Difference between revisions of "NONHSAT074279"

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sequence = <dnaseq>AGCGGAGGGAAGTCAGGCTCTTCCACGTTCCCGTATTTTCCTGTGGAGCTGCTCAGTGCCCGGCTTAGAGGACCAGGAATGGGTAATCACCAGCCGTACGCTGGAGGCTGGAGCCGCTACACCGTGGCTCGCCTCGCTGCGACTGGTGGTAACCGCGACCGAGACGGCAGTGCGGCGGAAGCGATACATTTTATACACAGATACAATTTTATTGTAACACATTAAGAAAAACAGCTTTGTAATTTTTTATTTAAAAATATTGGCCTGGCGCGGTGGCTCATGCCTGTAATCATAGCATTATGGGAGGCTGAGGCGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAGAAATGAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCTGAGATGGCACCACTGGACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAGAAAACTCAAGAATGACATGGCAGTGGTTTGGAAATCCGAGAGTGAGAGAGACATCCAGGCTTTGCCGCAAGCCTCACCAGAACCTCCCTGGGTGTGAAGAGTCCTGTTCGGGAGCAGGGCTGTGAGGCGGGGCAGGCCAGGGCTTGTCTGGGTCACAGGCACCAACCCCTTCCTCAGGTCGGTGCACCACTGCGTGACCTCCAGGCAGCCACAGCCTGGAAAAGCACTCGGTTACCACCTTGCTCAACACCTGTGCCCGGAGCATCCACAAGGCCTGCCTCGGCTGCTTAGCCAGGACTGCAGGGATGGCCCGCAGCCTCATCGGGGCCAAGGACGCATGCCTCCTGTCAGACACTTCTAGGTGTTGGCGTCCATGGAGAGCCTGGAGTTAGGAGAACACAGAGGACATAGGAAACCCTTCAAACACACATCGGATTCTCTGCTCACAGTTTTGGGTTCAGGCTGTGCTGCTTTGGGCAGGACTCGTCACTGTGTCCCCCACTCCATGAAACTGGGCCTGCTGTCCTGTTAGGATGCTGTAAGCCCCCGGGCCTGGGCTGTCCTTTCTGACGCACTGTCCCATTCCTTGGCCTGGTTCATCCCCAGCTTCCTGGCAAAGTTCTGCTCCCTGAAGCAGGAAGAGGCTGAGATTAATGCCAACGAAGTGGGGCCGTGGGCCTGGGAAGACTGTGTGGCTGGCTGAGGGTGGGCACTAAGCTGGCCACCCCACCCCCGACATGGACATGGCTGTGCTGTGGCGGAAGGGGTGGTGCGGGCATGGCCACGGCACTCGAGACAGCCCTCCGAGGAGGAGGGCGAGCCTGGCTGGACCCCCTGTCTGCGGTGCTGTGTCAGGGCAGCAGAGGACAGCCTCTTGCCCCCAGGAGTGTGCAGTGTGGGCAAGAGACAGAGTGATCATGTGTTTGGAACGCAGCTCCAGCCCAGCCAGGGGACCAGAAAAGCCCTCCCGCTTCCAGGGAGGATGTGCATGGCTCTGCCAATGCCTGTCTCCCAGGGCCGCTGGCAGGTCCCAGGATGCGCAAGACTGGGCTGCCCAGGCAGGTCCCTGCAGACAGCGGGGCCTGGGCTAGAGGCCAAGGGCTGGGACTGGGAAGGGACGCGACGCCTGATAGCCAGTGAGGAGCCAGGCACACAACTTGGAAATAAACAAGCTTTATTTTCAGTTTCAACAGGTAAGGCGATACCTGCTTCATCGTGTGCTTTTATGTAAATGCCAAATAGCAAAATAACAGCTAGAAAATAAACAGTTTGTCAGTTTGGAGACCAAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>AGCGGAGGGAAGTCAGGCTCTTCCACGTTCCCGTATTTTCCTGTGGAGCTGCTCAGTGCCCGGCTTAGAGGACCAGGAATGGGTAATCACCAGCCGTACGCTGGAGGCTGGAGCCGCTACACCGTGGCTCGCCTCGCTGCGACTGGTGGTAACCGCGACCGAGACGGCAGTGCGGCGGAAGCGATACATTTTATACACAGATACAATTTTATTGTAACACATTAAGAAAAACAGCTTTGTAATTTTTTATTTAAAAATATTGGCCTGGCGCGGTGGCTCATGCCTGTAATCATAGCATTATGGGAGGCTGAGGCGGGCAGATCATGAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAAAGAAATGAGCCGGGCGTGGTGGCGGGCGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTAGGAGAATGGCGTGAACCCGGGAGGTGGAGCTTGCAGTGAGCTGAGATGGCACCACTGGACTCCAGCCTGGGCGACAGAGTGAGACTCCATCTCAAAAAAAAAAAAAGAAAACTCAAGAATGACATGGCAGTGGTTTGGAAATCCGAGAGTGAGAGAGACATCCAGGCTTTGCCGCAAGCCTCACCAGAACCTCCCTGGGTGTGAAGAGTCCTGTTCGGGAGCAGGGCTGTGAGGCGGGGCAGGCCAGGGCTTGTCTGGGTCACAGGCACCAACCCCTTCCTCAGGTCGGTGCACCACTGCGTGACCTCCAGGCAGCCACAGCCTGGAAAAGCACTCGGTTACCACCTTGCTCAACACCTGTGCCCGGAGCATCCACAAGGCCTGCCTCGGCTGCTTAGCCAGGACTGCAGGGATGGCCCGCAGCCTCATCGGGGCCAAGGACGCATGCCTCCTGTCAGACACTTCTAGGTGTTGGCGTCCATGGAGAGCCTGGAGTTAGGAGAACACAGAGGACATAGGAAACCCTTCAAACACACATCGGATTCTCTGCTCACAGTTTTGGGTTCAGGCTGTGCTGCTTTGGGCAGGACTCGTCACTGTGTCCCCCACTCCATGAAACTGGGCCTGCTGTCCTGTTAGGATGCTGTAAGCCCCCGGGCCTGGGCTGTCCTTTCTGACGCACTGTCCCATTCCTTGGCCTGGTTCATCCCCAGCTTCCTGGCAAAGTTCTGCTCCCTGAAGCAGGAAGAGGCTGAGATTAATGCCAACGAAGTGGGGCCGTGGGCCTGGGAAGACTGTGTGGCTGGCTGAGGGTGGGCACTAAGCTGGCCACCCCACCCCCGACATGGACATGGCTGTGCTGTGGCGGAAGGGGTGGTGCGGGCATGGCCACGGCACTCGAGACAGCCCTCCGAGGAGGAGGGCGAGCCTGGCTGGACCCCCTGTCTGCGGTGCTGTGTCAGGGCAGCAGAGGACAGCCTCTTGCCCCCAGGAGTGTGCAGTGTGGGCAAGAGACAGAGTGATCATGTGTTTGGAACGCAGCTCCAGCCCAGCCAGGGGACCAGAAAAGCCCTCCCGCTTCCAGGGAGGATGTGCATGGCTCTGCCAATGCCTGTCTCCCAGGGCCGCTGGCAGGTCCCAGGATGCGCAAGACTGGGCTGCCCAGGCAGGTCCCTGCAGACAGCGGGGCCTGGGCTAGAGGCCAAGGGCTGGGACTGGGAAGGGACGCGACGCCTGATAGCCAGTGAGGAGCCAGGCACACAACTTGGAAATAAACAAGCTTTATTTTCAGTTTCAACAGGTAAGGCGATACCTGCTTCATCGTGTGCTTTTATGTAAATGCCAAATAGCAAAATAACAGCTAGAAAATAAACAGTTTGTCAGTTTGGAGACCAAAAAAAAAAAAAAAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG029243]]

Revision as of 05:44, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT074279

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1862 nt

Genomic location

chr2+:130887194..130896990

Exon number

6

Exons

130887194..130887371,130892718..130893118,130894265..130894397,130895211..130895444,130895649..130895736,130896184..130896990

Genome context

Sequence
000001 AGCGGAGGGA AGTCAGGCTC TTCCACGTTC CCGTATTTTC CTGTGGAGCT GCTCAGTGCC CGGCTTAGAG GACCAGGAAT 000080
000081 GGGTAATCAC CAGCCGTACG CTGGAGGCTG GAGCCGCTAC ACCGTGGCTC GCCTCGCTGC GACTGGTGGT AACCGCGACC 000160
000161 GAGACGGCAG TGCGGCGGAA GCGATACATT TTATACACAG ATACAATTTT ATTGTAACAC ATTAAGAAAA ACAGCTTTGT 000240
000241 AATTTTTTAT TTAAAAATAT TGGCCTGGCG CGGTGGCTCA TGCCTGTAAT CATAGCATTA TGGGAGGCTG AGGCGGGCAG 000320
000321 ATCATGAGGT CAGGAGATCG AGACCATCCT GGCTAACATG GTGAAACCCC GTCTCTACTA AAAATACAAA AAAGAAATGA 000400
000401 GCCGGGCGTG GTGGCGGGCG CCTGTAGTCC CAGCTACTTG GGAGGCTGAG GTAGGAGAAT GGCGTGAACC CGGGAGGTGG 000480
000481 AGCTTGCAGT GAGCTGAGAT GGCACCACTG GACTCCAGCC TGGGCGACAG AGTGAGACTC CATCTCAAAA AAAAAAAAAG 000560
000561 AAAACTCAAG AATGACATGG CAGTGGTTTG GAAATCCGAG AGTGAGAGAG ACATCCAGGC TTTGCCGCAA GCCTCACCAG 000640
000641 AACCTCCCTG GGTGTGAAGA GTCCTGTTCG GGAGCAGGGC TGTGAGGCGG GGCAGGCCAG GGCTTGTCTG GGTCACAGGC 000720
000721 ACCAACCCCT TCCTCAGGTC GGTGCACCAC TGCGTGACCT CCAGGCAGCC ACAGCCTGGA AAAGCACTCG GTTACCACCT 000800
000801 TGCTCAACAC CTGTGCCCGG AGCATCCACA AGGCCTGCCT CGGCTGCTTA GCCAGGACTG CAGGGATGGC CCGCAGCCTC 000880
000881 ATCGGGGCCA AGGACGCATG CCTCCTGTCA GACACTTCTA GGTGTTGGCG TCCATGGAGA GCCTGGAGTT AGGAGAACAC 000960
000961 AGAGGACATA GGAAACCCTT CAAACACACA TCGGATTCTC TGCTCACAGT TTTGGGTTCA GGCTGTGCTG CTTTGGGCAG 001040
001041 GACTCGTCAC TGTGTCCCCC ACTCCATGAA ACTGGGCCTG CTGTCCTGTT AGGATGCTGT AAGCCCCCGG GCCTGGGCTG 001120
001121 TCCTTTCTGA CGCACTGTCC CATTCCTTGG CCTGGTTCAT CCCCAGCTTC CTGGCAAAGT TCTGCTCCCT GAAGCAGGAA 001200
001201 GAGGCTGAGA TTAATGCCAA CGAAGTGGGG CCGTGGGCCT GGGAAGACTG TGTGGCTGGC TGAGGGTGGG CACTAAGCTG 001280
001281 GCCACCCCAC CCCCGACATG GACATGGCTG TGCTGTGGCG GAAGGGGTGG TGCGGGCATG GCCACGGCAC TCGAGACAGC 001360
001361 CCTCCGAGGA GGAGGGCGAG CCTGGCTGGA CCCCCTGTCT GCGGTGCTGT GTCAGGGCAG CAGAGGACAG CCTCTTGCCC 001440
001441 CCAGGAGTGT GCAGTGTGGG CAAGAGACAG AGTGATCATG TGTTTGGAAC GCAGCTCCAG CCCAGCCAGG GGACCAGAAA 001520
001521 AGCCCTCCCG CTTCCAGGGA GGATGTGCAT GGCTCTGCCA ATGCCTGTCT CCCAGGGCCG CTGGCAGGTC CCAGGATGCG 001600
001601 CAAGACTGGG CTGCCCAGGC AGGTCCCTGC AGACAGCGGG GCCTGGGCTA GAGGCCAAGG GCTGGGACTG GGAAGGGACG 001680
001681 CGACGCCTGA TAGCCAGTGA GGAGCCAGGC ACACAACTTG GAAATAAACA AGCTTTATTT TCAGTTTCAA CAGGTAAGGC 001760
001761 GATACCTGCT TCATCGTGTG CTTTTATGTA AATGCCAAAT AGCAAAATAA CAGCTAGAAA ATAAACAGTT TGTCAGTTTG 001840
001841 GAGACCAAAA AAAAAAAAAA AA
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Predicted Small Protein

Name NONHSAT074279_smProtein_1337:1474
Length 46
Molecular weight 4683.268
Aromaticity 0.0222222222222
Instability index 47.3911111111
Isoelectric point 6.10589599609
Runs 8
Runs residual 0.0155303030303
Runs probability 0.0254924041688
Amino acid sequence MATALETALRGGGRAWLDPLSAVLCQGSRGQPLAPRSVQCGQETE
Secondary structure LHHHHHHHHHLLLLEEELHHHHEEELLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -