Difference between revisions of "ENST00000305709.5"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGCACTGACTGGGTCACTGGTGAAGTTCCCCGCAGGAACTGAGTCAGACCCCATCTCAGGGCCCTGCACAAGATAGGTACCTGCTCTAAGGCGTGGACCCTCGCCACAGCCCTGGCCCGTCTTGACGGGCGAGGGTTACTGTACTTGTCCCAACCGTACAGATGAGAAAGCTGAGACTCAGGGCCAGCAACCCGGGTCCCAGCGGAGCGCCCGGCACGCGCCAACACTTCAGCACCAGTCGCGGTGGCCACCACTGTGCGCGGAGATGGCTGCGACGCGTGCGCAGATCTCGATCCCAAACTCCCTCCTACCAGAATCTGGACCCGAATCCACCCATTGTCCGTTTTCCGCTGCCGCTGGAGAGAATCTCTGAGGTCCCCAGGAGAGCCTGCCTGCACGGAAGAGACGCCTCCTCGGTATGGCCGCCCCCGGAGAGGAGCGATTAAGTGCAGACCTCCATGTTGCTCTTGAGCCTGAGCGGCTTCAGGGAGCCATGTTTGTTACTGGCGGGCGCCGACCTCACTGAGCATGTGCAGCCCTGGCCGGGCGGCCTCAAAGTTCTGACATCACAGGGCGGTTCCTGAAGTGGACATAGTTGTAAGAGCTAGTTATTTTAGACAATGCCTCTGTGATCAGGGACTCTAATCTGGAAATAGGTAGTCGGAGAGGTCGGTGATGCAGTCTCTGGATCAGAGACCTGAGCTATATGGGGTTAGAGAGGGGCCCTGGGCAGGCGAGTCTCTGGGGAGTGTGGTGAGAATCCTTGTGTAAGATGCTGGGAGGAGGTGGGGTCAGGGCTGGGGTCCGTGGGCCGACGGGTTGGGGGATGGCCAGCGTCAGGGATCAGTAGTAGAGATTCTATGTGCCCTGATCGCCAGTGGAGGTTTTAAATACAGAGTATTCATGAGTTTAGCAATGTTATTCGCCTCTCATTATTTAAATAATTTGAAGTTTTCCCCAATAACTAGTGTCTTAGAAGTCATGAAAATTTCAGAAAATGACAGGTCTTCTGAGTTCATGATGGGAGTTGGGCAGCAGTCGCATACGAGCACCTGGAGAGTCCTTGCCAGTTCTTTGGGGATGGGGAGCTCTTAAGACTGCCCTGAGACCGCCCTTTGACCTCATTGTGGTCCTTTCTAGATTAAATGCTGTTTTCCATGACCGTCTCTGTTCTTCCCATACGCGAATGGCAGGCATTCAGATCTCCAAGAATAGAGGATTAGGAGAGACTCCACCACCTATGTCCTCACAGTTAATTATCGATTTGTGTCAGTTGCCCATTTTCTCACTTCCTGTTTGTGTGTCAAGGGGTATTAATAAATCTTTGCCTATTTAAAGATATTAGCCTTGGATTTTCAAATATTGCATATTTTGACATGTAAAAATTTGTTAGTTTTATTTTTTCAACCGATCTGACCTGTATAGTTGGGCTTGAGGAAGCTTCCTCATTCTACATGTTACTATGGATTTTCTAATATTAACACAGGGTTGTATTTTTTCCATATAACTTTCTATTGAATTTCTTTTTCCATATGATAGGTGGTGAAGGTTTAGCCCAGTAAAGCAGAGAGGTTAAGAGGTTAGATTGGGGGCTCTGGAGCCAGACCTGTGTAGATCTGAGTCCTGGCTCTGGCACTTGAAAGCCGTGTGACCTTGGTTAAGATACTTAGTCCCTCTCTGCCAAATGGAGAAATAAGGGCACCTACCCCATAGGGTAGTTGTGTGATTACACAAGTTAATACACTTCAATCAGTAGCAAGAAAGTGAATGTCAAGCTGTATTTGTTCAGGCAGCCATATGGTAGCCCCACGTCCTTAGTAAACTGAGGTATTGAAGTATCTTCTTTTTCTTTCAGAAAATATTTGTCAAGCACCTTCTGTGTTCAAAGAACTGTTCTAGAGCTTTACATGCTATGGAGGTCTAGAAATTCACATTATGGTGGCAGGTGACAGACAATACAAAGAGATAAAGCAATTTTATATAGTGATAAGCTAGGGAGGAGTGCTAAAAGGAGCCAAGGTGTAGTGGTGACTGGAAGGTGACCAGGGAAACCACTGTAGGGTTTCTAAGTGATGAGATCTGTGACAAATCCCTGTGGTCAGCAGCAGGCATTGGATATGTAACTTTATTCTGTCCCATTGATCTTGTAGTCAACCCTGGTCTGTTCTGTATTGTTTTAATTACATAATCTTTGTAATAATCTTTAATACCTGGTGGAGTGCTCTGTTTACTTATTTCTGCGTAATTAACCACCCCTAAGCTTAACTTACTCATGGTTCTGCAGGGTGACTGCTCTCCATGGTTCTAGGTGGTTCTGCATGGGGCCTCTCACATGTGCTACAGTCAAACATTAGCCGGGGCCACAGTCATCTGAAACTCACTTACATGGCTGACAATTGATGTTGGCTGTTGCCTGGAGAAGACATATGTGGCGTGGTGGAATGGAATGGTGACTAGATTCAAGAAAGAGCTTCCCAGGAGGAAGGCTACCAAGAGACCGAAGTAGAGGCTTCAGTTTCTTAAAAAAAAAAAAAAAAAAAA</dnaseq>| | sequence = <dnaseq>GGCACTGACTGGGTCACTGGTGAAGTTCCCCGCAGGAACTGAGTCAGACCCCATCTCAGGGCCCTGCACAAGATAGGTACCTGCTCTAAGGCGTGGACCCTCGCCACAGCCCTGGCCCGTCTTGACGGGCGAGGGTTACTGTACTTGTCCCAACCGTACAGATGAGAAAGCTGAGACTCAGGGCCAGCAACCCGGGTCCCAGCGGAGCGCCCGGCACGCGCCAACACTTCAGCACCAGTCGCGGTGGCCACCACTGTGCGCGGAGATGGCTGCGACGCGTGCGCAGATCTCGATCCCAAACTCCCTCCTACCAGAATCTGGACCCGAATCCACCCATTGTCCGTTTTCCGCTGCCGCTGGAGAGAATCTCTGAGGTCCCCAGGAGAGCCTGCCTGCACGGAAGAGACGCCTCCTCGGTATGGCCGCCCCCGGAGAGGAGCGATTAAGTGCAGACCTCCATGTTGCTCTTGAGCCTGAGCGGCTTCAGGGAGCCATGTTTGTTACTGGCGGGCGCCGACCTCACTGAGCATGTGCAGCCCTGGCCGGGCGGCCTCAAAGTTCTGACATCACAGGGCGGTTCCTGAAGTGGACATAGTTGTAAGAGCTAGTTATTTTAGACAATGCCTCTGTGATCAGGGACTCTAATCTGGAAATAGGTAGTCGGAGAGGTCGGTGATGCAGTCTCTGGATCAGAGACCTGAGCTATATGGGGTTAGAGAGGGGCCCTGGGCAGGCGAGTCTCTGGGGAGTGTGGTGAGAATCCTTGTGTAAGATGCTGGGAGGAGGTGGGGTCAGGGCTGGGGTCCGTGGGCCGACGGGTTGGGGGATGGCCAGCGTCAGGGATCAGTAGTAGAGATTCTATGTGCCCTGATCGCCAGTGGAGGTTTTAAATACAGAGTATTCATGAGTTTAGCAATGTTATTCGCCTCTCATTATTTAAATAATTTGAAGTTTTCCCCAATAACTAGTGTCTTAGAAGTCATGAAAATTTCAGAAAATGACAGGTCTTCTGAGTTCATGATGGGAGTTGGGCAGCAGTCGCATACGAGCACCTGGAGAGTCCTTGCCAGTTCTTTGGGGATGGGGAGCTCTTAAGACTGCCCTGAGACCGCCCTTTGACCTCATTGTGGTCCTTTCTAGATTAAATGCTGTTTTCCATGACCGTCTCTGTTCTTCCCATACGCGAATGGCAGGCATTCAGATCTCCAAGAATAGAGGATTAGGAGAGACTCCACCACCTATGTCCTCACAGTTAATTATCGATTTGTGTCAGTTGCCCATTTTCTCACTTCCTGTTTGTGTGTCAAGGGGTATTAATAAATCTTTGCCTATTTAAAGATATTAGCCTTGGATTTTCAAATATTGCATATTTTGACATGTAAAAATTTGTTAGTTTTATTTTTTCAACCGATCTGACCTGTATAGTTGGGCTTGAGGAAGCTTCCTCATTCTACATGTTACTATGGATTTTCTAATATTAACACAGGGTTGTATTTTTTCCATATAACTTTCTATTGAATTTCTTTTTCCATATGATAGGTGGTGAAGGTTTAGCCCAGTAAAGCAGAGAGGTTAAGAGGTTAGATTGGGGGCTCTGGAGCCAGACCTGTGTAGATCTGAGTCCTGGCTCTGGCACTTGAAAGCCGTGTGACCTTGGTTAAGATACTTAGTCCCTCTCTGCCAAATGGAGAAATAAGGGCACCTACCCCATAGGGTAGTTGTGTGATTACACAAGTTAATACACTTCAATCAGTAGCAAGAAAGTGAATGTCAAGCTGTATTTGTTCAGGCAGCCATATGGTAGCCCCACGTCCTTAGTAAACTGAGGTATTGAAGTATCTTCTTTTTCTTTCAGAAAATATTTGTCAAGCACCTTCTGTGTTCAAAGAACTGTTCTAGAGCTTTACATGCTATGGAGGTCTAGAAATTCACATTATGGTGGCAGGTGACAGACAATACAAAGAGATAAAGCAATTTTATATAGTGATAAGCTAGGGAGGAGTGCTAAAAGGAGCCAAGGTGTAGTGGTGACTGGAAGGTGACCAGGGAAACCACTGTAGGGTTTCTAAGTGATGAGATCTGTGACAAATCCCTGTGGTCAGCAGCAGGCATTGGATATGTAACTTTATTCTGTCCCATTGATCTTGTAGTCAACCCTGGTCTGTTCTGTATTGTTTTAATTACATAATCTTTGTAATAATCTTTAATACCTGGTGGAGTGCTCTGTTTACTTATTTCTGCGTAATTAACCACCCCTAAGCTTAACTTACTCATGGTTCTGCAGGGTGACTGCTCTCCATGGTTCTAGGTGGTTCTGCATGGGGCCTCTCACATGTGCTACAGTCAAACATTAGCCGGGGCCACAGTCATCTGAAACTCACTTACATGGCTGACAATTGATGTTGGCTGTTGCCTGGAGAAGACATATGTGGCGTGGTGGAATGGAATGGTGACTAGATTCAAGAAAGAGCTTCCCAGGAGGAAGGCTACCAAGAGACCGAAGTAGAGGCTTCAGTTTCTTAAAAAAAAAAAAAAAAAAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:ENSG00000170161.6]] |
Revision as of 06:22, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000305709.5 |
Source |
Gencode19 |
Same with |
NONHSAT131550 |
Classification |
intergenic |
Length |
2541 nt |
Genomic location |
chr9+:66553273..66555928 |
Exon number |
2 |
Exons |
66553273..66553558,66553674..66555928 |
Genome context |
|
Sequence |
000001 GGCACTGACT GGGTCACTGG TGAAGTTCCC CGCAGGAACT GAGTCAGACC CCATCTCAGG GCCCTGCACA AGATAGGTAC 000080
000081 CTGCTCTAAG GCGTGGACCC TCGCCACAGC CCTGGCCCGT CTTGACGGGC GAGGGTTACT GTACTTGTCC CAACCGTACA 000160 000161 GATGAGAAAG CTGAGACTCA GGGCCAGCAA CCCGGGTCCC AGCGGAGCGC CCGGCACGCG CCAACACTTC AGCACCAGTC 000240 000241 GCGGTGGCCA CCACTGTGCG CGGAGATGGC TGCGACGCGT GCGCAGATCT CGATCCCAAA CTCCCTCCTA CCAGAATCTG 000320 000321 GACCCGAATC CACCCATTGT CCGTTTTCCG CTGCCGCTGG AGAGAATCTC TGAGGTCCCC AGGAGAGCCT GCCTGCACGG 000400 000401 AAGAGACGCC TCCTCGGTAT GGCCGCCCCC GGAGAGGAGC GATTAAGTGC AGACCTCCAT GTTGCTCTTG AGCCTGAGCG 000480 000481 GCTTCAGGGA GCCATGTTTG TTACTGGCGG GCGCCGACCT CACTGAGCAT GTGCAGCCCT GGCCGGGCGG CCTCAAAGTT 000560 000561 CTGACATCAC AGGGCGGTTC CTGAAGTGGA CATAGTTGTA AGAGCTAGTT ATTTTAGACA ATGCCTCTGT GATCAGGGAC 000640 000641 TCTAATCTGG AAATAGGTAG TCGGAGAGGT CGGTGATGCA GTCTCTGGAT CAGAGACCTG AGCTATATGG GGTTAGAGAG 000720 000721 GGGCCCTGGG CAGGCGAGTC TCTGGGGAGT GTGGTGAGAA TCCTTGTGTA AGATGCTGGG AGGAGGTGGG GTCAGGGCTG 000800 000801 GGGTCCGTGG GCCGACGGGT TGGGGGATGG CCAGCGTCAG GGATCAGTAG TAGAGATTCT ATGTGCCCTG ATCGCCAGTG 000880 000881 GAGGTTTTAA ATACAGAGTA TTCATGAGTT TAGCAATGTT ATTCGCCTCT CATTATTTAA ATAATTTGAA GTTTTCCCCA 000960 000961 ATAACTAGTG TCTTAGAAGT CATGAAAATT TCAGAAAATG ACAGGTCTTC TGAGTTCATG ATGGGAGTTG GGCAGCAGTC 001040 001041 GCATACGAGC ACCTGGAGAG TCCTTGCCAG TTCTTTGGGG ATGGGGAGCT CTTAAGACTG CCCTGAGACC GCCCTTTGAC 001120 001121 CTCATTGTGG TCCTTTCTAG ATTAAATGCT GTTTTCCATG