Difference between revisions of "NONHSAT053404"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>gttattatccttgttcaaaagaaatgataatgaagacacagagaggttagataatttgcacaaggtcacacagctagtaagtggcagagcatagatttcaacccaggcagccagatttcagatcccaaactcttaaccCTCCGATGCCCTTTGTGAATTCCTTAATAGCACTTATGTAGTGGCACAGATATCAGAGAGAACTTCTCTTATGATCCTTATTAGACATTTGGGGCAACTTTTACATGATTTTGGAAAACTACCCAGATGGTGTCAAGAACATGAATGCCTTACTCATAATGATTCCAACTCCCACCCAACCTCTTCCTGTATTGGATAAGTGGACCCAAAGGCTCTGTCGGCTTTCATCTCTGAGACTTTGTTAGAACCCAAGACCCCATGGTTCGACCTTCCCTGCTCCCCTGCAGCCCCTGTCTGCCCTAATGATCTCTCCACAGGCCTTCAGAACAACCTGTCCCCCAAGACAAAGGGCACTCCTGTGCACCTGGGCACCATCGTGGGCATCGTGCTGGCAGTCCTCCTCGTGGCGGCCATCATCCTGGCTGGAATTTACATCAATGGCCACCCCACATCCAATGCTGCGCTCTTCTTCATCGAGCGTAGACCTCACCACTGGCCAGCCATGAAGTTTCGCAG</dnaseq>| | sequence = <dnaseq>gttattatccttgttcaaaagaaatgataatgaagacacagagaggttagataatttgcacaaggtcacacagctagtaagtggcagagcatagatttcaacccaggcagccagatttcagatcccaaactcttaaccCTCCGATGCCCTTTGTGAATTCCTTAATAGCACTTATGTAGTGGCACAGATATCAGAGAGAACTTCTCTTATGATCCTTATTAGACATTTGGGGCAACTTTTACATGATTTTGGAAAACTACCCAGATGGTGTCAAGAACATGAATGCCTTACTCATAATGATTCCAACTCCCACCCAACCTCTTCCTGTATTGGATAAGTGGACCCAAAGGCTCTGTCGGCTTTCATCTCTGAGACTTTGTTAGAACCCAAGACCCCATGGTTCGACCTTCCCTGCTCCCCTGCAGCCCCTGTCTGCCCTAATGATCTCTCCACAGGCCTTCAGAACAACCTGTCCCCCAAGACAAAGGGCACTCCTGTGCACCTGGGCACCATCGTGGGCATCGTGCTGGCAGTCCTCCTCGTGGCGGCCATCATCCTGGCTGGAATTTACATCAATGGCCACCCCACATCCAATGCTGCGCTCTTCTTCATCGAGCGTAGACCTCACCACTGGCCAGCCATGAAGTTTCGCAG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intronic(S)]] | + | [[Category:Intronic(S)]][[Category:NONHSAG021685]] |
Revision as of 06:50, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT053404 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intronic(S) |
| Length |
654 nt |
| Genomic location |
chr17-:37224175..37226724 |
| Exon number |
2 |
| Exons |
37224175..37224212,37226109..37226724 |
| Genome context |
|
| Sequence |
000001 gttattatcc ttgttcaaaa gaaatgataa tgaagacaca gagaggttag ataatttgca caaggtcaca cagctagtaa 000080
000081 gtggcagagc atagatttca acccaggcag ccagatttca gatcccaaac tcttaaccCT CCGATGCCCT TTGTGAATTC 000160 000161 CTTAATAGCA CTTATGTAGT GGCACAGATA TCAGAGAGAA CTTCTCTTAT GATCCTTATT AGACATTTGG GGCAACTTTT 000240 000241 ACATGATTTT GGAAAACTAC CCAGATGGTG TCAAGAACAT GAATGCCTTA CTCATAATGA TTCCAACTCC CACCCAACCT 000320 000321 CTTCCTGTAT TGGATAAGTG GACCCAAAGG CTCTGTCGGC TTTCATCTCT GAGACTTTGT TAGAACCCAA GACCCCATGG 000400 000401 TTCGACCTTC CCTGCTCCCC TGCAGCCCCT GTCTGCCCTA ATGATCTCTC CACAGGCCTT CAGAACAACC TGTCCCCCAA 000480 000481 GACAAAGGGC ACTCCTGTGC ACCTGGGCAC CATCGTGGGC ATCGTGCTGG CAGTCCTCCT CGTGGCGGCC ATCATCCTGG 000560 000561 CTGGAATTTA CATCAATGGC CACCCCACAT CCAATGCTGC GCTCTTCTTC ATCGAGCGTA GACCTCACCA CTGGCCAGCC 000640 000641 ATGAAGTTTC GCAG |
Predicted Small Protein
| Name | NONHSAT053404_smProtein_440:643 |
| Length | 68 |
| Molecular weight | 7515.4636 |
| Aromaticity | 0.10447761194 |
| Instability index | 82.4223880597 |
| Isoelectric point | 9.29815673828 |
| Runs | 10 |
| Runs residual | 0.0059388919278 |
| Runs probability | 0.0445680975092 |
| Amino acid sequence | MISPQAFRTTCPPRQRALLCTWAPSWASCWQSSSWRPSSWLEFTSMATPHPMLRSSSSSV DLTTGQP |
| Secondary structure | LLLLLLLLLLLLHHHHHHLLLLLLLHHHHLLLLLLLLLLHHHEELLLLLLLLLLLLLLLE ELLLLLL |
| PRMN | - |
| PiMo | - |
