Difference between revisions of "ENST00000559203.1"
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sequence = <dnaseq>AAGCAGGCACGCAAGCAGACACACCTTATTCTCTACAGCATCATTTATACCTCAACTAAGTCAGCTGAACAAATGCCTGCTGAAAAGTTCTGGGAGTGGCATAGCTAAGAACCAGAAAGGCGATCTTTCTTTTGGATTAAGTCAACAGAGTCATACCCACAAGGAGAACTATCAAATATCAGATGCGAGAGGTGAAGTGGGGTTATAAGGTGAGAGCTGAGAAGGGAGAAACAGGGGATTTGATTTAGGACAAATTGTTATTTGGATGGATGCTTGTCTATTGAGAGAGTAATTGTTAAACTAAAGGAAACTGGTCACAAATACTTTAGCAGTGGCTATAAATGACCAGTGGGCCAAGGATTTTGAGATCGTGAGAGACTTCTCCGGGAATGTTGTCATTCATTTCACTCCAGTGTGGCTCTTTTCCTCCATCTGCGCTCACTTTTCTAGGAGAACTATGGCCACTATGGAGAATATGAAAACATTGCTGAAGGAGGTGAAAGCCATTTCAGAAGAAGAGTTATATATTAGCTTTTGGCAGTGACAGCGTTATGGGCACGGACATTCAGCCTTTCCAGTTGACTGCTTTGAAGGGGCAATGTTCACGTGGAAGTATACCTCCTAGTATGTTTGCTAAAATAAAATCAGCTTCATTACCTAATAACATAAATGACTTTGGGAGAA</dnaseq>| | sequence = <dnaseq>AAGCAGGCACGCAAGCAGACACACCTTATTCTCTACAGCATCATTTATACCTCAACTAAGTCAGCTGAACAAATGCCTGCTGAAAAGTTCTGGGAGTGGCATAGCTAAGAACCAGAAAGGCGATCTTTCTTTTGGATTAAGTCAACAGAGTCATACCCACAAGGAGAACTATCAAATATCAGATGCGAGAGGTGAAGTGGGGTTATAAGGTGAGAGCTGAGAAGGGAGAAACAGGGGATTTGATTTAGGACAAATTGTTATTTGGATGGATGCTTGTCTATTGAGAGAGTAATTGTTAAACTAAAGGAAACTGGTCACAAATACTTTAGCAGTGGCTATAAATGACCAGTGGGCCAAGGATTTTGAGATCGTGAGAGACTTCTCCGGGAATGTTGTCATTCATTTCACTCCAGTGTGGCTCTTTTCCTCCATCTGCGCTCACTTTTCTAGGAGAACTATGGCCACTATGGAGAATATGAAAACATTGCTGAAGGAGGTGAAAGCCATTTCAGAAGAAGAGTTATATATTAGCTTTTGGCAGTGACAGCGTTATGGGCACGGACATTCAGCCTTTCCAGTTGACTGCTTTGAAGGGGCAATGTTCACGTGGAAGTATACCTCCTAGTATGTTTGCTAAAATAAAATCAGCTTCATTACCTAATAACATAAATGACTTTGGGAGAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Antisense]][[Category:lnc-FOXB1-3]] | + | [[Category:Antisense]][[Category:lnc-FOXB1-3]][[Category:NONHSAG017074]] |
Revision as of 07:20, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
ENST00000559203.1 |
| Source |
Gencode19 |
| Same with |
lnc-FOXB1-3:7,NONHSAT044222 |
| Classification |
antisense |
| Length |
684 nt |
| Genomic location |
chr15+:60812260..60840163 |
| Exon number |
3 |
| Exons |
60812260..60812494,60838464..60838665,60839917..60840163 |
| Genome context |
|
| Sequence |
000001 AAGCAGGCAC GCAAGCAGAC ACACCTTATT CTCTACAGCA TCATTTATAC CTCAACTAAG TCAGCTGAAC AAATGCCTGC 000080
000081 TGAAAAGTTC TGGGAGTGGC ATAGCTAAGA ACCAGAAAGG CGATCTTTCT TTTGGATTAA GTCAACAGAG TCATACCCAC 000160 000161 AAGGAGAACT ATCAAATATC AGATGCGAGA GGTGAAGTGG GGTTATAAGG TGAGAGCTGA GAAGGGAGAA ACAGGGGATT 000240 000241 TGATTTAGGA CAAATTGTTA TTTGGATGGA TGCTTGTCTA TTGAGAGAGT AATTGTTAAA CTAAAGGAAA CTGGTCACAA 000320 000321 ATACTTTAGC AGTGGCTATA AATGACCAGT GGGCCAAGGA TTTTGAGATC GTGAGAGACT TCTCCGGGAA TGTTGTCATT 000400 000401 CATTTCACTC CAGTGTGGCT CTTTTCCTCC ATCTGCGCTC ACTTTTCTAG GAGAACTATG GCCACTATGG AGAATATGAA 000480 000481 AACATTGCTG AAGGAGGTGA AAGCCATTTC AGAAGAAGAG TTATATATTA GCTTTTGGCA GTGACAGCGT TATGGGCACG 000560 000561 GACATTCAGC CTTTCCAGTT GACTGCTTTG AAGGGGCAAT GTTCACGTGG AAGTATACCT CCTAGTATGT TTGCTAAAAT 000640 000641 AAAATCAGCT TCATTACCTA ATAACATAAA TGACTTTGGG AGAA |
Predicted Small Protein
| Name | ENST00000559203.1_smProtein_389:478 |
| Length | 30 |
| Molecular weight | 3310.9243 |
| Aromaticity | 0.172413793103 |
| Instability index | 56.2068965517 |
| Isoelectric point | 5.75079345703 |
| Runs | 5 |
| Runs residual | 0.0271551724138 |
| Runs probability | 0.0435435435435 |
| Amino acid sequence | MLSFISLQCGSFPPSALTFLGELWPLWRI |
| Secondary structure | LLEEEELLLLLLLHHHHHHHHHHHHHHLL |
| PRMN | - |
| PiMo | - |