ACCGTCTCTG TTCTTCCCAT ACGCGAATGG CAGGCATTCA 001200 001201 GATCTCCAAG AATAGAGGAT TAGGAGAGAC TCCACCACCT ATGTCCTCAC AGTTAATTAT CGATTTGTGT CAGTTGCCCA 001280 001281 TTTTCTCACT TCCTGTTTGT GTGTCAAGGG GTATTAATAA ATCTTTGCCT ATTTAAAGAT ATTAGCCTTG GATTTTCAAA 001360 001361 TATTGCATAT TTTGACATGT AAAAATTTGT TAGTTTTATT TTTTCAACCG ATCTGACCTG TATAGTTGGG CTTGAGGAAG 001440 001441 CTTCCTCATT CTACATGTTA CTATGGATTT TCTAATATTA ACACAGGGTT GTATTTTTTC CATATAACTT TCTATTGAAT 001520 001521 TTCTTTTTCC ATATGATAGG TGGTGAAGGT TTAGCCCAGT AAAGCAGAGA GGTTAAGAGG TTAGATTGGG GGCTCTGGAG 001600 001601 CCAGACCTGT GTAGATCTGA GTCCTGGCTC TGGCACTTGA AAGCCGTGTG ACCTTGGTTA AGATACTTAG TCCCTCTCTG 001680 001681 CCAAATGGAG AAATAAGGGC ACCTACCCCA TAGGGTAGTT GTGTGATTAC ACAAGTTAAT ACACTTCAAT CAGTAGCAAG 001760 001761 AAAGTGAATG TCAAGCTGTA TTTGTTCAGG CAGCCATATG GTAGCCCCAC GTCCTTAGTA AACTGAGGTA TTGAAGTATC 001840 001841 TTCTTTTTCT TTCAGAAAAT ATTTGTCAAG CACCTTCTGT GTTCAAAGAA CTGTTCTAGA GCTTTACATG CTATGGAGGT 001920 001921 CTAGAAATTC ACATTATGGT GGCAGGTGAC AGACAATACA AAGAGATAAA GCAATTTTAT ATAGTGATAA GCTAGGGAGG 002000 002001 AGTGCTAAAA GGAGCCAAGG TGTAGTGGTG ACTGGAAGGT GACCAGGGAA ACCACTGTAG GGTTTCTAAG TGATGAGATC 002080 002081 TGTGACAAAT CCCTGTGGTC AGCAGCAGGC ATTGGATATG TAACTTTATT CTGTCCCATT GATCTTGTAG TCAACCCTGG 002160 002161 TCTGTTCTGT ATTGTTTTAA TTACATAATC TTTGTAATAA TCTTTAATAC CTGGTGGAGT GCTCTGTTTA CTTATTTCTG 002240 002241 CGTAATTAAC CACCCCTAAG CTTAACTTAC TCATGGTTCT GCAGGGTGAC TGCTCTCCAT GGTTCTAGGT GGTTCTGCAT 002320 002321 GGGGCCTCTC ACATGTGCTA CAGTCAAACA TTAGCCGGGG CCACAGTCAT CTGAAACTCA CTTACATGGC TGACAATTGA 002400 002401 TGTTGGCTGT TGCCTGGAGA AGACATATGT GGCGTGGTGG AATGGAATGG TGACTAGATT CAAGAAAGAG CTTCCCAGGA 002480 002481 GGAAGGCTAC CAAGAGACCG AAGTAGAGGC TTCAGTTTCT TAAAAAAAAA AAAAAAAAAA A |
Predicted Small Protein
Name | ENST00000305709.5_smProtein_161:445 |
Length | 95 |
Molecular weight | 10769.1087 |
Aromaticity | 0.0531914893617 |
Instability index | 93.5244680851 |
Isoelectric point | 11.9057006836 |
Runs | 13 |
Runs residual | 0.00948196114709 |
Runs probability | 0.0318848260025 |
Amino acid sequence | MRKLRLRASNPGPSGAPGTRQHFSTSRGGHHCARRWLRRVRRSRSQTPSYQNLDPNPPIV RFPLPLERISEVPRRACLHGRDASSVWPPPERSD |
Secondary structure | LLEEEEELLLLLLLLLLLLLLEEELLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLEE ELLLLHHHLLLLLLLLEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |