Difference between revisions of "NONHSAT139662"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>AGGCCCGCAGGCCTCTCCTGGAGTTGCCCCCAGAGTTGACGGGTGCCGGGGGGGTGGGGTGGGAGGCACAGGCTTTGCTCTGTTGGAGCCTCAAGGAGGGCACCATGTTAAGGCTGGAGGCTGTGCAGGAGAGGATGGTCTGTGCACAGAGCAGGAAGACAACCCTGGGGGGAGAGGCATGCTAGTGGGGGATGACATCATTGCAGAGATGGAGGTGGTGGCCAAGGAGGAAGGCCAATGTGGAGCCACAGCAGGAGGACCTGCAGGCACAGCCTGGCCCTGGCCCCAGTACGCCCCGGCCAGCAACAGACTCGCTGGACGTCCTTCACTTGGAGCTCGGCTACGTGAATGTCCCAGGCCACAGGGCATCCCCGGCTTCTGGGCCATTGTGCGGCACACCGAGATGTTGGCCGGGATCACAAATGATGATGAAGTCCTGCTAAGCTACGTACGTGATGGATTTGCAGGTCTTTTATCACAGTCTCTACTTCCACAATGAAGTGATCATTCAGGAGTACTGCCTTGGCATCCTCGGTAAGGAGCGCCTCCCATTCCACTGCAGTCTAGTGGTTGTGGGATCATGAAGGTCAAGCCTCCAGCTGCAGGCCGTACAGCTCCTACCTGACCTTCTTCAGCTGGTTGGCTGACCATGACTGCCCAGGTTCTGGCAGGATTGCTGAGATCATCAGCCAGAGCCTGTAGCTCAATCCCCTGCAGTACTTC</dnaseq>| | sequence = <dnaseq>AGGCCCGCAGGCCTCTCCTGGAGTTGCCCCCAGAGTTGACGGGTGCCGGGGGGGTGGGGTGGGAGGCACAGGCTTTGCTCTGTTGGAGCCTCAAGGAGGGCACCATGTTAAGGCTGGAGGCTGTGCAGGAGAGGATGGTCTGTGCACAGAGCAGGAAGACAACCCTGGGGGGAGAGGCATGCTAGTGGGGGATGACATCATTGCAGAGATGGAGGTGGTGGCCAAGGAGGAAGGCCAATGTGGAGCCACAGCAGGAGGACCTGCAGGCACAGCCTGGCCCTGGCCCCAGTACGCCCCGGCCAGCAACAGACTCGCTGGACGTCCTTCACTTGGAGCTCGGCTACGTGAATGTCCCAGGCCACAGGGCATCCCCGGCTTCTGGGCCATTGTGCGGCACACCGAGATGTTGGCCGGGATCACAAATGATGATGAAGTCCTGCTAAGCTACGTACGTGATGGATTTGCAGGTCTTTTATCACAGTCTCTACTTCCACAATGAAGTGATCATTCAGGAGTACTGCCTTGGCATCCTCGGTAAGGAGCGCCTCCCATTCCACTGCAGTCTAGTGGTTGTGGGATCATGAAGGTCAAGCCTCCAGCTGCAGGCCGTACAGCTCCTACCTGACCTTCTTCAGCTGGTTGGCTGACCATGACTGCCCAGGTTCTGGCAGGATTGCTGAGATCATCAGCCAGAGCCTGTAGCTCAATCCCCTGCAGTACTTC</dnaseq>| | ||
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− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG055890]] |
Revision as of 06:08, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT139662 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
723 nt |
Genomic location |
chrY+:24041541..24043706 |
Exon number |
5 |
Exons |
24041541..24041925,24042923..24043007,24043252..24043330,24043416..24043547,24043665..24043706 |
Genome context |
|
Sequence |
000001 AGGCCCGCAG GCCTCTCCTG GAGTTGCCCC CAGAGTTGAC GGGTGCCGGG GGGGTGGGGT GGGAGGCACA GGCTTTGCTC 000080
000081 TGTTGGAGCC TCAAGGAGGG CACCATGTTA AGGCTGGAGG CTGTGCAGGA GAGGATGGTC TGTGCACAGA GCAGGAAGAC 000160 000161 AACCCTGGGG GGAGAGGCAT GCTAGTGGGG GATGACATCA TTGCAGAGAT GGAGGTGGTG GCCAAGGAGG AAGGCCAATG 000240 000241 TGGAGCCACA GCAGGAGGAC CTGCAGGCAC AGCCTGGCCC TGGCCCCAGT ACGCCCCGGC CAGCAACAGA CTCGCTGGAC 000320 000321 GTCCTTCACT TGGAGCTCGG CTACGTGAAT GTCCCAGGCC ACAGGGCATC CCCGGCTTCT GGGCCATTGT GCGGCACACC 000400 000401 GAGATGTTGG CCGGGATCAC AAATGATGAT GAAGTCCTGC TAAGCTACGT ACGTGATGGA TTTGCAGGTC TTTTATCACA 000480 000481 GTCTCTACTT CCACAATGAA GTGATCATTC AGGAGTACTG CCTTGGCATC CTCGGTAAGG AGCGCCTCCC ATTCCACTGC 000560 000561 AGTCTAGTGG TTGTGGGATC ATGAAGGTCA AGCCTCCAGC TGCAGGCCGT ACAGCTCCTA CCTGACCTTC TTCAGCTGGT 000640 000641 TGGCTGACCA TGACTGCCCA GGTTCTGGCA GGATTGCTGA GATCATCAGC CAGAGCCTGT AGCTCAATCC CCTGCAGTAC 000720 000721 TTC |
Predicted Small Protein
Name | NONHSAT139662_smProtein_191:442 |
Length | 84 |
Molecular weight | 9236.4634 |
Aromaticity | 0.0602409638554 |
Instability index | 74.8674698795 |
Isoelectric point | 9.09722900391 |
Runs | 9 |
Runs residual | 0.031593038822 |
Runs probability | 0.0215804039334 |
Amino acid sequence | MTSLQRWRWWPRRKANVEPQQEDLQAQPGPGPSTPRPATDSLDVLHLELGYVNVPGHRAS PASGPLCGTPRCWPGSQMMMKSC |
Secondary structure | LLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLLLLLLLLEEEEELEEELLLLLLL LLLLLLLLLLLLLLLLLEEEELL |
PRMN | - |
PiMo | - |