA TCTCAGCTCA TCTCTCCAAT TCAATGCCAT 000480 000481 CATCTCTCCT CACCATCTCT CGGTGCCCTG GAATGTTTGC TGTCAGATGT CCCCTGTGAA ACCCACAAAC GCTTGCGATT 000560 000561 TGGCCTCCTT GTTTTATTTT GTGTAGTCCT ACAACGTCTT GTTACTACCC CCTATTACAA CACTTATAAC TCAG |
Annotation (From lncRNAdb)
| Section | Description |
|---|---|
| ID | KDM5BAS1 |
| Characteristics | Spliced two exon transcript. Multiple splice variants, ~550- ~750 nt in length, second exon varies. Expressed bidirectionally with KDM5B. In-vitro translation showed no sign of protein product. |
| Expression | Expressed in HeLa, K562 and GM12878 cells, plus a number of human tissues. |
| Function | KDM5B-AS1 expression appears to stimulate KLHL12 gene expression (in HeLa cells). A gene located ~80kb from KDM5B-AS1 on the opposite strand. |
