Lnc-PRL-6:2

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID	lnc-PRL-6:2
Source	LNCipedia2.1
Same with	NONHSAT108039
Classification	intergenic
Length	280 nt
Genomic location	chr6-:21486540..21490497
Exon number	2
Exons	21486540..21486760,21490439..21490497
Genome context
Sequence	000001 TGAATATCAG CACGGATCAC TGCAAAGAAG TTGGAACTCA TCTCACATGA ACTTCTCAGG TTCTCTTACA AGACCACCAA 000080 000081 CATTCTTCAA ACATCAGTGA AATAAAACAG GAGGAGGGTT TCGAGCTCTG GATCCTCAGC CTGGAAATGT CACAATTTAA 000160 000161 TCCCAAAGGT TTGCTGTGAA GTTGTAAGCA TGACAGTGTG AAACTCGACA GATTATTCTT GAATTCTTTG TTTGTTTTCG 000240 000241 TTGTGACCCG ACTCTCATAA AATTTATGTT TTCTTCCAAA

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Annotation (From lncRNAdb)

[lnc-PRL-6:2]

Section	Description
ID	BX118339
Characteristics	Longest identified isoform is 738bp with 4 exons. Deep sequencing has also identified two shorter isoforms (Cabili (2011)). Some exons overlap multiple SINEs
Expression	Transcript isoform(s) expressed in testis (Cabili (2011)) and also reported in fetal brain (Vandeweyer (2012)).
Function	Transcript disrupted by a balanced translocation, 46,XY,t(2;6)(p15;p22.3), in a patient with West Syndrome (a form of infant epilepsy). Lack of effect on other nearby genes or presence of mutations in known West Syndrome disease genes leads to possible implication of BX118339 in the clinical phenotype (Vandeweyer (2012)).

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