Difference between revisions of "NONHSAT077455"

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(Created page with "Please input one-sentence summary here. ==Annotated Information== ===Transcriptomic Nomeclature=== Please input transcriptomic nomeclature information here. ===Functio...")
 
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sequence = <dnaseq>GGGAAATGTGAGGGCTAGTGCAGCGCTGAGCCCAGACCCCTCACACAGCGCTACCGGCAACTTGCTTAACCTAGAGGTGGGGGGTGACGTCCCTGTCGGCCCCGTCACCTGGGGCCCCAGCACCTCTCCTTGGCTTTGCAGACGATGTTCCACAGGAGCCCGTGCCCACGCTGTGGAACGAGCCGGCCGAGCTGCCGTCGGGAGAAGGCCCCGTGGAGAGCACCAGCCCCGGCCGGGAGCCCGTGGACACCGGTCCCCCAGCCCCCACCGTCGCGCCAGGACCCGAGGACAGCACCGCgcaggagcggctggaccagggcggcgGGTCGCTGGGGCCCGGCGCTATCGCGGCCATCGTGATCGCCGCCCTGCTGGCCACCTGCGTGGTGCTGGCGCTCGTGGTCGTCGCGCTGAGAAAGTTTTCTGCCTCCTGAAGCGAATAAAggggccgcgcccggccgcggcgcgACTCGGCTGCACTCCTcacgcgcctgtatgtccgcgcgtgcgtgtccgcgcatgcaggtgtgccagagcgtgagcgcgcgcaggcgagcgctcagggcgggggtgcgcgcggggccgagggtgggtgccgtgcacgcgcgcgggtccggaggcgcgcccgAATTCCCCGCAGGGGCGCCGGGGCGTGCGTGAGCGCACAGCATGTCCGAGCCCGCCTGCGTGTGGCGTGCACCTGAGCGCGCGCAGGGCCGCGCGGCTCGGCGTCCCCGTGCACCACGGCTGGAGTGCCTCAGGAGCGCGCCGCATGTGCGTGCCCGGTGCGCGTGCGCCGGGGCCGCCAGGGCATCGGAGCGGGTGTGCGGCCAGCGGTCTTAGCCCGTCCGGGGGCACCGTCACGGTCAGGGCCACGCCACGGGCGGCCCCTTCTCCCGGCGCCGCCTCCTCTGCCTGGGCGCGGGCCGAGGCCCTCGCCGCGCTCCCCGGGGCCTGCCTCCCATCCCGCTCCGCTGGGGTTCAGAGCGTTCCGTGAGGAGGTAAGCGCTAGGGCAGGAGAGGCCGACAGAGACCCCGGGGCCCGCCGCTCCTTGAGGCCGGGGTTGGGGAGGGCAGGGGCCGTCGGCTCTCCCAGCCAGAGGCCGCGTGGTTTTGGGGGACGTCTTGACTCTGAGTCCTGCAGCCAGGGCCCCATCCGCGGGCTCAGACCAGCAGCCCCAAGCCCCCCTCTGCCCAGGGAGCCTCAGGAGCAGGATGAGTCGAGAGTCGACGCCGGACACGGCCCGCCCCTGCTTCCTACTCTCACCCCCAGGCCTGGCTGGGGGCCGGCAGCCCCCACGCCCACGGTTGGTTTGTTCAGGGAGAGAAAACGGCTTTCCCAGCTCTACTCACCTCACTTCACCCTCAGAGAGTCGGGGCGGAGTGAGGGTGAGGAGCCTGGTCCAGGGTCCCCACCTCGGAAGCATTTAGAGATGTAAACTTTGATCCTTTGATCATTTAACCTGCTCAGCACAGCAGGAAGTGGGAACTTGGTCCCTACCCCAGTCCCCAGGGCCTTTGGAGGGAAGGGTTGGACAGTTTGGAGGCCAGCAGACCCCTTGGGGACAGCTTAATGTATCTGAAGATTCCTGAGTGGGAATGTTGCTGGAGGGCAAGCTGCTTCTCTTTTTTAAAAATTCATTTTCTCTAGCAGCTGTTTTGGCCCCTTTGGTGTCCCTGAGCTCCCCATGGCACTGTTTCCTGCCGTGACTTTCTCCTCCTGGACACTGGAGCCCAGGTGGTGCCCGCGCACCTCTCACACACTGGGGGATAGGGTCAAGGCCTCATCCAAGTCTGTTAACAGCTTCCCACTCAACCAGTCTCCCCAAAATACACTGTGAGTTCAATGATTCTGCTTATAAAGGAGTGCTATGAAACTGACCTATTTTCCTAATTGGTTAACTGACTTCATCTCACATAACCTTGAGTAACCAAAGCCTTCATCAGAGCGGACGATCCAACCCAACATGCTGTTTCCCATCCTCAAAAGGCACGGGGACCAATGGCCACCCAACTCCTTCCCAACCCTCCCCTCCAGGGACGAGAGATGGCCCCCTCTTTCCCTTTCCCCACTCTGCAAGCACTCCCCCACCAACGGGTGCATCACAGCCCCTCACTGGGACCAGGGGGCCTCCCTCTCCGGTGGAACCAGTGTCACATGCCTGTGCATCTCTGTGATTCTCAGAGGGTCTGAGGTCCGAGCACCCTGCTGTGGCCTGTGGGAAGACGCTACAAAGTCCCACTGGATCTAAACCAGAGGCCTGTTCTGGCGAGCAGGGAAACTGTGTCCTGGCAGAGATCGTGGTCCTGGGCACACAGGACCCCTCAGCACACTGAGGTGGAGCTGGGGCGAGGGGAGGGGGTGCGCTCTGGGTAACTGAAGGTGTGAAGGGCCCAGGGCCTGTTTCTGGGCAGTGCAGGAAGTCCCAGCCCCATGCCTGTGGTGAGATCCCCTGTAGGGCCCCCCCCACCATGGACACTTCGGGGCCTCTACGGTCTTCCAAAGCTGTGTCCTCATTTCCACTGCAGCAGAGGGGCGTCCCCAGCTCCGTCAAACAGCCCTTTCTGTTTCTGGAGTCCTACAAGTGGAGGCCCAAATCCGTTCCCATGTTGAGGCAAGGCCCTGGCTGTTCCTTCCTCTCTGGAAACCGCCTTGAACTCTTCCTTTGGGACATGCCTCCTCGACCAGCCTTGAAGGGGTGCTCCTCTCTCACTACCTGGAACCAAACACCCCCTTCCTTTGTGTACAAGGGCAATAAAGAGTAgaccttcatcttcttta</dnaseq>|
 
sequence = <dnaseq>GGGAAATGTGAGGGCTAGTGCAGCGCTGAGCCCAGACCCCTCACACAGCGCTACCGGCAACTTGCTTAACCTAGAGGTGGGGGGTGACGTCCCTGTCGGCCCCGTCACCTGGGGCCCCAGCACCTCTCCTTGGCTTTGCAGACGATGTTCCACAGGAGCCCGTGCCCACGCTGTGGAACGAGCCGGCCGAGCTGCCGTCGGGAGAAGGCCCCGTGGAGAGCACCAGCCCCGGCCGGGAGCCCGTGGACACCGGTCCCCCAGCCCCCACCGTCGCGCCAGGACCCGAGGACAGCACCGCgcaggagcggctggaccagggcggcgGGTCGCTGGGGCCCGGCGCTATCGCGGCCATCGTGATCGCCGCCCTGCTGGCCACCTGCGTGGTGCTGGCGCTCGTGGTCGTCGCGCTGAGAAAGTTTTCTGCCTCCTGAAGCGAATAAAggggccgcgcccggccgcggcgcgACTCGGCTGCACTCCTcacgcgcctgtatgtccgcgcgtgcgtgtccgcgcatgcaggtgtgccagagcgtgagcgcgcgcaggcgagcgctcagggcgggggtgcgcgcggggccgagggtgggtgccgtgcacgcgcgcgggtccggaggcgcgcccgAATTCCCCGCAGGGGCGCCGGGGCGTGCGTGAGCGCACAGCATGTCCGAGCCCGCCTGCGTGTGGCGTGCACCTGAGCGCGCGCAGGGCCGCGCGGCTCGGCGTCCCCGTGCACCACGGCTGGAGTGCCTCAGGAGCGCGCCGCATGTGCGTGCCCGGTGCGCGTGCGCCGGGGCCGCCAGGGCATCGGAGCGGGTGTGCGGCCAGCGGTCTTAGCCCGTCCGGGGGCACCGTCACGGTCAGGGCCACGCCACGGGCGGCCCCTTCTCCCGGCGCCGCCTCCTCTGCCTGGGCGCGGGCCGAGGCCCTCGCCGCGCTCCCCGGGGCCTGCCTCCCATCCCGCTCCGCTGGGGTTCAGAGCGTTCCGTGAGGAGGTAAGCGCTAGGGCAGGAGAGGCCGACAGAGACCCCGGGGCCCGCCGCTCCTTGAGGCCGGGGTTGGGGAGGGCAGGGGCCGTCGGCTCTCCCAGCCAGAGGCCGCGTGGTTTTGGGGGACGTCTTGACTCTGAGTCCTGCAGCCAGGGCCCCATCCGCGGGCTCAGACCAGCAGCCCCAAGCCCCCCTCTGCCCAGGGAGCCTCAGGAGCAGGATGAGTCGAGAGTCGACGCCGGACACGGCCCGCCCCTGCTTCCTACTCTCACCCCCAGGCCTGGCTGGGGGCCGGCAGCCCCCACGCCCACGGTTGGTTTGTTCAGGGAGAGAAAACGGCTTTCCCAGCTCTACTCACCTCACTTCACCCTCAGAGAGTCGGGGCGGAGTGAGGGTGAGGAGCCTGGTCCAGGGTCCCCACCTCGGAAGCATTTAGAGATGTAAACTTTGATCCTTTGATCATTTAACCTGCTCAGCACAGCAGGAAGTGGGAACTTGGTCCCTACCCCAGTCCCCAGGGCCTTTGGAGGGAAGGGTTGGACAGTTTGGAGGCCAGCAGACCCCTTGGGGACAGCTTAATGTATCTGAAGATTCCTGAGTGGGAATGTTGCTGGAGGGCAAGCTGCTTCTCTTTTTTAAAAATTCATTTTCTCTAGCAGCTGTTTTGGCCCCTTTGGTGTCCCTGAGCTCCCCATGGCACTGTTTCCTGCCGTGACTTTCTCCTCCTGGACACTGGAGCCCAGGTGGTGCCCGCGCACCTCTCACACACTGGGGGATAGGGTCAAGGCCTCATCCAAGTCTGTTAACAGCTTCCCACTCAACCAGTCTCCCCAAAATACACTGTGAGTTCAATGATTCTGCTTATAAAGGAGTGCTATGAAACTGACCTATTTTCCTAATTGGTTAACTGACTTCATCTCACATAACCTTGAGTAACCAAAGCCTTCATCAGAGCGGACGATCCAACCCAACATGCTGTTTCCCATCCTCAAAAGGCACGGGGACCAATGGCCACCCAACTCCTTCCCAACCCTCCCCTCCAGGGACGAGAGATGGCCCCCTCTTTCCCTTTCCCCACTCTGCAAGCACTCCCCCACCAACGGGTGCATCACAGCCCCTCACTGGGACCAGGGGGCCTCCCTCTCCGGTGGAACCAGTGTCACATGCCTGTGCATCTCTGTGATTCTCAGAGGGTCTGAGGTCCGAGCACCCTGCTGTGGCCTGTGGGAAGACGCTACAAAGTCCCACTGGATCTAAACCAGAGGCCTGTTCTGGCGAGCAGGGAAACTGTGTCCTGGCAGAGATCGTGGTCCTGGGCACACAGGACCCCTCAGCACACTGAGGTGGAGCTGGGGCGAGGGGAGGGGGTGCGCTCTGGGTAACTGAAGGTGTGAAGGGCCCAGGGCCTGTTTCTGGGCAGTGCAGGAAGTCCCAGCCCCATGCCTGTGGTGAGATCCCCTGTAGGGCCCCCCCCACCATGGACACTTCGGGGCCTCTACGGTCTTCCAAAGCTGTGTCCTCATTTCCACTGCAGCAGAGGGGCGTCCCCAGCTCCGTCAAACAGCCCTTTCTGTTTCTGGAGTCCTACAAGTGGAGGCCCAAATCCGTTCCCATGTTGAGGCAAGGCCCTGGCTGTTCCTTCCTCTCTGGAAACCGCCTTGAACTCTTCCTTTGGGACATGCCTCCTCGACCAGCCTTGAAGGGGTGCTCCTCTCTCACTACCTGGAACCAAACACCCCCTTCCTTTGTGTACAAGGGCAATAAAGAGTAgaccttcatcttcttta</dnaseq>|
 
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[[Category:Sense]]
+
[[Category:Sense]][[Category:NONHSAG030806]]

Revision as of 07:08, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT077455

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2782 nt

Genomic location

chr2+:233740509..233743414

Exon number

2

Exons

233740509..233740832,233740957..233743414

Genome context

Sequence
000001 GGGAAATGTG AGGGCTAGTG CAGCGCTGAG CCCAGACCCC TCACACAGCG CTACCGGCAA CTTGCTTAAC CTAGAGGTGG 000080
000081 GGGGTGACGT CCCTGTCGGC CCCGTCACCT GGGGCCCCAG CACCTCTCCT TGGCTTTGCA GACGATGTTC CACAGGAGCC 000160
000161 CGTGCCCACG CTGTGGAACG AGCCGGCCGA GCTGCCGTCG GGAGAAGGCC CCGTGGAGAG CACCAGCCCC GGCCGGGAGC 000240
000241 CCGTGGACAC CGGTCCCCCA GCCCCCACCG TCGCGCCAGG ACCCGAGGAC AGCACCGCgc aggagcggct ggaccagggc 000320
000321 ggcgGGTCGC TGGGGCCCGG CGCTATCGCG GCCATCGTGA TCGCCGCCCT GCTGGCCACC TGCGTGGTGC TGGCGCTCGT 000400
000401 GGTCGTCGCG CTGAGAAAGT TTTCTGCCTC CTGAAGCGAA TAAAggggcc gcgcccggcc gcggcgcgAC TCGGCTGCAC 000480
000481 TCCTcacgcg cctgtatgtc cgcgcgtgcg tgtccgcgca tgcaggtgtg ccagagcgtg agcgcgcgca ggcgagcgct 000560
000561 cagggcgggg gtgcgcgcgg ggccgagggt gggtgccgtg cacgcgcgcg ggtccggagg cgcgcccgAA TTCCCCGCAG 000640
000641 GGGCGCCGGG GCGTGCGTGA GCGCACAGCA TGTCCGAGCC CGCCTGCGTG TGGCGTGCAC CTGAGCGCGC GCAGGGCCGC 000720
000721 GCGGCTCGGC GTCCCCGTGC ACCACGGCTG GAGTGCCTCA GGAGCGCGCC GCATGTGCGT GCCCGGTGCG CGTGCGCCGG 000800
000801 GGCCGCCAGG GCATCGGAGC GGGTGTGCGG CCAGCGGTCT TAGCCCGTCC GGGGGCACCG TCACGGTCAG GGCCACGCCA 000880
000881 CGGGCGGCCC CTTCTCCCGG CGCCGCCTCC TCTGCCTGGG CGCGGGCCGA GGCCCTCGCC GCGCTCCCCG GGGCCTGCCT 000960
000961 CCCATCCCGC TCCGCTGGGG TTCAGAGCGT TCCGTGAGGA GGTAAGCGCT AGGGCAGGAG AGGCCGACAG AGACCCCGGG 001040
001041 GCCCGCCGCT CCTTGAGGCC GGGGTTGGGG AGGGCAGGGG CCGTCGGCTC TCCCAGCCAG AGGCCGCGTG GTTTTGGGGG 001120
001121 ACGTCTTGAC TCTGAGTCCT GCAGCCAGGG CCCCATCCGC GGGCTCAGAC CAGCAGCCCC AAGCCCCCCT CTGCCCAGGG 001200
001201 AGCCTCAGGA GCAGGATGAG TCGAGAGTCG ACGCCGGACA CGGCCCGCCC CTGCTTCCTA CTCTCACCCC CAGGCCTGGC 001280
001281 TGGGGGCCGG CAGCCCCCAC GCCCACGGTT GGTTTGTTCA GGGAGAGAAA ACGGCTTTCC CAGCTCTACT CACCTCACTT 001360
001361 CACCCTCAGA GAGTCGGGGC GGAGTGAGGG TGAGGAGCCT GGTCCAGGGT CCCCACCTCG GAAGCATTTA GAGATGTAAA 001440
001441 CTTTGATCCT TTGATCATTT AACCTGCTCA GCACAGCAGG AAGTGGGAAC TTGGTCCCTA CCCCAGTCCC CAGGGCCTTT 001520
001521 GGAGGGAAGG GTTGGACAGT TTGGAGGCCA GCAGACCCCT TGGGGACAGC TTAATGTATC TGAAGATTCC TGAGTGGGAA 001600
001601 TGTTGCTGGA GGGCAAGCTG CTTCTCTTTT TTAAAAATTC ATTTTCTCTA GCAGCTGTTT TGGCCCCTTT GGTGTCCCTG 001680
001681 AGCTCCCCAT GGCACTGTTT CCTGCCGTGA CTTTCTCCTC CTGGACACTG GAGCCCAGGT GGTGCCCGCG CACCTCTCAC 001760
001761 ACACTGGGGG ATAGGGTCAA GGCCTCATCC AAGTCTGTTA ACAGCTTCCC ACTCAACCAG TCTCCCCAAA ATACACTGTG 001840
001841 AGTTCAATGA TTCTGCTTAT AAAGGAGTGC TATGAAACTG ACCTATTTTC CTAATTGGTT AACTGACTTC ATCTCACATA 001920
001921 ACCTTGAGTA ACCAAAGCCT TCATCAGAGC GGACGATCCA ACCCAACATG CTGTTTCCCA TCCTCAAAAG GCACGGGGAC 002000
002001 CAATGGCCAC CCAACTCCTT CCCAACCCTC CCCTCCAGGG ACGAGAGATG GCCCCCTCTT TCCCTTTCCC CACTCTGCAA 002080
002081 GCACTCCCCC ACCAACGGGT GCATCACAGC CCCTCACTGG GACCAGGGGG CCTCCCTCTC CGGTGGAACC AGTGTCACAT 002160
002161 GCCTGTGCAT CTCTGTGATT CTCAGAGGGT CTGAGGTCCG AGCACCCTGC TGTGGCCTGT GGGAAGACGC TACAAAGTCC 002240
002241 CACTGGATCT AAACCAGAGG CCTGTTCTGG CGAGCAGGGA AACTGTGTCC TGGCAGAGAT CGTGGTCCTG GGCACACAGG 002320
002321 ACCCCTCAGC ACACTGAGGT GGAGCTGGGG CGAGGGGAGG GGGTGCGCTC TGGGTAACTG AAGGTGTGAA GGGCCCAGGG 002400
002401 CCTGTTTCTG GGCAGTGCAG GAAGTCCCAG CCCCATGCCT GTGGTGAGAT CCCCTGTAGG GCCCCCCCCA CCATGGACAC 002480
002481 TTCGGGGCCT CTACGGTCTT CCAAAGCTGT GTCCTCATTT CCACTGCAGC AGAGGGGCGT CCCCAGCTCC GTCAAACAGC 002560
002561 CCTTTCTGTT TCTGGAGTCC TACAAGTGGA GGCCCAAATC CGTTCCCATG TTGAGGCAAG GCCCTGGCTG TTCCTTCCTC 002640
002641 TCTGGAAACC GCCTTGAACT CTTCCTTTGG GACATGCCTC CTCGACCAGC CTTGAAGGGG TGCTCCTCTC TCACTACCTG 002720
002721 GAACCAAACA CCCCCTTCCT TTGTGTACAA GGGCAATAAA GAGTAgacct tcatcttctt ta
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Predicted Small Protein

Name NONHSAT077455_smProtein_1967:2251
Length 95
Molecular weight 10350.7922
Aromaticity 0.0744680851064
Instability index 55.1872340426
Isoelectric point 7.64959716797
Runs 11
Runs residual 0.0117946345976
Runs probability 0.0223779929662
Amino acid sequence MLFPILKRHGDQWPPNSFPTLPSRDERWPPLSLSPLCKHSPTNGCITAPHWDQGASLSGG
TSVTCLCISVILRGSEVRAPCCGLWEDATKSHWI
Secondary structure LLLLHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLLLLLLLLL
LEEEEEEEEEEEELLEEELLLLLLHHHHHHLLLL
PRMN -
PiMo -