Difference between revisions of "NONHSAT077773"

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sequence = <dnaseq>AACGTTCCATCTGGCCGGGTGGGCATAGAAGGGGGTGGAGGGAGCGCCTGGGTATTGTCAGGTGAGGAAGGTCAGAGGGAGCCGTCCACCCACGTGGCCAGCGAAACGGAGCGTGGGAGGAGGCCCACGAACACCTGAGATCAAAACCCACAGGGCACGTGAGAAGATCCCAATTCCAGGGCGCGAACGAAGTCCAGGAGCTTCAAAATTGGCCCGCATCATGAAAACATCCGGCAGACGATTGAAGACTCACTCTTGATGCAGACGCTGACCCGAGGAAGGAAAAGGGTGAGAAACAGCTAGGCAGACACAGCAGAGCGGGAAAGAGGCCGACGCCGACGGAATGCAGGAGGCTTGGGGGTCGGGCCCAGGAGATCTGATCTGAGAGTAACAAGTTACAGGAGCGCGGAAAATCACAGATGGAGGAAGGGCAGTCATTACATATCGGAACTCTCCCCTGAGTTGGGGGACGCCTGCAGAGTAGGCATGGAAGGGCTCACGGAGTTCTAGGTTCAGCTGATGAGAAAAGATGCCCTCTGTGCTATGTCATGGTAACAGCCTCCGAACTCTGCATACACACTGTATTCTTCCCTTTGTGTGACACTCCAGAAACAACAAATTGCATCCATAGTGATGGAAATCAGACCAGTCGTTGTCAGGGGCCACCGAGTTGACTGGGATAGTGATGGAAATTTTAATGAATACATAGATGTATAAACATGTCAAAACATGTACTTTTTAAAATGGATCCATTTTATTGTATACAAATTTTACTAAATAAAATGGAATGGAAAATTATAAGTGCTGTACTTTCTGCATTGAGGAAAAAGAAAAGTCAACCATTTTTCAGTCAAAAGGAATATGTTACCTAAAAAAGCAAAACAATCAGAATGGTCTCAGGCTTCTCATCTACAACACTGCAAGCTAAAAGCAGTGGAAGAGCAAAAGACTGCACCCCAGGAACCCCTGTTCTCAATAAAGAGATTGTCGAAGTGTTAGGAGCAGAAGGTATTTGAAGATACATAAAACCTCAGTGAGTTTATCACCTAAGTGCCTCATCTAGGAAAGCACTGGAGAAACAGTTCTAATGAAATGGCAAACCCAGAAACGACATAGCAGAGACCTCCGGATGAAGGAGGATGGAGAGGAAGGACGCAGTGGCATGAGGAAGCTTCATCTACTCGGAGGCATCCCGAGGGGCTCAGCCGTTCGGAGCAGCGGAGGGGCACAAACGCTGCAGGGTGGCTGGGTGTGGTCTTCACAGGGGACGGCAGAAGCATAAGAGAAACTGAGGCTGCGGGGTGAGTAGGAACCTGGCTGCAGTGAGTTATGGGTTGAGAGAGACAGTGAGTGTGTGTTTGGTGCACATAAGTAATTGTCTTTTTTTTTTTTTTTTGTCTCACTCTGCCACCCAGGTTGGAGTGCAATGGTGCAATCTCGGTTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCTCACCACCATGCCCAGCTAATTTTTTTTTTTTCAGTAGCGACAGGGTTTCAAATCCTCTTAAGGGCACATTGATAAGTCTGGTTGAAAATAGGATTTGATTCATCCAAAGCAGGAAGAAGTGACTGCTATGAAGGTGAAGGCACAGCCATGAAAGATTGATCATTCTGCAACTCAGGAGGGTCTGTCTAGGGCCCAGGAGCCCGTGTTTTCCTTATTAACCAAAAATAATTAAGAAAGGCGATGATTCCGTCTGCACCCTGAGCTCTGCACGTTGATTTGGTGATGAACGGAGCACCATTGCCATGAGGACAATTGCCAGTCCTTTCCCGACTGGAAGATGGCAACAGCCCTGCCCCATTTCCCCGCCGTATTTATACTGGACTTTAGAGAACTGTGAAAGCCCATCTGGAAAACACTCAAGGCAGGTGAGTGCCCCTCACAAACCCTGTGGAGAACACCATCCTTCCCTCCACCATCATCACCAGCAACAAACGTTTGCTCAACCCACGGTGTGCAAGGCAGAGGGCCCGGTGCTGCAGGGACAGAAAGAGGAATGAGGGACAAATGAACATGATGGAAGGGAAGGGAAGGATGTCTGTGTTCTCCAGGGATTTGCCATCCACCTGGGTGCTGGTCTGATGTCCCTGAGTCACTGAAGCAATGCCAGCAGCATTTTTATGGGCAGAAAGATCAATGCCCGTAAATAGCAGGGCATCCTCCCTGTCAAATAAAGGTGACCTAAGATTCTACCAGTTCGGGCTGAGCTCTGAGTCACCTATTTATTCAAGTTATAATTACTGAGCTCCACTGCAGAGGCTGCTGGACACACCCCTATTTCCTAGAAATGGAACTCTTTCTAGCACCGTGCATGGCTGACTGGAATAAAACTATACCTCCCAAAAAAAAAAAAAAAA</dnaseq>|
 
sequence = <dnaseq>AACGTTCCATCTGGCCGGGTGGGCATAGAAGGGGGTGGAGGGAGCGCCTGGGTATTGTCAGGTGAGGAAGGTCAGAGGGAGCCGTCCACCCACGTGGCCAGCGAAACGGAGCGTGGGAGGAGGCCCACGAACACCTGAGATCAAAACCCACAGGGCACGTGAGAAGATCCCAATTCCAGGGCGCGAACGAAGTCCAGGAGCTTCAAAATTGGCCCGCATCATGAAAACATCCGGCAGACGATTGAAGACTCACTCTTGATGCAGACGCTGACCCGAGGAAGGAAAAGGGTGAGAAACAGCTAGGCAGACACAGCAGAGCGGGAAAGAGGCCGACGCCGACGGAATGCAGGAGGCTTGGGGGTCGGGCCCAGGAGATCTGATCTGAGAGTAACAAGTTACAGGAGCGCGGAAAATCACAGATGGAGGAAGGGCAGTCATTACATATCGGAACTCTCCCCTGAGTTGGGGGACGCCTGCAGAGTAGGCATGGAAGGGCTCACGGAGTTCTAGGTTCAGCTGATGAGAAAAGATGCCCTCTGTGCTATGTCATGGTAACAGCCTCCGAACTCTGCATACACACTGTATTCTTCCCTTTGTGTGACACTCCAGAAACAACAAATTGCATCCATAGTGATGGAAATCAGACCAGTCGTTGTCAGGGGCCACCGAGTTGACTGGGATAGTGATGGAAATTTTAATGAATACATAGATGTATAAACATGTCAAAACATGTACTTTTTAAAATGGATCCATTTTATTGTATACAAATTTTACTAAATAAAATGGAATGGAAAATTATAAGTGCTGTACTTTCTGCATTGAGGAAAAAGAAAAGTCAACCATTTTTCAGTCAAAAGGAATATGTTACCTAAAAAAGCAAAACAATCAGAATGGTCTCAGGCTTCTCATCTACAACACTGCAAGCTAAAAGCAGTGGAAGAGCAAAAGACTGCACCCCAGGAACCCCTGTTCTCAATAAAGAGATTGTCGAAGTGTTAGGAGCAGAAGGTATTTGAAGATACATAAAACCTCAGTGAGTTTATCACCTAAGTGCCTCATCTAGGAAAGCACTGGAGAAACAGTTCTAATGAAATGGCAAACCCAGAAACGACATAGCAGAGACCTCCGGATGAAGGAGGATGGAGAGGAAGGACGCAGTGGCATGAGGAAGCTTCATCTACTCGGAGGCATCCCGAGGGGCTCAGCCGTTCGGAGCAGCGGAGGGGCACAAACGCTGCAGGGTGGCTGGGTGTGGTCTTCACAGGGGACGGCAGAAGCATAAGAGAAACTGAGGCTGCGGGGTGAGTAGGAACCTGGCTGCAGTGAGTTATGGGTTGAGAGAGACAGTGAGTGTGTGTTTGGTGCACATAAGTAATTGTCTTTTTTTTTTTTTTTTGTCTCACTCTGCCACCCAGGTTGGAGTGCAATGGTGCAATCTCGGTTCACTGCAACCTCCACCTCCCGGGTTCAAGCAATTCTTCCTGTCTCAGCCTCCTGAGTAGCTGGGATTACAGGTGCTCACCACCATGCCCAGCTAATTTTTTTTTTTTCAGTAGCGACAGGGTTTCAAATCCTCTTAAGGGCACATTGATAAGTCTGGTTGAAAATAGGATTTGATTCATCCAAAGCAGGAAGAAGTGACTGCTATGAAGGTGAAGGCACAGCCATGAAAGATTGATCATTCTGCAACTCAGGAGGGTCTGTCTAGGGCCCAGGAGCCCGTGTTTTCCTTATTAACCAAAAATAATTAAGAAAGGCGATGATTCCGTCTGCACCCTGAGCTCTGCACGTTGATTTGGTGATGAACGGAGCACCATTGCCATGAGGACAATTGCCAGTCCTTTCCCGACTGGAAGATGGCAACAGCCCTGCCCCATTTCCCCGCCGTATTTATACTGGACTTTAGAGAACTGTGAAAGCCCATCTGGAAAACACTCAAGGCAGGTGAGTGCCCCTCACAAACCCTGTGGAGAACACCATCCTTCCCTCCACCATCATCACCAGCAACAAACGTTTGCTCAACCCACGGTGTGCAAGGCAGAGGGCCCGGTGCTGCAGGGACAGAAAGAGGAATGAGGGACAAATGAACATGATGGAAGGGAAGGGAAGGATGTCTGTGTTCTCCAGGGATTTGCCATCCACCTGGGTGCTGGTCTGATGTCCCTGAGTCACTGAAGCAATGCCAGCAGCATTTTTATGGGCAGAAAGATCAATGCCCGTAAATAGCAGGGCATCCTCCCTGTCAAATAAAGGTGACCTAAGATTCTACCAGTTCGGGCTGAGCTCTGAGTCACCTATTTATTCAAGTTATAATTACTGAGCTCCACTGCAGAGGCTGCTGGACACACCCCTATTTCCTAGAAATGGAACTCTTTCTAGCACCGTGCATGGCTGACTGGAATAAAACTATACCTCCCAAAAAAAAAAAAAAAA</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG030957]]

Revision as of 07:16, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT077773

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2433 nt

Genomic location

chr2-:239928722..239931139

Exon number

1

Exons

239928722..239931139

Genome context

Sequence
000001 AACGTTCCAT CTGGCCGGGT GGGCATAGAA GGGGGTGGAG GGAGCGCCTG GGTATTGTCA GGTGAGGAAG GTCAGAGGGA 000080
000081 GCCGTCCACC CACGTGGCCA GCGAAACGGA GCGTGGGAGG AGGCCCACGA ACACCTGAGA TCAAAACCCA CAGGGCACGT 000160
000161 GAGAAGATCC CAATTCCAGG GCGCGAACGA AGTCCAGGAG CTTCAAAATT GGCCCGCATC ATGAAAACAT CCGGCAGACG 000240
000241 ATTGAAGACT CACTCTTGAT GCAGACGCTG ACCCGAGGAA GGAAAAGGGT GAGAAACAGC TAGGCAGACA CAGCAGAGCG 000320
000321 GGAAAGAGGC CGACGCCGAC GGAATGCAGG AGGCTTGGGG GTCGGGCCCA GGAGATCTGA TCTGAGAGTA ACAAGTTACA 000400
000401 GGAGCGCGGA AAATCACAGA TGGAGGAAGG GCAGTCATTA CATATCGGAA CTCTCCCCTG AGTTGGGGGA CGCCTGCAGA 000480
000481 GTAGGCATGG AAGGGCTCAC GGAGTTCTAG GTTCAGCTGA TGAGAAAAGA TGCCCTCTGT GCTATGTCAT GGTAACAGCC 000560
000561 TCCGAACTCT GCATACACAC TGTATTCTTC CCTTTGTGTG ACACTCCAGA AACAACAAAT TGCATCCATA GTGATGGAAA 000640
000641 TCAGACCAGT CGTTGTCAGG GGCCACCGAG TTGACTGGGA TAGTGATGGA AATTTTAATG AATACATAGA TGTATAAACA 000720
000721 TGTCAAAACA TGTACTTTTT AAAATGGATC CATTTTATTG TATACAAATT TTACTAAATA AAATGGAATG GAAAATTATA 000800
000801 AGTGCTGTAC TTTCTGCATT GAGGAAAAAG AAAAGTCAAC CATTTTTCAG TCAAAAGGAA TATGTTACCT AAAAAAGCAA 000880
000881 AACAATCAGA ATGGTCTCAG GCTTCTCATC TACAACACTG CAAGCTAAAA GCAGTGGAAG AGCAAAAGAC TGCACCCCAG 000960
000961 GAACCCCTGT TCTCAATAAA GAGATTGTCG AAGTGTTAGG AGCAGAAGGT ATTTGAAGAT ACATAAAACC TCAGTGAGTT 001040
001041 TATCACCTAA GTGCCTCATC TAGGAAAGCA CTGGAGAAAC AGTTCTAATG AAATGGCAAA CCCAGAAACG ACATAGCAGA 001120
001121 GACCTCCGGA TGAAGGAGGA TGGAGAGGAA GGACGCAGTG GCATGAGGAA GCTTCATCTA CTCGGAGGCA TCCCGAGGGG 001200
001201 CTCAGCCGTT CGGAGCAGCG GAGGGGCACA AACGCTGCAG GGTGGCTGGG TGTGGTCTTC ACAGGGGACG GCAGAAGCAT 001280
001281 AAGAGAAACT GAGGCTGCGG GGTGAGTAGG AACCTGGCTG CAGTGAGTTA TGGGTTGAGA GAGACAGTGA GTGTGTGTTT 001360
001361 GGTGCACATA AGTAATTGTC TTTTTTTTTT TTTTTTGTCT CACTCTGCCA CCCAGGTTGG AGTGCAATGG TGCAATCTCG 001440
001441 GTTCACTGCA ACCTCCACCT CCCGGGTTCA AGCAATTCTT CCTGTCTCAG CCTCCTGAGT AGCTGGGATT ACAGGTGCTC 001520
001521 ACCACCATGC CCAGCTAATT TTTTTTTTTT CAGTAGCGAC AGGGTTTCAA ATCCTCTTAA GGGCACATTG ATAAGTCTGG 001600
001601 TTGAAAATAG GATTTGATTC ATCCAAAGCA GGAAGAAGTG ACTGCTATGA AGGTGAAGGC ACAGCCATGA AAGATTGATC 001680
001681 ATTCTGCAAC TCAGGAGGGT CTGTCTAGGG CCCAGGAGCC CGTGTTTTCC TTATTAACCA AAAATAATTA AGAAAGGCGA 001760
001761 TGATTCCGTC TGCACCCTGA GCTCTGCACG TTGATTTGGT GATGAACGGA GCACCATTGC CATGAGGACA ATTGCCAGTC 001840
001841 CTTTCCCGAC TGGAAGATGG CAACAGCCCT GCCCCATTTC CCCGCCGTAT TTATACTGGA CTTTAGAGAA CTGTGAAAGC 001920
001921 CCATCTGGAA AACACTCAAG GCAGGTGAGT GCCCCTCACA AACCCTGTGG AGAACACCAT CCTTCCCTCC ACCATCATCA 002000
002001 CCAGCAACAA ACGTTTGCTC AACCCACGGT GTGCAAGGCA GAGGGCCCGG TGCTGCAGGG ACAGAAAGAG GAATGAGGGA 002080
002081 CAAATGAACA TGATGGAAGG GAAGGGAAGG ATGTCTGTGT TCTCCAGGGA TTTGCCATCC ACCTGGGTGC TGGTCTGATG 002160
002161 TCCCTGAGTC ACTGAAGCAA TGCCAGCAGC ATTTTTATGG GCAGAAAGAT CAATGCCCGT AAATAGCAGG GCATCCTCCC 002240
002241 TGTCAAATAA AGGTGACCTA AGATTCTACC AGTTCGGGCT GAGCTCTGAG TCACCTATTT ATTCAAGTTA TAATTACTGA 002320
002321 GCTCCACTGC AGAGGCTGCT GGACACACCC CTATTTCCTA GAAATGGAAC TCTTTCTAGC ACCGTGCATG GCTGACTGGA 002400
002401 ATAAAACTAT ACCTCCCAAA AAAAAAAAAA AAA
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Predicted Small Protein

Name NONHSAT077773_smProtein_719:871
Length 51
Molecular weight 5995.1947
Aromaticity 0.14
Instability index 60.4402
Isoelectric point 9.84539794922
Runs 7
Runs residual 0.0246783625731
Runs probability 0.0406288641583
Amino acid sequence MSKHVLFKMDPFYCIQILLNKMEWKIISAVLSALRKKKSQPFFSQKEYVT
Secondary structure LLLEEEEELLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLEELL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii