Difference between revisions of "NONHSAT075554"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ATGGGATACAAAGTGGTCATATTTGACATTTCTGTTGTCAGAGCCTTGTGGGAAACTTGTGTCAAGAAGCACAAGTTTGGCAGAAGAAGGAGGCAGAAAGTCTTGAGAAGAGTGCATCAGAAAAGACAAAGGAGGAGTGGCCCCTTGAGGTCAAGTGCAGGAGGAAAGGCATCTCCTGGGCTGAGTACTGGCTGGGATAGTGGCTTCATAGACATTCATAGCATGCAGCTTCTGGAAAAGATAGAAAGGAAAGCTCTCACAAGGCAGAGTTCACTTCCCAAGGACAGAGGCAAATGGAGCAGTGTGTTTGTGTTTGGACTTTCTGGGGAGTACTGGACGGAGCTGCCAGATTTGTTAAAGGAGCAGACGCACCTGAGAGAATGGCATGTATGCGACACCCTGATTCAAATTACTCCCACATATATTGAGCTGTTTCAAGCGATGAGAATTCAGGATCTGCCAAAGAAACAAATCTCACATTTTCCAGCTAAACTCAGTTGTTTGAAGAACCTGAAATAACTCAATGTGAGTTTCAACTATCTGAAGAGCATTCCTCCAGAGCTGGGAGATTGTGAAATCTAGAGGGACTGGATTGTTCTGGAAATCTGGAATTCACAGAGCTGCCTTTTGAATTAAGTAATTGGAAGCCAGTTGCATTCGTAGATATCTCAGCAAACAAGTTTTCCAGTGTCCCAGTCTGTGTCCTGAGGATGTCTATTTGCAGTGGTTGGATATCAGCAACAATAACCTGACTGCCTTGCGGCAAGATACAGGCTGGAAGAGCCGCAGGGCTTTCTCTTGTATAGAAGCAAGTTGACCTACCTTCCTTACCCCATGCTTAACCTGAAGAAGCGCACCTTGTTAGTCGTCAATGGGGACCACTTGGTGGAGCTTTCAGCTGCTCTTTGTGACTCCTCCACACCTTTAAAATTTGTAAGCCTTATAAACAATCCCCTCATGAAAGCCTATATTGAAGATCTTAAGGAAAGAGAATCTGTCCCAAGCTATACCACCAAAGGGTCTTTTAGCCTTCAACTTTGA</dnaseq>| | sequence = <dnaseq>ATGGGATACAAAGTGGTCATATTTGACATTTCTGTTGTCAGAGCCTTGTGGGAAACTTGTGTCAAGAAGCACAAGTTTGGCAGAAGAAGGAGGCAGAAAGTCTTGAGAAGAGTGCATCAGAAAAGACAAAGGAGGAGTGGCCCCTTGAGGTCAAGTGCAGGAGGAAAGGCATCTCCTGGGCTGAGTACTGGCTGGGATAGTGGCTTCATAGACATTCATAGCATGCAGCTTCTGGAAAAGATAGAAAGGAAAGCTCTCACAAGGCAGAGTTCACTTCCCAAGGACAGAGGCAAATGGAGCAGTGTGTTTGTGTTTGGACTTTCTGGGGAGTACTGGACGGAGCTGCCAGATTTGTTAAAGGAGCAGACGCACCTGAGAGAATGGCATGTATGCGACACCCTGATTCAAATTACTCCCACATATATTGAGCTGTTTCAAGCGATGAGAATTCAGGATCTGCCAAAGAAACAAATCTCACATTTTCCAGCTAAACTCAGTTGTTTGAAGAACCTGAAATAACTCAATGTGAGTTTCAACTATCTGAAGAGCATTCCTCCAGAGCTGGGAGATTGTGAAATCTAGAGGGACTGGATTGTTCTGGAAATCTGGAATTCACAGAGCTGCCTTTTGAATTAAGTAATTGGAAGCCAGTTGCATTCGTAGATATCTCAGCAAACAAGTTTTCCAGTGTCCCAGTCTGTGTCCTGAGGATGTCTATTTGCAGTGGTTGGATATCAGCAACAATAACCTGACTGCCTTGCGGCAAGATACAGGCTGGAAGAGCCGCAGGGCTTTCTCTTGTATAGAAGCAAGTTGACCTACCTTCCTTACCCCATGCTTAACCTGAAGAAGCGCACCTTGTTAGTCGTCAATGGGGACCACTTGGTGGAGCTTTCAGCTGCTCTTTGTGACTCCTCCACACCTTTAAAATTTGTAAGCCTTATAAACAATCCCCTCATGAAAGCCTATATTGAAGATCTTAAGGAAAGAGAATCTGTCCCAAGCTATACCACCAAAGGGTCTTTTAGCCTTCAACTTTGA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG029860]] |
Revision as of 06:15, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT075554 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1041 nt |
| Genomic location |
chr2-:175164052..175165684 |
| Exon number |
2 |
| Exons |
175164052..175164135,175164728..175165684 |
| Genome context |
|
| Sequence |
000001 ATGGGATACA AAGTGGTCAT ATTTGACATT TCTGTTGTCA GAGCCTTGTG GGAAACTTGT GTCAAGAAGC ACAAGTTTGG 000080
000081 CAGAAGAAGG AGGCAGAAAG TCTTGAGAAG AGTGCATCAG AAAAGACAAA GGAGGAGTGG CCCCTTGAGG TCAAGTGCAG 000160 000161 GAGGAAAGGC ATCTCCTGGG CTGAGTACTG GCTGGGATAG TGGCTTCATA GACATTCATA GCATGCAGCT TCTGGAAAAG 000240 000241 ATAGAAAGGA AAGCTCTCAC AAGGCAGAGT TCACTTCCCA AGGACAGAGG CAAATGGAGC AGTGTGTTTG TGTTTGGACT 000320 000321 TTCTGGGGAG TACTGGACGG AGCTGCCAGA TTTGTTAAAG GAGCAGACGC ACCTGAGAGA ATGGCATGTA TGCGACACCC 000400 000401 TGATTCAAAT TACTCCCACA TATATTGAGC TGTTTCAAGC GATGAGAATT CAGGATCTGC CAAAGAAACA AATCTCACAT 000480 000481 TTTCCAGCTA AACTCAGTTG TTTGAAGAAC CTGAAATAAC TCAATGTGAG TTTCAACTAT CTGAAGAGCA TTCCTCCAGA 000560 000561 GCTGGGAGAT TGTGAAATCT AGAGGGACTG GATTGTTCTG GAAATCTGGA ATTCACAGAG CTGCCTTTTG AATTAAGTAA 000640 000641 TTGGAAGCCA GTTGCATTCG TAGATATCTC AGCAAACAAG TTTTCCAGTG TCCCAGTCTG TGTCCTGAGG ATGTCTATTT 000720 000721 GCAGTGGTTG GATATCAGCA ACAATAACCT GACTGCCTTG CGGCAAGATA CAGGCTGGAA GAGCCGCAGG GCTTTCTCTT 000800 000801 GTATAGAAGC AAGTTGACCT ACCTTCCTTA CCCCATGCTT AACCTGAAGA AGCGCACCTT GTTAGTCGTC AATGGGGACC 000880 000881 ACTTGGTGGA GCTTTCAGCT GCTCTTTGTG ACTCCTCCAC ACCTTTAAAA TTTGTAAGCC TTATAAACAA TCCCCTCATG 000960 000961 AAAGCCTATA TTGAAGATCT TAAGGAAAGA GAATCTGTCC CAAGCTATAC CACCAAAGGG TCTTTTAGCC TTCAACTTTG 001040 001041 A |
Predicted Small Protein
| Name | NONHSAT075554_smProtein_293:427 |
| Length | 45 |
| Molecular weight | 5049.7473 |
| Aromaticity | 0.136363636364 |
| Instability index | 40.8545454545 |
| Isoelectric point | 5.98358154297 |
| Runs | 6 |
| Runs residual | 0.0267379679144 |
| Runs probability | 0.0396425837602 |
| Amino acid sequence | MEQCVCVWTFWGVLDGAARFVKGADAPERMACMRHPDSNYSHIY |
| Secondary structure | LLEEEEEEEEHHHHHHHHHHHHLLLLHHHHHHLLLLLLLLLLLL |
| PRMN | - |
| PiMo | - |
