Difference between revisions of "NONHSAT139163"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
Line 42: | Line 42: | ||
sequence = <dnaseq>GCTGGGCACCGGCGCAGGTTCGCTTTCCGGCGGTTGCACCGGGCCGGGGTGCCAGCGCCCGCCTTCCCGTTTCCTCCCGTTCCGCAGCGCGCCCACGGCCTGTGACCCCGGCGACCGCTCCCCAGTGACGAGAGAGCGGGGCCGGGCGCTGCTCCGGCCTGACCTGCGAAGGGACCTCGGTCCAGTCCCCTGTTGCGCCGCGCCCCCTGTCCGTCCGTGCGCGGGCCAGTCAGGGGCCAGTGTCTCGAGCGGTCGAGGTCGCAGACCTAGAGGCGCCCCACAggccggcccggggcgctgggagcgccggccgcgggccgggTGGGGATGCCTCTGCACGTGAAGTGGCCGTTCCCCGCGGTGCCGCCGCTCACCTGGACCCTGGCCAGCAGCGTCGTCATGGGCTTGGTGGGCACCTACAGCTGCTTCTGGACCAAGTACATGAACCACCTGACCGTGCACAACAGGGAGGTGCTGTACGAGCTCATCGAGAAGCGAGGCCCGGCCACGCCCCTCATCACCGTGTCCAATCACCAGTCCTGCATGGACGACCCTCATCTCTGGGGGATCCTGAAACTCCGCCACATCTGGAACCTGAAGTTGATGCGTTGGTGAGGAGGAATGGGCCCCTCGAAGTGGGCCGGGCCGGCCCCACCTGCCTCTGCCCAGATTTGCCCTCCTCCTGCTCTGCCCAGGAGGACCCCTGCAGCTGCAGACATCTGCTTCACCAAGGAGCTACACTCCCACTTCTTCAGCTTGGGCAAGTGTGTGCCTGTGTGCCGAGGAGATGGCGTCTACCAGAAGGGGATGGACTTCATTTTGGAGAAGCTCAACCATGGGGACTGGGTGCATATCTTCCCAGAAGGTCAGCAGGGCTGACTGGGTCGAGCCCCCCCAGTATGAGCGGGATGGGCTCCCAAGCCTCGCCTCTGTGCTCTCTCACCAGGGAAAGTGAACATGAGTTCCGAATTCCTGCGTTTCAAGTGGGGTAAGGGCTGCTGGTCTCTGGCCACAGCCATCCTCCCGGCCCAGAGATGGCCCTGTGGGCCCCTGGCTCCCGCCCCCTCGGGCTGGCTTGTATGGGGGTAGATGGGCGTGTTTGTAGCGCCAGGAAGGGGACAGGTGCTGAGACTAGGCCTGCCTCTCGCAGGGGCTTGCCCAAGGGAGCTGAATTGAACTGGAGGATGTCGGGGGTGGCAGTGGCCAGAGGCTGGCACAGAAGCTTGGCTCAGGGCCCAGCTTATGCTAACATTTCTACCTCCCCCCTGGGCAGGAATCGGGCGCCTGATTGCTGAGTGTCATCTCAACCCCATCATCCTGCCCCTGTGGCATGTCGGAATGAATGACGTCCTTCCTAACAGTCCGCCCTACTTCCCCCGCTTTGGACAGAAAATCACTGTGCTGATCGGGAAGCCCTTCAGTGCCCTGCCTGTACTCGAGCGGCTCCGGGCGGAGAACAAGTCGGCTGTGGAGATGCGGAAAGCCCTGACGGACTTCATTCAAGAGGAATTCCAGCATCTGAAGACTCAGGCAGAGCAGCTCCACAACCACCTCCAGCCTGGGAGATAGGCCTTGCTTGCTGCCTTCTGGATTCTTGGCCCGCACAGAGCTGGGGCTGAGGGATGGACTGATGCTTTTAGCTCAAACGTGGCTTTTAGACAGATTTGTTCATAGACCCTCTCAAGTGCCCTCTCCGAGCTGGTAGGCATTCCAGCTCCTCCGTGCTTCCTCAGTTACACAAAGGACCTCAGCTGCTTCTCCCACTTGGCCAAGCAGGGAGGAAGAAGCTTAGGCAGGGCTCTCTTTCCTTCTTGCCTTCAGATGTTCTCTCCCAGGGGCTGGCTTCAGGAGGGAGCATAGAAGGCAGGTGAGCAACCAGTTGGCTAGGGGAGCAGGGGGCCCACCAGAGCTGTGGAGAGGGGACCCTAAGACTCCTCGGCCTGGCTCCTACCCACCGCCCTTGCCGAACCAGGAGCTGCTCACTACCTCCTCAGGGATGGCCGTTGGCCACGTCTTCCTTCTGCCTGAGCTTCCCCCCGACCACAGGCCCTTTCCTCAGGCAAGGTCTGGCCTCAGGTGGGCCGCAGGCGGGAAAAGCAGCCCTTGGCCAGAAGTCAAGCCCAGCCACGTGGAGCCTAGAGTGAGGGCCTGAGGTCTGGCTGCTTGCCCCCATGCTGGCGCCAACAACTTCTCCATCCTTTCTGCCTCTCAACATCACTTGAATC</dnaseq>| | sequence = <dnaseq>GCTGGGCACCGGCGCAGGTTCGCTTTCCGGCGGTTGCACCGGGCCGGGGTGCCAGCGCCCGCCTTCCCGTTTCCTCCCGTTCCGCAGCGCGCCCACGGCCTGTGACCCCGGCGACCGCTCCCCAGTGACGAGAGAGCGGGGCCGGGCGCTGCTCCGGCCTGACCTGCGAAGGGACCTCGGTCCAGTCCCCTGTTGCGCCGCGCCCCCTGTCCGTCCGTGCGCGGGCCAGTCAGGGGCCAGTGTCTCGAGCGGTCGAGGTCGCAGACCTAGAGGCGCCCCACAggccggcccggggcgctgggagcgccggccgcgggccgggTGGGGATGCCTCTGCACGTGAAGTGGCCGTTCCCCGCGGTGCCGCCGCTCACCTGGACCCTGGCCAGCAGCGTCGTCATGGGCTTGGTGGGCACCTACAGCTGCTTCTGGACCAAGTACATGAACCACCTGACCGTGCACAACAGGGAGGTGCTGTACGAGCTCATCGAGAAGCGAGGCCCGGCCACGCCCCTCATCACCGTGTCCAATCACCAGTCCTGCATGGACGACCCTCATCTCTGGGGGATCCTGAAACTCCGCCACATCTGGAACCTGAAGTTGATGCGTTGGTGAGGAGGAATGGGCCCCTCGAAGTGGGCCGGGCCGGCCCCACCTGCCTCTGCCCAGATTTGCCCTCCTCCTGCTCTGCCCAGGAGGACCCCTGCAGCTGCAGACATCTGCTTCACCAAGGAGCTACACTCCCACTTCTTCAGCTTGGGCAAGTGTGTGCCTGTGTGCCGAGGAGATGGCGTCTACCAGAAGGGGATGGACTTCATTTTGGAGAAGCTCAACCATGGGGACTGGGTGCATATCTTCCCAGAAGGTCAGCAGGGCTGACTGGGTCGAGCCCCCCCAGTATGAGCGGGATGGGCTCCCAAGCCTCGCCTCTGTGCTCTCTCACCAGGGAAAGTGAACATGAGTTCCGAATTCCTGCGTTTCAAGTGGGGTAAGGGCTGCTGGTCTCTGGCCACAGCCATCCTCCCGGCCCAGAGATGGCCCTGTGGGCCCCTGGCTCCCGCCCCCTCGGGCTGGCTTGTATGGGGGTAGATGGGCGTGTTTGTAGCGCCAGGAAGGGGACAGGTGCTGAGACTAGGCCTGCCTCTCGCAGGGGCTTGCCCAAGGGAGCTGAATTGAACTGGAGGATGTCGGGGGTGGCAGTGGCCAGAGGCTGGCACAGAAGCTTGGCTCAGGGCCCAGCTTATGCTAACATTTCTACCTCCCCCCTGGGCAGGAATCGGGCGCCTGATTGCTGAGTGTCATCTCAACCCCATCATCCTGCCCCTGTGGCATGTCGGAATGAATGACGTCCTTCCTAACAGTCCGCCCTACTTCCCCCGCTTTGGACAGAAAATCACTGTGCTGATCGGGAAGCCCTTCAGTGCCCTGCCTGTACTCGAGCGGCTCCGGGCGGAGAACAAGTCGGCTGTGGAGATGCGGAAAGCCCTGACGGACTTCATTCAAGAGGAATTCCAGCATCTGAAGACTCAGGCAGAGCAGCTCCACAACCACCTCCAGCCTGGGAGATAGGCCTTGCTTGCTGCCTTCTGGATTCTTGGCCCGCACAGAGCTGGGGCTGAGGGATGGACTGATGCTTTTAGCTCAAACGTGGCTTTTAGACAGATTTGTTCATAGACCCTCTCAAGTGCCCTCTCCGAGCTGGTAGGCATTCCAGCTCCTCCGTGCTTCCTCAGTTACACAAAGGACCTCAGCTGCTTCTCCCACTTGGCCAAGCAGGGAGGAAGAAGCTTAGGCAGGGCTCTCTTTCCTTCTTGCCTTCAGATGTTCTCTCCCAGGGGCTGGCTTCAGGAGGGAGCATAGAAGGCAGGTGAGCAACCAGTTGGCTAGGGGAGCAGGGGGCCCACCAGAGCTGTGGAGAGGGGACCCTAAGACTCCTCGGCCTGGCTCCTACCCACCGCCCTTGCCGAACCAGGAGCTGCTCACTACCTCCTCAGGGATGGCCGTTGGCCACGTCTTCCTTCTGCCTGAGCTTCCCCCCGACCACAGGCCCTTTCCTCAGGCAAGGTCTGGCCTCAGGTGGGCCGCAGGCGGGAAAAGCAGCCCTTGGCCAGAAGTCAAGCCCAGCCACGTGGAGCCTAGAGTGAGGGCCTGAGGTCTGGCTGCTTGCCCCCATGCTGGCGCCAACAACTTCTCCATCCTTTCTGCCTCTCAACATCACTTGAATC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG055589]] |
Revision as of 05:53, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT139163 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2225 nt |
Genomic location |
chrX+:153639854..153649999 |
Exon number |
8 |
Exons |
153639854..153640289,153640423..153640551,153641544..153641676,153641819..153641904,153647882..153648433,153648551..153648603,153648997..153649074,153649242..153649999 |
Genome context |
|
Sequence |
000001 GCTGGGCACC GGCGCAGGTT CGCTTTCCGG CGGTTGCACC GGGCCGGGGT GCCAGCGCCC GCCTTCCCGT TTCCTCCCGT 000080
000081 TCCGCAGCGC GCCCACGGCC TGTGACCCCG GCGACCGCTC CCCAGTGACG AGAGAGCGGG GCCGGGCGCT GCTCCGGCCT 000160 000161 GACCTGCGAA GGGACCTCGG TCCAGTCCCC TGTTGCGCCG CGCCCCCTGT CCGTCCGTGC GCGGGCCAGT CAGGGGCCAG 000240 000241 TGTCTCGAGC GGTCGAGGTC GCAGACCTAG AGGCGCCCCA CAggccggcc cggggcgctg ggagcgccgg ccgcgggccg 000320 000321 ggTGGGGATG CCTCTGCACG TGAAGTGGCC GTTCCCCGCG GTGCCGCCGC TCACCTGGAC CCTGGCCAGC AGCGTCGTCA 000400 000401 TGGGCTTGGT GGGCACCTAC AGCTGCTTCT GGACCAAGTA CATGAACCAC CTGACCGTGC ACAACAGGGA GGTGCTGTAC 000480 000481 GAGCTCATCG AGAAGCGAGG CCCGGCCACG CCCCTCATCA CCGTGTCCAA TCACCAGTCC TGCATGGACG ACCCTCATCT 000560 000561 CTGGGGGATC CTGAAACTCC GCCACATCTG GAACCTGAAG TTGATGCGTT GGTGAGGAGG AATGGGCCCC TCGAAGTGGG 000640 000641 CCGGGCCGGC CCCACCTGCC TCTGCCCAGA TTTGCCCTCC TCCTGCTCTG CCCAGGAGGA CCCCTGCAGC TGCAGACATC 000720 000721 TGCTTCACCA AGGAGCTACA CTCCCACTTC TTCAGCTTGG GCAAGTGTGT GCCTGTGTGC CGAGGAGATG GCGTCTACCA 000800 000801 GAAGGGGATG GACTTCATTT TGGAGAAGCT CAACCATGGG GACTGGGTGC ATATCTTCCC AGAAGGTCAG CAGGGCTGAC 000880 000881 TGGGTCGAGC CCCCCCAGTA TGAGCGGGAT GGGCTCCCAA GCCTCGCCTC TGTGCTCTCT CACCAGGGAA AGTGAACATG 000960 000961 AGTTCCGAAT TCCTGCGTTT CAAGTGGGGT AAGGGCTGCT GGTCTCTGGC CACAGCCATC CTCCCGGCCC AGAGATGGCC 001040 001041 CTGTGGGCCC CTGGCTCCCG CCCCCTCGGG CTGGCTTGTA TGGGGGTAGA TGGGCGTGTT TGTAGCGCCA GGAAGGGGAC 001120 001121 AGGTGCTGAG ACTAGGCCTG CCTCTCGCAG GGGCTTGCCC AAGGGAGCTG AATTGAACTG GAGGATGTCG GGGGTGGCAG 001200 001201 TGGCCAGAGG CTGGCACAGA AGCTTGGCTC AGGGCCCAGC TTATGCTAAC ATTTCTACCT CCCCCCTGGG CAGGAATCGG 001280 001281 GCGCCTGATT GCTGAGTGTC ATCTCAACCC CATCATCCTG CCCCTGTGGC ATGTCGGAAT GAATGACGTC CTTCCTAACA 001360 001361 GTCCGCCCTA CTTCCCCCGC TTTGGACAGA AAATCACTGT GCTGATCGGG AAGCCCTTCA GTGCCCTGCC TGTACTCGAG 001440 001441 CGGCTCCGGG CGGAGAACAA GTCGGCTGTG GAGATGCGGA AAGCCCTGAC GGACTTCATT CAAGAGGAAT TCCAGCATCT 001520 001521 GAAGACTCAG GCAGAGCAGC TCCACAACCA CCTCCAGCCT GGGAGATAGG CCTTGCTTGC TGCCTTCTGG ATTCTTGGCC 001600 001601 CGCACAGAGC TGGGGCTGAG GGATGGACTG ATGCTTTTAG CTCAAACGTG GCTTTTAGAC AGATTTGTTC ATAGACCCTC 001680 001681 TCAAGTGCCC TCTCCGAGCT GGTAGGCATT CCAGCTCCTC CGTGCTTCCT CAGTTACACA AAGGACCTCA GCTGCTTCTC 001760 001761 CCACTTGGCC AAGCAGGGAG GAAGAAGCTT AGGCAGGGCT CTCTTTCCTT CTTGCCTTCA GATGTTCTCT CCCAGGGGCT 001840 001841 GGCTTCAGGA GGGAGCATAG AAGGCAGGTG AGCAACCAGT TGGCTAGGGG AGCAGGGGGC CCACCAGAGC TGTGGAGAGG 001920 001921 GGACCCTAAG ACTCCTCGGC CTGGCTCCTA CCCACCGCCC TTGCCGAACC AGGAGCTGCT CACTACCTCC TCAGGGATGG 002000 002001 CCGTTGGCCA CGTCTTCCTT CTGCCTGAGC TTCCCCCCGA CCACAGGCCC TTTCCTCAGG CAAGGTCTGG CCTCAGGTGG 002080 002081 GCCGCAGGCG GGAAAAGCAG CCCTTGGCCA GAAGTCAAGC CCAGCCACGT GGAGCCTAGA GTGAGGGCCT GAGGTCTGGC 002160 002161 TGCTTGCCCC CATGCTGGCG CCAACAACTT CTCCATCCTT TCTGCCTCTC AACATCACTT GAATC |
Predicted Small Protein
Name | NONHSAT139163_smProtein_1034:1294 |
Length | 87 |
Molecular weight | 9016.2736 |
Aromaticity | 0.046511627907 |
Instability index | 65.126744186 |
Isoelectric point | 11.3810424805 |
Runs | 11 |
Runs residual | 0.0117146824019 |
Runs probability | 0.0334104157634 |
Amino acid sequence | MALWAPGSRPLGLACMGVDGRVCSARKGTGAETRPASRRGLPKGAELNWRMSGVAVARGW HRSLAQGPAYANISTSPLGRNRAPDC |
Secondary structure | LLLLLLLLLLLLEEEELLLLEEELLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEEEEELL LHHHLLLLEEEEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |