Difference between revisions of "NONHSAT074811"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>ATGAGCCTGTGATGGTTGTCACATTCTTGATGACAGTATTCATTATTTTCTCTAAGGTGCACTCTGATCAGAATGCATACACATCTGTAAGTGTCCTTTTGGTGTATGCTTTGGAATGACTATTTTAGGAGAAATTTCCACCTCACCAAAACCTGGTGAGATTAGTGATGATCCCAAAGCATTTAAAACAAATTGAAAGGGTTATTCAGAAAGACCTGGATGGCTCCTATTCATCCAAAGAACACCATATAGTGAGAGAGTCCTTATGGCTCTCCAACAACTGAAAATGTGGAGAAACCAACTACCATTGATATAATTGCCTATAATAGGTGCACCTTTGAGACTGCAAGGCATAATTGGATAATATAATGTCAACAGAGGACTTCCTGTTGCCATATCAAGCAGAAATCTTCATTAAAAATATAAATGTGTAAGAAATATTGGCCAGAAAGGTTCTTGGAAACTTTGTCAGGGTGGAGAAAAATGTGCTGTGGCCAGAGGACTGAATGCCATAAACATCACATTGGCCCTAGATAGGGCAGCATGGTTCTGCTTCCTATTAATGGCCCAAAGGGGGACATTTTCATCAGGATTGGTGCCAATGTCCCATTTTCTTCTTGATTACAAGATGTTGAAAATCCATAGAATTCATTGAGATGCAGTCAAGAAATGGAGCCTGTAATAACATGTGCTAAAAAATTGTATATTCCGTTTTACATTGACTGGTGCAAAAATTCATTTGGTTGATAAAACAAAGCAAGTGGCCACCTATCCAGAAGTGATTCGTGGAGGGGGAATTTTAGTGATGATGGAGAGTACAAACTCTTTTCAAAATGACTGTCTGAAAAGCAGACAAGTACGTGGATTTCTTAATTATACTGGCTGTGTCCTCAGCAGTAGCTACTGGTCCTCTTTCTGGTACTTCCTTACATCATGCACTGTTGACAGAAAGGAGTAGAAAAGAGAAACATGCAAACATCAGACATCCAACTGGTCTGTCACAGTGCTATTCAGAAATTTGCCAAGGAGCTTCAAGACACATCCAAGAGTAGAAAGACAGCATGGCCCCCATCAACACTTCCTGTGTCTCACTTGTAACTGGTGAAATCATACCTTCCCTGTACACAGAGAACCATGATAGCACTAACACGCAAATGCAGCAGAATTTGTGACATCCAATTCAGGTTCCTCAACAACAAAGTACAAGTAAATGTCATCCCTGA</dnaseq>| | sequence = <dnaseq>ATGAGCCTGTGATGGTTGTCACATTCTTGATGACAGTATTCATTATTTTCTCTAAGGTGCACTCTGATCAGAATGCATACACATCTGTAAGTGTCCTTTTGGTGTATGCTTTGGAATGACTATTTTAGGAGAAATTTCCACCTCACCAAAACCTGGTGAGATTAGTGATGATCCCAAAGCATTTAAAACAAATTGAAAGGGTTATTCAGAAAGACCTGGATGGCTCCTATTCATCCAAAGAACACCATATAGTGAGAGAGTCCTTATGGCTCTCCAACAACTGAAAATGTGGAGAAACCAACTACCATTGATATAATTGCCTATAATAGGTGCACCTTTGAGACTGCAAGGCATAATTGGATAATATAATGTCAACAGAGGACTTCCTGTTGCCATATCAAGCAGAAATCTTCATTAAAAATATAAATGTGTAAGAAATATTGGCCAGAAAGGTTCTTGGAAACTTTGTCAGGGTGGAGAAAAATGTGCTGTGGCCAGAGGACTGAATGCCATAAACATCACATTGGCCCTAGATAGGGCAGCATGGTTCTGCTTCCTATTAATGGCCCAAAGGGGGACATTTTCATCAGGATTGGTGCCAATGTCCCATTTTCTTCTTGATTACAAGATGTTGAAAATCCATAGAATTCATTGAGATGCAGTCAAGAAATGGAGCCTGTAATAACATGTGCTAAAAAATTGTATATTCCGTTTTACATTGACTGGTGCAAAAATTCATTTGGTTGATAAAACAAAGCAAGTGGCCACCTATCCAGAAGTGATTCGTGGAGGGGGAATTTTAGTGATGATGGAGAGTACAAACTCTTTTCAAAATGACTGTCTGAAAAGCAGACAAGTACGTGGATTTCTTAATTATACTGGCTGTGTCCTCAGCAGTAGCTACTGGTCCTCTTTCTGGTACTTCCTTACATCATGCACTGTTGACAGAAAGGAGTAGAAAAGAGAAACATGCAAACATCAGACATCCAACTGGTCTGTCACAGTGCTATTCAGAAATTTGCCAAGGAGCTTCAAGACACATCCAAGAGTAGAAAGACAGCATGGCCCCCATCAACACTTCCTGTGTCTCACTTGTAACTGGTGAAATCATACCTTCCCTGTACACAGAGAACCATGATAGCACTAACACGCAAATGCAGCAGAATTTGTGACATCCAATTCAGGTTCCTCAACAACAAAGTACAAGTAAATGTCATCCCTGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG029472]] |
Revision as of 05:55, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT074811 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1223 nt |
| Genomic location |
chr2-:145512343..145513565 |
| Exon number |
1 |
| Exons |
145512343..145513565 |
| Genome context |
|
| Sequence |
000001 ATGAGCCTGT GATGGTTGTC ACATTCTTGA TGACAGTATT CATTATTTTC TCTAAGGTGC ACTCTGATCA GAATGCATAC 000080
000081 ACATCTGTAA GTGTCCTTTT GGTGTATGCT TTGGAATGAC TATTTTAGGA GAAATTTCCA CCTCACCAAA ACCTGGTGAG 000160 000161 ATTAGTGATG ATCCCAAAGC ATTTAAAACA AATTGAAAGG GTTATTCAGA AAGACCTGGA TGGCTCCTAT TCATCCAAAG 000240 000241 AACACCATAT AGTGAGAGAG TCCTTATGGC TCTCCAACAA CTGAAAATGT GGAGAAACCA ACTACCATTG ATATAATTGC 000320 000321 CTATAATAGG TGCACCTTTG AGACTGCAAG GCATAATTGG ATAATATAAT GTCAACAGAG GACTTCCTGT TGCCATATCA 000400 000401 AGCAGAAATC TTCATTAAAA ATATAAATGT GTAAGAAATA TTGGCCAGAA AGGTTCTTGG AAACTTTGTC AGGGTGGAGA 000480 000481 AAAATGTGCT GTGGCCAGAG GACTGAATGC CATAAACATC ACATTGGCCC TAGATAGGGC AGCATGGTTC TGCTTCCTAT 000560 000561 TAATGGCCCA AAGGGGGACA TTTTCATCAG GATTGGTGCC AATGTCCCAT TTTCTTCTTG ATTACAAGAT GTTGAAAATC 000640 000641 CATAGAATTC ATTGAGATGC AGTCAAGAAA TGGAGCCTGT AATAACATGT GCTAAAAAAT TGTATATTCC GTTTTACATT 000720 000721 GACTGGTGCA AAAATTCATT TGGTTGATAA AACAAAGCAA GTGGCCACCT ATCCAGAAGT GATTCGTGGA GGGGGAATTT 000800 000801 TAGTGATGAT GGAGAGTACA AACTCTTTTC AAAATGACTG TCTGAAAAGC AGACAAGTAC GTGGATTTCT TAATTATACT 000880 000881 GGCTGTGTCC TCAGCAGTAG CTACTGGTCC TCTTTCTGGT ACTTCCTTAC ATCATGCACT GTTGACAGAA AGGAGTAGAA 000960 000961 AAGAGAAACA TGCAAACATC AGACATCCAA CTGGTCTGTC ACAGTGCTAT TCAGAAATTT GCCAAGGAGC TTCAAGACAC 001040 001041 ATCCAAGAGT AGAAAGACAG CATGGCCCCC ATCAACACTT CCTGTGTCTC ACTTGTAACT GGTGAAATCA TACCTTCCCT 001120 001121 GTACACAGAG AACCATGATA GCACTAACAC GCAAATGCAG CAGAATTTGT GACATCCAAT TCAGGTTCCT CAACAACAAA 001200 001201 GTACAAGTAA ATGTCATCCC TGA |
Predicted Small Protein
| Name | NONHSAT074811_smProtein_167:283 |
| Length | 39 |
| Molecular weight | 4530.1291 |
| Aromaticity | 0.0526315789474 |
| Instability index | 51.4894736842 |
| Isoelectric point | 8.19915771484 |
| Runs | 7 |
| Runs residual | 0.0115997229917 |
| Runs probability | 0.0148888384183 |
| Amino acid sequence | MIPKHLKQIERVIQKDLDGSYSSKEHHIVRESLWLSNN |
| Secondary structure | LLHHHHHHHHHHHHHHLLLLLLLLLLEEEELLEEELLL |
| PRMN | - |
| PiMo | - |
