Difference between revisions of "ENST00000521687.1"
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sequence = <dnaseq>TTCTGAACCAGGAATTGTCTCCAACTCCAGGCGCTCAGGGAATCGCCTTTTCCGGTGTCCAGGCGCTCTGCAGACAAATAAACAGCAGAAGCAAATGGTCACCGAGCCGGCAGTCAGCTTTCTGGGAGTGGGAGATGATGGGGAAAGAGGAAAGAATCGTCCGCTCGCCGGACCCTGGCTTGGAGAAGTTCTGCGCTCCGCTGGGACTCTGCGGGCCCTTTGCGTCTACAGACCTATCCCTGCCCCGACTACCCCTTCACTCAGACCCAGGGAAGGACACGTTTCTATGCCTTACAGAGACTTGAAGCCTGAAAGCCTGGCCAAGTTTGGGAAGAAGAGGAGCCCTCTCAGAGCTCAAGAGCCTTCCTACTCTTTGGAACTTTTCCACAGTAGGCCAAGCTTGACAAGAGTTCAGCTCAAGTTGAACATACATACACACACTCTCACACACAAATTATGTGAGCCGTCAGAATCCAAGTGAATCCAGCTCAAGCTATCTACAAGGTTTTTACATGCAAGGTCAAGTATCTCAATCCAGAGGACTTTTGTTTTCTTAATGAAAAGCTTAGAAAACACATGAATCTTAGATTTTTAATGTTTTTTAAATGGAGTTTATTCTTAGCACATGGCTTTCTATGTAGCCACATCACAATTTGTACAGTTCCACATAAGTCTAAATGCACTCCCCTCTCCCCAAAGACCGTGCCCCAGAAGGGGACAACAGTATCTCTGTAACAGTGTCTTAAATAAATGCAAGTAAGAAA</dnaseq>| | sequence = <dnaseq>TTCTGAACCAGGAATTGTCTCCAACTCCAGGCGCTCAGGGAATCGCCTTTTCCGGTGTCCAGGCGCTCTGCAGACAAATAAACAGCAGAAGCAAATGGTCACCGAGCCGGCAGTCAGCTTTCTGGGAGTGGGAGATGATGGGGAAAGAGGAAAGAATCGTCCGCTCGCCGGACCCTGGCTTGGAGAAGTTCTGCGCTCCGCTGGGACTCTGCGGGCCCTTTGCGTCTACAGACCTATCCCTGCCCCGACTACCCCTTCACTCAGACCCAGGGAAGGACACGTTTCTATGCCTTACAGAGACTTGAAGCCTGAAAGCCTGGCCAAGTTTGGGAAGAAGAGGAGCCCTCTCAGAGCTCAAGAGCCTTCCTACTCTTTGGAACTTTTCCACAGTAGGCCAAGCTTGACAAGAGTTCAGCTCAAGTTGAACATACATACACACACTCTCACACACAAATTATGTGAGCCGTCAGAATCCAAGTGAATCCAGCTCAAGCTATCTACAAGGTTTTTACATGCAAGGTCAAGTATCTCAATCCAGAGGACTTTTGTTTTCTTAATGAAAAGCTTAGAAAACACATGAATCTTAGATTTTTAATGTTTTTTAAATGGAGTTTATTCTTAGCACATGGCTTTCTATGTAGCCACATCACAATTTGTACAGTTCCACATAAGTCTAAATGCACTCCCCTCTCCCCAAAGACCGTGCCCCAGAAGGGGACAACAGTATCTCTGTAACAGTGTCTTAAATAAATGCAAGTAAGAAA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]][[Category:lnc-EVX1-10]] | + | [[Category:Antisense]][[Category:lnc-EVX1-10]][[Category:NONHSAG047182]] |
Revision as of 07:20, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000521687.1 |
Source |
Gencode19 |
Same with |
lnc-EVX1-10:9,NONHSAT119679 |
Classification |
antisense |
Length |
764 nt |
Genomic location |
chr7+:27162195..27168312 |
Exon number |
3 |
Exons |
27162195..27162285,27163079..27163257,27167819..27168312 |
Genome context |
|
Sequence |
000001 TTCTGAACCA GGAATTGTCT CCAACTCCAG GCGCTCAGGG AATCGCCTTT TCCGGTGTCC AGGCGCTCTG CAGACAAATA 000080
000081 AACAGCAGAA GCAAATGGTC ACCGAGCCGG CAGTCAGCTT TCTGGGAGTG GGAGATGATG GGGAAAGAGG AAAGAATCGT 000160 000161 CCGCTCGCCG GACCCTGGCT TGGAGAAGTT CTGCGCTCCG CTGGGACTCT GCGGGCCCTT TGCGTCTACA GACCTATCCC 000240 000241 TGCCCCGACT ACCCCTTCAC TCAGACCCAG GGAAGGACAC GTTTCTATGC CTTACAGAGA CTTGAAGCCT GAAAGCCTGG 000320 000321 CCAAGTTTGG GAAGAAGAGG AGCCCTCTCA GAGCTCAAGA GCCTTCCTAC TCTTTGGAAC TTTTCCACAG TAGGCCAAGC 000400 000401 TTGACAAGAG TTCAGCTCAA GTTGAACATA CATACACACA CTCTCACACA CAAATTATGT GAGCCGTCAG AATCCAAGTG 000480 000481 AATCCAGCTC AAGCTATCTA CAAGGTTTTT ACATGCAAGG TCAAGTATCT CAATCCAGAG GACTTTTGTT TTCTTAATGA 000560 000561 AAAGCTTAGA AAACACATGA ATCTTAGATT TTTAATGTTT TTTAAATGGA GTTTATTCTT AGCACATGGC TTTCTATGTA 000640 000641 GCCACATCAC AATTTGTACA GTTCCACATA AGTCTAAATG CACTCCCCTC TCCCCAAAGA CCGTGCCCCA GAAGGGGACA 000720 000721 ACAGTATCTC TGTAACAGTG TCTTAAATAA ATGCAAGTAA GAAA |
Predicted Small Protein
Name | ENST00000521687.1_smProtein_134:304 |
Length | 57 |
Molecular weight | 6089.0268 |
Aromaticity | 0.0535714285714 |
Instability index | 43.7357142857 |
Isoelectric point | 5.08233642578 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0293612940672 |
Amino acid sequence | MMGKEERIVRSPDPGLEKFCAPLGLCGPFASTDLSLPRLPLHSDPGKDTFLCLTET |
Secondary structure | LLLLEEEEEELLLLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEEELLL |
PRMN | - |
PiMo | - |