Difference between revisions of "ENST00000474814.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TTTCTCCCCGCCGCATTCCCGGTGTCGACTTACTAGCTGCAAGCCTCTGCCTGCCTTCCTGCGCGCCGTTCCCCGCTAGTCGCTGCTGCTGGCGCGCACTCGCCGGGTTTTTCCTCCCACGGCCTCGAGATGGTGGTGAATGTGGCACGGAGGAGCCGGGCCTTCCAACCCGGTGGGCCCGAGCTCCGAAAGGCCCCCTCGGCAGTGAGAGGGGCGGGAGCCCGCGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGTGAGTGTTGCAGGCAGGCGGCCGGGTTTACGGAAGGGGTGGGGGTTTGGGAACCGGTCTCCTGGGGGATGCGGGGATGAATCCCTGGGCCTGAAGTGTCTTAATTCAGGGGGAGGCCGCATGCTGGTGTCAGGATGGCCTCCAGTTGAATCTGTGACATTTACCAGCTAGGTGATTTTGGGACTGGTGACTACGCGCGAGACCTCTGGAGGTCGCCCTGGTAGACACGGTTTTCAGAAGGACGGGTTTTAGGCATTCAGACCCTTGCGTGCATCCCAGCTTGTTGCTTTCAGCCTCGCTAAGTGACTAAGCGACCTTCAGGAAGTAACTTAATCGGTCTAAACCTCTTACCTGTAATAGGCGGATAAAACGGTCCCATCAAGACTGAGAAAAAGCACACCAGCTATTGGCACAGCGTGGGCAGTGGGGCCTACAGGATGACTGACTTAGTCTACAGAGATCCCGGCGTACTTAAGCAGGTAGTAATGATGGACAGGTGAGGCTTTAGGCGGCCGCCCTGGGATCTGAATTGCCCCTTGGCCCTTATCGAAGCTGCAGCTGCTTCCGCATAGCTGCTGTGGTCAAAAAGGAGCCCAGAGTGACAGTTTTCCTTGACGGTCGCCGTTCTGTTTGTTGTAACTGATCTGCAACATTTTGGGAAAATACAGTTCCATTGTACCTGCCACCTTTCAGCTGTAGCCAGAGACCTTTATCAAAATGGGCTTGTTTCCACAGAACAGCAGAACGGTTGGGGGTTTGCATGTACAGTTAACCAGCATAAGACTCGTACTGGGAAAATCCAGCTGGGATGTGACACAGCTTAACTGATAGCTTAAGGCATCAGTATTGGGACCAAAGGCTGGTCAGATTTGTATCATTCTGAGGACCAAATGATGGGAACAATAAAATTGTTCATGACAGTTGTTCTCATTTTGCTGTCCAGATGAAGACTCTTAAGATGACAGAAGGTGATTTTTCTGGTGATCGAGGACTTCCGGGGTAATGACAGTGATGAAATGCAGGGGACCTGGTTGCCCCCAAGTTTCCTGGCAGTGTGTGATACTGAGGAGGTGAGCTTGTTTCTGGAGCTGTGCTTTAAGGTAAAGTTGATCAGCTTAATCCTCCTGATCCCTTTCCCATCGGATCTGAACACTGGTCTTGGTGGTCGTAAAAGGAGGAAAAGTAATAGTGAAGCTGGCCTAAATGTTGTAATCTGGTATATGGCATGTGGGCTAGTTTCAGACAGGTTTCAGAGATGGTTGGATCTCTGAAATTGTAAAATGAAGTATAATCTTAGGCTAAGGGAAGGATGCGTGTGAAGCTCTGGAGGTTGGTATAGTAATAGCTGACCTATTACTGCATTTGGGAGGGATCTGTCATAGCTTCCTTGCCTCTTAATTAAGGGTGGTGTTTTTTTCTTTTAGATTCATGTTACATGTAAAGCTGTCCTCATTTGTGACTATGGACCTATGGAGTTGGGACAATCTCTATGGGAAGCAGAAGGCAAGGACCCCGGTCATTTTAGGTAGAAACAACAGCATGCTAATGCAAAAAATTATGCAGTGTGCTACTGAACTTCAGAGGTGATCAATAAAAGAAGAATAAAAAGACTAATAAAAGT</dnaseq>| | sequence = <dnaseq>TTTCTCCCCGCCGCATTCCCGGTGTCGACTTACTAGCTGCAAGCCTCTGCCTGCCTTCCTGCGCGCCGTTCCCCGCTAGTCGCTGCTGCTGGCGCGCACTCGCCGGGTTTTTCCTCCCACGGCCTCGAGATGGTGGTGAATGTGGCACGGAGGAGCCGGGCCTTCCAACCCGGTGGGCCCGAGCTCCGAAAGGCCCCCTCGGCAGTGAGAGGGGCGGGAGCCCGCGGGGGCCGCGCCCTTCTCTCGCTTCGGACTGCGCAACGCTGCGCTCTGGGCTGACAGGTGAGTGTTGCAGGCAGGCGGCCGGGTTTACGGAAGGGGTGGGGGTTTGGGAACCGGTCTCCTGGGGGATGCGGGGATGAATCCCTGGGCCTGAAGTGTCTTAATTCAGGGGGAGGCCGCATGCTGGTGTCAGGATGGCCTCCAGTTGAATCTGTGACATTTACCAGCTAGGTGATTTTGGGACTGGTGACTACGCGCGAGACCTCTGGAGGTCGCCCTGGTAGACACGGTTTTCAGAAGGACGGGTTTTAGGCATTCAGACCCTTGCGTGCATCCCAGCTTGTTGCTTTCAGCCTCGCTAAGTGACTAAGCGACCTTCAGGAAGTAACTTAATCGGTCTAAACCTCTTACCTGTAATAGGCGGATAAAACGGTCCCATCAAGACTGAGAAAAAGCACACCAGCTATTGGCACAGCGTGGGCAGTGGGGCCTACAGGATGACTGACTTAGTCTACAGAGATCCCGGCGTACTTAAGCAGGTAGTAATGATGGACAGGTGAGGCTTTAGGCGGCCGCCCTGGGATCTGAATTGCCCCTTGGCCCTTATCGAAGCTGCAGCTGCTTCCGCATAGCTGCTGTGGTCAAAAAGGAGCCCAGAGTGACAGTTTTCCTTGACGGTCGCCGTTCTGTTTGTTGTAACTGATCTGCAACATTTTGGGAAAATACAGTTCCATTGTACCTGCCACCTTTCAGCTGTAGCCAGAGACCTTTATCAAAATGGGCTTGTTTCCACAGAACAGCAGAACGGTTGGGGGTTTGCATGTACAGTTAACCAGCATAAGACTCGTACTGGGAAAATCCAGCTGGGATGTGACACAGCTTAACTGATAGCTTAAGGCATCAGTATTGGGACCAAAGGCTGGTCAGATTTGTATCATTCTGAGGACCAAATGATGGGAACAATAAAATTGTTCATGACAGTTGTTCTCATTTTGCTGTCCAGATGAAGACTCTTAAGATGACAGAAGGTGATTTTTCTGGTGATCGAGGACTTCCGGGGTAATGACAGTGATGAAATGCAGGGGACCTGGTTGCCCCCAAGTTTCCTGGCAGTGTGTGATACTGAGGAGGTGAGCTTGTTTCTGGAGCTGTGCTTTAAGGTAAAGTTGATCAGCTTAATCCTCCTGATCCCTTTCCCATCGGATCTGAACACTGGTCTTGGTGGTCGTAAAAGGAGGAAAAGTAATAGTGAAGCTGGCCTAAATGTTGTAATCTGGTATATGGCATGTGGGCTAGTTTCAGACAGGTTTCAGAGATGGTTGGATCTCTGAAATTGTAAAATGAAGTATAATCTTAGGCTAAGGGAAGGATGCGTGTGAAGCTCTGGAGGTTGGTATAGTAATAGCTGACCTATTACTGCATTTGGGAGGGATCTGTCATAGCTTCCTTGCCTCTTAATTAAGGGTGGTGTTTTTTTCTTTTAGATTCATGTTACATGTAAAGCTGTCCTCATTTGTGACTATGGACCTATGGAGTTGGGACAATCTCTATGGGAAGCAGAAGGCAAGGACCCCGGTCATTTTAGGTAGAAACAACAGCATGCTAATGCAAAAAATTATGCAGTGTGCTACTGAACTTCAGAGGTGATCAATAAAAGAAGAATAAAAAGACTAATAAAAGT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:lnc-TAF12-1]] |
Revision as of 06:47, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000474814.1 |
Source |
Gencode19 |
Same with |
lnc-TAF12-1:3,NONHSAT001972 |
Classification |
intergenic |
Length |
1903 nt |
Genomic location |
chr1-:28905051..28908383 |
Exon number |
3 |
Exons |
28905051..28905192,28906045..28906493,28907072..28908383 |
Genome context |
|
Sequence |
000001 TTTCTCCCCG CCGCATTCCC GGTGTCGACT TACTAGCTGC AAGCCTCTGC CTGCCTTCCT GCGCGCCGTT CCCCGCTAGT 000080
000081 CGCTGCTGCT GGCGCGCACT CGCCGGGTTT TTCCTCCCAC GGCCTCGAGA TGGTGGTGAA TGTGGCACGG AGGAGCCGGG 000160 000161 CCTTCCAACC CGGTGGGCCC GAGCTCCGAA AGGCCCCCTC GGCAGTGAGA GGGGCGGGAG CCCGCGGGGG CCGCGCCCTT 000240 000241 CTCTCGCTTC GGACTGCGCA ACGCTGCGCT CTGGGCTGAC AGGTGAGTGT TGCAGGCAGG CGGCCGGGTT TACGGAAGGG 000320 000321 GTGGGGGTTT GGGAACCGGT CTCCTGGGGG ATGCGGGGAT GAATCCCTGG GCCTGAAGTG TCTTAATTCA GGGGGAGGCC 000400 000401 GCATGCTGGT GTCAGGATGG CCTCCAGTTG AATCTGTGAC ATTTACCAGC TAGGTGATTT TGGGACTGGT GACTACGCGC 000480 000481 GAGACCTCTG GAGGTCGCCC TGGTAGACAC GGTTTTCAGA AGGACGGGTT TTAGGCATTC AGACCCTTGC GTGCATCCCA 000560 000561 GCTTGTTGCT TTCAGCCTCG CTAAGTGACT AAGCGACCTT CAGGAAGTAA CTTAATCGGT CTAAACCTCT TACCTGTAAT 000640 000641 AGGCGGATAA AACGGTCCCA TCAAGACTGA GAAAAAGCAC ACCAGCTATT GGCACAGCGT GGGCAGTGGG GCCTACAGGA 000720 000721 TGACTGACTT AGTCTACAGA GATCCCGGCG TACTTAAGCA GGTAGTAATG ATGGACAGGT GAGGCTTTAG GCGGCCGCCC 000800 000801 TGGGATCTGA ATTGCCCCTT GGCCCTTATC GAAGCTGCAG CTGCTTCCGC ATAGCTGCTG TGGTCAAAAA GGAGCCCAGA 000880 000881 GTGACAGTTT TCCTTGACGG TCGCCGTTCT GTTTGTTGTA ACTGATCTGC AACATTTTGG GAAAATACAG TTCCATTGTA 000960 000961 CCTGCCACCT TTCAGCTGTA GCCAGAGACC TTTATCAAAA TGGGCTTGTT TCCACAGAAC AGCAGAACGG TTGGGGGTTT 001040 001041 GCATGTACAG TTAACCAGCA TAAGACTCGT ACTGGGAAAA TCCAGCTGGG ATGTGACACA GCTTAACTGA TAGCTTAAGG 001120 001121 CATCAGTATT GGGACCAAAG GCTGGTCAGA TTTGTATCAT TCTGAGGACC AAATGATGGG AACAATAAAA TTGTTCATGA 001200 001201 CAGTTGTTCT CATTTTGCTG TCCAGATGAA GACTCTTAAG ATGACAGAAG GTGATTTTTC TGGTGATCGA GGACTTCCGG 001280 001281 GGTAATGACA GTGATGAAAT GCAGGGGACC TGGTTGCCCC CAAGTTTCCT GGCAGTGTGT GATACTGAGG AGGTGAGCTT 001360 001361 GTTTCTGGAG CTGTGCTTTA AGGTAAAGTT GATCAGCTTA ATCCTCCTGA TCCCTTTCCC ATCGGATCTG AACACTGGTC 001440 001441 TTGGTGGTCG TAAAAGGAGG AAAAGTAATA GTGAAGCTGG CCTAAATGTT GTAATCTGGT ATATGGCATG TGGGCTAGTT 001520 001521 TCAGACAGGT TTCAGAGATG GTTGGATCTC TGAAATTGTA AAATGAAGTA TAATCTTAGG CTAAGGGAAG GATGCGTGTG 001600 001601 AAGCTCTGGA GGTTGGTATA GTAATAGCTG ACCTATTACT GCATTTGGGA GGGATCTGTC ATAGCTTCCT TGCCTCTTAA 001680 001681 TTAAGGGTGG TGTTTTTTTC TTTTAGATTC ATGTTACATG TAAAGCTGTC CTCATTTGTG ACTATGGACC TATGGAGTTG 001760 001761 GGACAATCTC TATGGGAAGC AGAAGGCAAG GACCCCGGTC ATTTTAGGTA GAAACAACAG CATGCTAATG CAAAAAATTA 001840 001841 TGCAGTGTGC TACTGAACTT CAGAGGTGAT CAATAAAAGA AGAATAAAAA GACTAATAAA AGT |
Predicted Small Protein
Name | ENST00000474814.1_smProtein_1298:1552 |
Length | 85 |
Molecular weight | 9518.1329 |
Aromaticity | 0.107142857143 |
Instability index | 57.6452380952 |
Isoelectric point | 7.70172119141 |
Runs | 13 |
Runs residual | 0.0207764634516 |
Runs probability | 0.0697416873887 |
Amino acid sequence | MQGTWLPPSFLAVCDTEEVSLFLELCFKVKLISLILLIPFPSDLNTGLGGRKRRKSNSEA GLNVVIWYMACGLVSDRFQRWLDL |
Secondary structure | LLLLLLLLLEEEELLLHHHHHHHHHHHHHLEEEEEEEELLLLLLLLLLLLLEELLLLLLL LLEEEEEELLLLLHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiii |