Difference between revisions of "ENST00000587441.1"
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sequence = <dnaseq>GGAGACTCTAAGACTTCTGAAGAGTTTCTTGCTTCTTTCCTGTGGGGCAGTGACTCCACTTCCCAGCAGTAATGGAATATCCTGAATTAGCTACATTAATGTTAGAACCATTTGGACCTCACCCAGGACTTCAACTACATTATGGATGTTATAAGAAATGAGACTCACTACTGAATTCACAGCAGGCATGGTTGAAGGCACCATTCACTATAGCTTGCAGTGTTCCCTTTATGAGATTTGTATGAGAAATTCCTCTCATAGGTCAAGTTCTTGGGAGAAAATTCTCCCAAAGAGCAAGTCCCAGGAAAATCTTGGCTGAGTAACTCCTGGACGATTGGCACAGAAGAAGGCACAAGGCAAATACCCATCTCTGTACACCCTGTGCTACTGTGTCATGTGCTGCTCCAGGCAACTCCAATGGATTGGCCACCCTGGCCAATGTGCCCTCCAAACACCAGCACTGAGTAGAAAGAGGCTCTGATTCATGAAATGTGAATTTATGACAGTTGCCACTCTTAAAAAAAAAAACAAACAGACAGAACTTGAGCAATACATGACTGATGCATTCTCAGCCTGCTTCCTGTGTTCCATCTGTCTTTCTGCCAGTGCATTCACCCTCCAGGTTCTAGTATGTTACGTTTATGTTCCCCTGCTTTCTACAATCCTGTTCAAAGAGTTGCTGACTTAACCACAGAGAGGATTCCAGAACCTGAGACACAGAATAAACTTGAGCAATCATAGTCCATCCACTTCATTGTCTCATCAAAAACCAAAGGTCCAGTGAAGCTCTGGAACTCAACGCTGTAAAGGAG</dnaseq>| | sequence = <dnaseq>GGAGACTCTAAGACTTCTGAAGAGTTTCTTGCTTCTTTCCTGTGGGGCAGTGACTCCACTTCCCAGCAGTAATGGAATATCCTGAATTAGCTACATTAATGTTAGAACCATTTGGACCTCACCCAGGACTTCAACTACATTATGGATGTTATAAGAAATGAGACTCACTACTGAATTCACAGCAGGCATGGTTGAAGGCACCATTCACTATAGCTTGCAGTGTTCCCTTTATGAGATTTGTATGAGAAATTCCTCTCATAGGTCAAGTTCTTGGGAGAAAATTCTCCCAAAGAGCAAGTCCCAGGAAAATCTTGGCTGAGTAACTCCTGGACGATTGGCACAGAAGAAGGCACAAGGCAAATACCCATCTCTGTACACCCTGTGCTACTGTGTCATGTGCTGCTCCAGGCAACTCCAATGGATTGGCCACCCTGGCCAATGTGCCCTCCAAACACCAGCACTGAGTAGAAAGAGGCTCTGATTCATGAAATGTGAATTTATGACAGTTGCCACTCTTAAAAAAAAAAACAAACAGACAGAACTTGAGCAATACATGACTGATGCATTCTCAGCCTGCTTCCTGTGTTCCATCTGTCTTTCTGCCAGTGCATTCACCCTCCAGGTTCTAGTATGTTACGTTTATGTTCCCCTGCTTTCTACAATCCTGTTCAAAGAGTTGCTGACTTAACCACAGAGAGGATTCCAGAACCTGAGACACAGAATAAACTTGAGCAATCATAGTCCATCCACTTCATTGTCTCATCAAAAACCAAAGGTCCAGTGAAGCTCTGGAACTCAACGCTGTAAAGGAG</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(AS)]][[Category:ENSG00000236581.4]] | + | [[Category:Intronic(AS)]][[Category:ENSG00000236581.4]][[Category:NONHSAG013195]] |
Revision as of 07:19, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000587441.1 |
Source |
Gencode19 |
Same with |
NONHSAT033126 |
Classification |
intronic(AS) |
Length |
812 nt |
Genomic location |
chr13+:33851690..33855355 |
Exon number |
5 |
Exons |
33851690..33851833,33852633..33852806,33853670..33853793,33854034..33854213,33855166..33855355 |
Genome context |
|
Sequence |
000001 GGAGACTCTA AGACTTCTGA AGAGTTTCTT GCTTCTTTCC TGTGGGGCAG TGACTCCACT TCCCAGCAGT AATGGAATAT 000080
000081 CCTGAATTAG CTACATTAAT GTTAGAACCA TTTGGACCTC ACCCAGGACT TCAACTACAT TATGGATGTT ATAAGAAATG 000160 000161 AGACTCACTA CTGAATTCAC AGCAGGCATG GTTGAAGGCA CCATTCACTA TAGCTTGCAG TGTTCCCTTT ATGAGATTTG 000240 000241 TATGAGAAAT TCCTCTCATA GGTCAAGTTC TTGGGAGAAA ATTCTCCCAA AGAGCAAGTC CCAGGAAAAT CTTGGCTGAG 000320 000321 TAACTCCTGG ACGATTGGCA CAGAAGAAGG CACAAGGCAA ATACCCATCT CTGTACACCC TGTGCTACTG TGTCATGTGC 000400 000401 TGCTCCAGGC AACTCCAATG GATTGGCCAC CCTGGCCAAT GTGCCCTCCA AACACCAGCA CTGAGTAGAA AGAGGCTCTG 000480 000481 ATTCATGAAA TGTGAATTTA TGACAGTTGC CACTCTTAAA AAAAAAAACA AACAGACAGA ACTTGAGCAA TACATGACTG 000560 000561 ATGCATTCTC AGCCTGCTTC CTGTGTTCCA TCTGTCTTTC TGCCAGTGCA TTCACCCTCC AGGTTCTAGT ATGTTACGTT 000640 000641 TATGTTCCCC TGCTTTCTAC AATCCTGTTC AAAGAGTTGC TGACTTAACC ACAGAGAGGA TTCCAGAACC TGAGACACAG 000720 000721 AATAAACTTG AGCAATCATA GTCCATCCAC TTCATTGTCT CATCAAAAAC CAAAGGTCCA GTGAAGCTCT GGAACTCAAC 000800 000801 GCTGTAAAGG AG |
Predicted Small Protein
Name | ENST00000587441.1_smProtein_71:160 |
Length | 30 |
Molecular weight | 3363.9225 |
Aromaticity | 0.137931034483 |
Instability index | 55.6586206897 |
Isoelectric point | 5.98065185547 |
Runs | 5 |
Runs residual | 0.0271551724138 |
Runs probability | 0.0182653241477 |
Amino acid sequence | MEYPELATLMLEPFGPHPGLQLHYGCYKK |
Secondary structure | LLLHHHHHHHHLLLLLLLLLLLLLLEELL |
PRMN | - |
PiMo | - |