Difference between revisions of "NONHSAT121715"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>TCGAGCCCAGTGCGGACCTTTCTTCAGCCTCTGTGCGACCGAGCCGCGCGCCAGGCTCCTGTGCGAGGAGGACGCGCTGACTCCCTCCGACCTGGGCTCCGATGGAGCAGAAATAGCGGGACCTGGACTTGTGGCGCGCCTGGTGCCACATCTCGGGCTCTGCGAGCGTCCTGGCGCGGGATCCTGCCGTGAGAAGGAGTTGGGGCGGGGGACCCGGCGGGGCATTGCGGGAGAAGGCCTGGGATCCCTGGGAGCCTTGTAGCGTGGGGGAGTTCACTGTGTAGAGAGGTTTCATGTCTTCATCTATATAGTCACTTATTTGTCTTAAAGTTCTCGAAATTCCCTCTTAGAGAAGGAGAAAGTTAGAGAACTGGAGGCTGCGTACCCTGATTACGCAGAAGGGAAGCAGCCTCGCATTCCCCGGGGCAGGCCCCCGCCCGCGCGTCCCGCCAGTAGGGGAATTTAGCGGACGGCTGCGGTTGTCTGGTGAAAGGCTATCCAAGGATAAGGGGCTTCACTTTTCCCAAGTAGGGGAAAGAGAAGGGGTCTACAGGGCTAGGGGTGGAGGGAGCGGATGCAGTGAGCAGCCTCCGCAGAGAAATTGACAATTTAACCAGGGACCTGCGGCAGAGACAAGGCGGAGACACTCCCTTGCCCAGGAAAGCCGCCAGAGTCCGGCTTGTACCTGGGGAAGAATCCTTAAGACGGTCTGGCCCAACACTCCTTTGCTCACAGAGAAAGGGGAGAAGACTCCCGAGGGTGAAAATGGTACATTCGGAGCTGGAACTCAGCTCGCTGACCCCAAGCAGTGTTCCCTTCTTTTCGCCAGGTTTGCATCCAAGAGAGGGGAGGACAGGGGCAAAAGGATGCAGGGAGGCTGCTGATTTCCACTGAAGAGCTAATTTCCTGTGAGACATTAACAGTGATTTAAGAAAAAGATTCCTGTAACTGTAATGTCTTACAATAACAGAATGCAGGAGAGCACATATCAATGAAGAAAAGACAAAATGTACTTATCCATGAAGCTGAGGTTAAGAAACCAGTGTCTTCAAGAGCCAGGGACAGCACTGGGTCTGTGCAGAGTTGAGAGATGGTGATGACATGtgacagagctccttgctgctcaaattttatgccagataaaatattcaccttctcggactccctggcaccaggcatggccatgtaatgtaagtg</dnaseq>| | sequence = <dnaseq>TCGAGCCCAGTGCGGACCTTTCTTCAGCCTCTGTGCGACCGAGCCGCGCGCCAGGCTCCTGTGCGAGGAGGACGCGCTGACTCCCTCCGACCTGGGCTCCGATGGAGCAGAAATAGCGGGACCTGGACTTGTGGCGCGCCTGGTGCCACATCTCGGGCTCTGCGAGCGTCCTGGCGCGGGATCCTGCCGTGAGAAGGAGTTGGGGCGGGGGACCCGGCGGGGCATTGCGGGAGAAGGCCTGGGATCCCTGGGAGCCTTGTAGCGTGGGGGAGTTCACTGTGTAGAGAGGTTTCATGTCTTCATCTATATAGTCACTTATTTGTCTTAAAGTTCTCGAAATTCCCTCTTAGAGAAGGAGAAAGTTAGAGAACTGGAGGCTGCGTACCCTGATTACGCAGAAGGGAAGCAGCCTCGCATTCCCCGGGGCAGGCCCCCGCCCGCGCGTCCCGCCAGTAGGGGAATTTAGCGGACGGCTGCGGTTGTCTGGTGAAAGGCTATCCAAGGATAAGGGGCTTCACTTTTCCCAAGTAGGGGAAAGAGAAGGGGTCTACAGGGCTAGGGGTGGAGGGAGCGGATGCAGTGAGCAGCCTCCGCAGAGAAATTGACAATTTAACCAGGGACCTGCGGCAGAGACAAGGCGGAGACACTCCCTTGCCCAGGAAAGCCGCCAGAGTCCGGCTTGTACCTGGGGAAGAATCCTTAAGACGGTCTGGCCCAACACTCCTTTGCTCACAGAGAAAGGGGAGAAGACTCCCGAGGGTGAAAATGGTACATTCGGAGCTGGAACTCAGCTCGCTGACCCCAAGCAGTGTTCCCTTCTTTTCGCCAGGTTTGCATCCAAGAGAGGGGAGGACAGGGGCAAAAGGATGCAGGGAGGCTGCTGATTTCCACTGAAGAGCTAATTTCCTGTGAGACATTAACAGTGATTTAAGAAAAAGATTCCTGTAACTGTAATGTCTTACAATAACAGAATGCAGGAGAGCACATATCAATGAAGAAAAGACAAAATGTACTTATCCATGAAGCTGAGGTTAAGAAACCAGTGTCTTCAAGAGCCAGGGACAGCACTGGGTCTGTGCAGAGTTGAGAGATGGTGATGACATGtgacagagctccttgctgctcaaattttatgccagataaaatattcaccttctcggactccctggcaccaggcatggccatgtaatgtaagtg</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG048073]] |
Revision as of 07:18, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT121715 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1197 nt |
| Genomic location |
chr7+:79083373..79100002 |
| Exon number |
3 |
| Exons |
79083373..79084323,79088163..79088315,79099910..79100002 |
| Genome context |
|
| Sequence |
000001 TCGAGCCCAG TGCGGACCTT TCTTCAGCCT CTGTGCGACC GAGCCGCGCG CCAGGCTCCT GTGCGAGGAG GACGCGCTGA 000080
000081 CTCCCTCCGA CCTGGGCTCC GATGGAGCAG AAATAGCGGG ACCTGGACTT GTGGCGCGCC TGGTGCCACA TCTCGGGCTC 000160 000161 TGCGAGCGTC CTGGCGCGGG ATCCTGCCGT GAGAAGGAGT TGGGGCGGGG GACCCGGCGG GGCATTGCGG GAGAAGGCCT 000240 000241 GGGATCCCTG GGAGCCTTGT AGCGTGGGGG AGTTCACTGT GTAGAGAGGT TTCATGTCTT CATCTATATA GTCACTTATT 000320 000321 TGTCTTAAAG TTCTCGAAAT TCCCTCTTAG AGAAGGAGAA AGTTAGAGAA CTGGAGGCTG CGTACCCTGA TTACGCAGAA 000400 000401 GGGAAGCAGC CTCGCATTCC CCGGGGCAGG CCCCCGCCCG CGCGTCCCGC CAGTAGGGGA ATTTAGCGGA CGGCTGCGGT 000480 000481 TGTCTGGTGA AAGGCTATCC AAGGATAAGG GGCTTCACTT TTCCCAAGTA GGGGAAAGAG AAGGGGTCTA CAGGGCTAGG 000560 000561 GGTGGAGGGA GCGGATGCAG TGAGCAGCCT CCGCAGAGAA ATTGACAATT TAACCAGGGA CCTGCGGCAG AGACAAGGCG 000640 000641 GAGACACTCC CTTGCCCAGG AAAGCCGCCA GAGTCCGGCT TGTACCTGGG GAAGAATCCT TAAGACGGTC TGGCCCAACA 000720 000721 CTCCTTTGCT CACAGAGAAA GGGGAGAAGA CTCCCGAGGG TGAAAATGGT ACATTCGGAG CTGGAACTCA GCTCGCTGAC 000800 000801 CCCAAGCAGT GTTCCCTTCT TTTCGCCAGG TTTGCATCCA AGAGAGGGGA GGACAGGGGC AAAAGGATGC AGGGAGGCTG 000880 000881 CTGATTTCCA CTGAAGAGCT AATTTCCTGT GAGACATTAA CAGTGATTTA AGAAAAAGAT TCCTGTAACT GTAATGTCTT 000960 000961 ACAATAACAG AATGCAGGAG AGCACATATC AATGAAGAAA AGACAAAATG TACTTATCCA TGAAGCTGAG GTTAAGAAAC 001040 001041 CAGTGTCTTC AAGAGCCAGG GACAGCACTG GGTCTGTGCA GAGTTGAGAG ATGGTGATGA CATGtgacag agctccttgc 001120 001121 tgctcaaatt ttatgccaga taaaatattc accttctcgg actccctggc accaggcatg gccatgtaat gtaagtg |
Predicted Small Protein
| Name | NONHSAT121715_smProtein_1007:1096 |
| Length | 30 |
| Molecular weight | 3466.1338 |
| Aromaticity | 0.0689655172414 |
| Instability index | 75.2206896552 |
| Isoelectric point | 9.49444580078 |
| Runs | 6 |
| Runs residual | 0.0073275862069 |
| Runs probability | 0.0304863687217 |
| Amino acid sequence | MYLSMKLRLRNQCLQEPGTALGLCRVERW |
| Secondary structure | LEEHHHHHHHHHHHLLLLLLLLLLEEELL |
| PRMN | - |
| PiMo | - |
