Difference between revisions of "NONHSAT140315"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>tctcaaactcctgacctcaagtcatctgcccctcccccccccaaccccctcagcctcccaaagtgctgggattacaggcaagagccaccatgcccagccGGTTTGATTTCTTTAAGTAGTTGTATTTCTATTTATTATTCTTATAGGAAAATACAGCCTTAGATTTGAAAAAAATGTCTGTGGCTTCTCTGGTAAATCTAATTCTGACGGTTAAAGTATTTCTACTTAGAAAGCGATATATTATAAACAGTATTCTTCACTCATCCAGGAGTTTATATGTCAGATGCTCTTCCTGGTTTCATGTTTACAGATAGACCCAGCCCCATTTCTCTATCACAAGCCAGCTTAGCAGCCTGTGGTGGCAGTATTTCAAGGAGATCGCTGGCCTGGAGCTGTGGAGCCAGAGCTTCTGGAAGAGGGAATGTTCTTAGAACTCCATGGATTTAAAAAGAAGATTTggccgggcatggtgcctcaggcctgcaatcccagtactttgggaggccaagTGCCTGGATCAAAGTGGAACAGCTGAAGCCATATCATGCTCATAAAGA</dnaseq>| | sequence = <dnaseq>tctcaaactcctgacctcaagtcatctgcccctcccccccccaaccccctcagcctcccaaagtgctgggattacaggcaagagccaccatgcccagccGGTTTGATTTCTTTAAGTAGTTGTATTTCTATTTATTATTCTTATAGGAAAATACAGCCTTAGATTTGAAAAAAATGTCTGTGGCTTCTCTGGTAAATCTAATTCTGACGGTTAAAGTATTTCTACTTAGAAAGCGATATATTATAAACAGTATTCTTCACTCATCCAGGAGTTTATATGTCAGATGCTCTTCCTGGTTTCATGTTTACAGATAGACCCAGCCCCATTTCTCTATCACAAGCCAGCTTAGCAGCCTGTGGTGGCAGTATTTCAAGGAGATCGCTGGCCTGGAGCTGTGGAGCCAGAGCTTCTGGAAGAGGGAATGTTCTTAGAACTCCATGGATTTAAAAAGAAGATTTggccgggcatggtgcctcaggcctgcaatcccagtactttgggaggccaagTGCCTGGATCAAAGTGGAACAGCTGAAGCCATATCATGCTCATAAAGA</dnaseq>| | ||
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| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG018471]] |
Revision as of 06:13, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT140315 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
557 nt |
| Genomic location |
chr16-:4882866..4893913 |
| Exon number |
2 |
| Exons |
4882866..4882913,4893405..4893913 |
| Genome context |
|
| Sequence |
000001 tctcaaactc ctgacctcaa gtcatctgcc cctccccccc ccaaccccct cagcctccca aagtgctggg attacaggca 000080
000081 agagccacca tgcccagccG GTTTGATTTC TTTAAGTAGT TGTATTTCTA TTTATTATTC TTATAGGAAA ATACAGCCTT 000160 000161 AGATTTGAAA AAAATGTCTG TGGCTTCTCT GGTAAATCTA ATTCTGACGG TTAAAGTATT TCTACTTAGA AAGCGATATA 000240 000241 TTATAAACAG TATTCTTCAC TCATCCAGGA GTTTATATGT CAGATGCTCT TCCTGGTTTC ATGTTTACAG ATAGACCCAG 000320 000321 CCCCATTTCT CTATCACAAG CCAGCTTAGC AGCCTGTGGT GGCAGTATTT CAAGGAGATC GCTGGCCTGG AGCTGTGGAG 000400 000401 CCAGAGCTTC TGGAAGAGGG AATGTTCTTA GAACTCCATG GATTTAAAAA GAAGATTTgg ccgggcatgg tgcctcaggc 000480 000481 ctgcaatccc agtactttgg gaggccaagT GCCTGGATCA AAGTGGAACA GCTGAAGCCA TATCATGCTC ATAAAGA |
Predicted Small Protein
| Name | NONHSAT140315_smProtein_173:313 |
| Length | 47 |
| Molecular weight | 5470.508 |
| Aromaticity | 0.130434782609 |
| Instability index | 51.6695652174 |
| Isoelectric point | 11.0051879883 |
| Runs | 5 |
| Runs residual | 0.05266563147 |
| Runs probability | 0.0183006535948 |
| Amino acid sequence | MSVASLVNLILTVKVFLLRKRYIINSILHSSRSLYVRCSSWFHVYR |
| Secondary structure | LLHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLEEEEEEEEEEEEEL |
| PRMN | LLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
| PiMo | ooooTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |
