Difference between revisions of "NONHSAT119915"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GAGGGCCCATGCCAGAACCTGACCATGCTGGCACTCTGATTTTGGATTTCTAGTCTCTAGAACTGTGAATAAGTACGTTTCTATTGCGTAAGCCACCCAGTCTATGGTATTTTATTATGGCAGCCTGAGCTGACTAATATAGGCTTCTAGATTGGAAGGGGAAGGAAGTAAAGAGAGAGAATTGATAGGGATAAAGAAGAGGCATCAAGAGACTTGGGGTATCTGCTACTGAAGACATCAGCTCTCTATGACAAAACAGCACAGCATGTTTGGAGTAAGAGAAAGCTGAAGTCTCAACAAACAAATAGATTCTTAATGTTCTATACCACCGGACAAACTGCAGCCCTTTTATACATATGGAGTACTTTCTGGGCCAGTCCTGTGGCCCCTTTCAAATGTATGGTGTTGAAACGTAGTAAGTTTATGTTTTTAAGGTCTGCCCCTCCCTTCTTGCATTATATCATAAACTCTTCTCTTTTTTTTTTTTTTTGAGACGGAGTCCCGCTCTGTCACGCAGGCTGCCAGGCTGGCGTACAGTGGCGCAATCTCAGCTCGCTGCAACCTCCACCTCCTGGGTTCAAGCGATTTTCTTGCCTCTGCCTCCTGAGTAGCTGGGATTACTGGCACACACCACCATGCACAGGGAGATATGAGACATCAATCAATATATGTAAGATGTACATCAGTTTCGTCTGGAAAGATGGGACAACATGAAGCAGGGAGGGGGCTCCCTGGTGACAGTTCCTTGTTCAAAATGCCAAGAACCTGGATGACTCATAGTCAAGACCCTCCACCAGTAACATATATTGGCGAGCCAGCCAGGAGACCACTACAGGAAACACTCCATTTATTCCACCTGACTTCCCACTTGGCTGCATCCTCAACCATTGAAATGAATTTGACCCTGATAATCTAAGGAGGAAACATTTGATATTCTTTTGCAATAATACTTGGCCCCAGTATTGTTTGGAATCTGGAGTTTGCTGTTGAATGGGAAAGCAGGATGACGTTGCATGTATCCAGGCTTTGGTGCTGCTGTCCTAAGAAGGGTCAGGCCTAGTCAGCATATGGTGCTCTCCTTTGGTGCTATTTGGCTCCAGTGTCTTTGGAGTCTGAGGAGGTTTGGCCTTTAAAAATCAAACTGCCACCGGAACTGCTTTAAAAATGTTTGGTTCACAGCCTTCACTGGATTACCTATTGGAGCAAACAAAGTGTAACCATGTAAAACCTGTGAGCTTGTATTGATATCTCATGGCTAGAGTTCCAAGGTAAAAGCTATTGGATCTTCGTTTGTGTGTGTGTATACATGTCTAGATGTGTTTATTTGTATGTACACTTATTGTTATATGTTGTGTCAACCAAATCAGCTTATAAATAAAAAAGCACTCATAAATTAAATAAATAAGTCCAAGCAATTTTC</dnaseq>| | sequence = <dnaseq>GAGGGCCCATGCCAGAACCTGACCATGCTGGCACTCTGATTTTGGATTTCTAGTCTCTAGAACTGTGAATAAGTACGTTTCTATTGCGTAAGCCACCCAGTCTATGGTATTTTATTATGGCAGCCTGAGCTGACTAATATAGGCTTCTAGATTGGAAGGGGAAGGAAGTAAAGAGAGAGAATTGATAGGGATAAAGAAGAGGCATCAAGAGACTTGGGGTATCTGCTACTGAAGACATCAGCTCTCTATGACAAAACAGCACAGCATGTTTGGAGTAAGAGAAAGCTGAAGTCTCAACAAACAAATAGATTCTTAATGTTCTATACCACCGGACAAACTGCAGCCCTTTTATACATATGGAGTACTTTCTGGGCCAGTCCTGTGGCCCCTTTCAAATGTATGGTGTTGAAACGTAGTAAGTTTATGTTTTTAAGGTCTGCCCCTCCCTTCTTGCATTATATCATAAACTCTTCTCTTTTTTTTTTTTTTTGAGACGGAGTCCCGCTCTGTCACGCAGGCTGCCAGGCTGGCGTACAGTGGCGCAATCTCAGCTCGCTGCAACCTCCACCTCCTGGGTTCAAGCGATTTTCTTGCCTCTGCCTCCTGAGTAGCTGGGATTACTGGCACACACCACCATGCACAGGGAGATATGAGACATCAATCAATATATGTAAGATGTACATCAGTTTCGTCTGGAAAGATGGGACAACATGAAGCAGGGAGGGGGCTCCCTGGTGACAGTTCCTTGTTCAAAATGCCAAGAACCTGGATGACTCATAGTCAAGACCCTCCACCAGTAACATATATTGGCGAGCCAGCCAGGAGACCACTACAGGAAACACTCCATTTATTCCACCTGACTTCCCACTTGGCTGCATCCTCAACCATTGAAATGAATTTGACCCTGATAATCTAAGGAGGAAACATTTGATATTCTTTTGCAATAATACTTGGCCCCAGTATTGTTTGGAATCTGGAGTTTGCTGTTGAATGGGAAAGCAGGATGACGTTGCATGTATCCAGGCTTTGGTGCTGCTGTCCTAAGAAGGGTCAGGCCTAGTCAGCATATGGTGCTCTCCTTTGGTGCTATTTGGCTCCAGTGTCTTTGGAGTCTGAGGAGGTTTGGCCTTTAAAAATCAAACTGCCACCGGAACTGCTTTAAAAATGTTTGGTTCACAGCCTTCACTGGATTACCTATTGGAGCAAACAAAGTGTAACCATGTAAAACCTGTGAGCTTGTATTGATATCTCATGGCTAGAGTTCCAAGGTAAAAGCTATTGGATCTTCGTTTGTGTGTGTGTATACATGTCTAGATGTGTTTATTTGTATGTACACTTATTGTTATATGTTGTGTCAACCAAATCAGCTTATAAATAAAAAAGCACTCATAAATTAAATAAATAAGTCCAAGCAATTTTC</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG047260]] |
Revision as of 06:26, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT119915 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1420 nt |
| Genomic location |
chr7-:30617113..30625588 |
| Exon number |
4 |
| Exons |
30617113..30617707,30618847..30618930,30624327..30624424,30624946..30625588 |
| Genome context |
|
| Sequence |
000001 GAGGGCCCAT GCCAGAACCT GACCATGCTG GCACTCTGAT TTTGGATTTC TAGTCTCTAG AACTGTGAAT AAGTACGTTT 000080
000081 CTATTGCGTA AGCCACCCAG TCTATGGTAT TTTATTATGG CAGCCTGAGC TGACTAATAT AGGCTTCTAG ATTGGAAGGG 000160 000161 GAAGGAAGTA AAGAGAGAGA ATTGATAGGG ATAAAGAAGA GGCATCAAGA GACTTGGGGT ATCTGCTACT GAAGACATCA 000240 000241 GCTCTCTATG ACAAAACAGC ACAGCATGTT TGGAGTAAGA GAAAGCTGAA GTCTCAACAA ACAAATAGAT TCTTAATGTT 000320 000321 CTATACCACC GGACAAACTG CAGCCCTTTT ATACATATGG AGTACTTTCT GGGCCAGTCC TGTGGCCCCT TTCAAATGTA 000400 000401 TGGTGTTGAA ACGTAGTAAG TTTATGTTTT TAAGGTCTGC CCCTCCCTTC TTGCATTATA TCATAAACTC TTCTCTTTTT 000480 000481 TTTTTTTTTT GAGACGGAGT CCCGCTCTGT CACGCAGGCT GCCAGGCTGG CGTACAGTGG CGCAATCTCA GCTCGCTGCA 000560 000561 ACCTCCACCT CCTGGGTTCA AGCGATTTTC TTGCCTCTGC CTCCTGAGTA GCTGGGATTA CTGGCACACA CCACCATGCA 000640 000641 CAGGGAGATA TGAGACATCA ATCAATATAT GTAAGATGTA CATCAGTTTC GTCTGGAAAG ATGGGACAAC ATGAAGCAGG 000720 000721 GAGGGGGCTC CCTGGTGACA GTTCCTTGTT CAAAATGCCA AGAACCTGGA TGACTCATAG TCAAGACCCT CCACCAGTAA 000800 000801 CATATATTGG CGAGCCAGCC AGGAGACCAC TACAGGAAAC ACTCCATTTA TTCCACCTGA CTTCCCACTT GGCTGCATCC 000880 000881 TCAACCATTG AAATGAATTT GACCCTGATA ATCTAAGGAG GAAACATTTG ATATTCTTTT GCAATAATAC TTGGCCCCAG 000960 000961 TATTGTTTGG AATCTGGAGT TTGCTGTTGA ATGGGAAAGC AGGATGACGT TGCATGTATC CAGGCTTTGG TGCTGCTGTC 001040 001041 CTAAGAAGGG TCAGGCCTAG TCAGCATATG GTGCTCTCCT TTGGTGCTAT TTGGCTCCAG TGTCTTTGGA GTCTGAGGAG 001120 001121 GTTTGGCCTT TAAAAATCAA ACTGCCACCG GAACTGCTTT AAAAATGTTT GGTTCACAGC CTTCACTGGA TTACCTATTG 001200 001201 GAGCAAACAA AGTGTAACCA TGTAAAACCT GTGAGCTTGT ATTGATATCT CATGGCTAGA GTTCCAAGGT AAAAGCTATT 001280 001281 GGATCTTCGT TTGTGTGTGT GTATACATGT CTAGATGTGT TTATTTGTAT GTACACTTAT TGTTATATGT TGTGTCAACC 001360 001361 AAATCAGCTT ATAAATAAAA AAGCACTCAT AAATTAAATA AATAAGTCCA AGCAATTTTC |
Predicted Small Protein
| Name | NONHSAT119915_smProtein_1013:1132 |
| Length | 40 |
| Molecular weight | 4521.3882 |
| Aromaticity | 0.153846153846 |
| Instability index | 89.2923076923 |
| Isoelectric point | 11.8297729492 |
| Runs | 6 |
| Runs residual | 0.0148944193062 |
| Runs probability | 0.0320025908261 |
| Amino acid sequence | MYPGFGAAVLRRVRPSQHMVLSFGAIWLQCLWSLRRFGL |
| Secondary structure | LLLLLLLEEHHHLLLLHHHHHHHHHHHHHHHHHHHHLLL |
| PRMN | - |
| PiMo | - |
