Difference between revisions of "ENST00000584621.1"

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sequence = <dnaseq>ATAATGCAGCAGGGCCACCAGTCAGTTTCAGATAATGATGTCAACCCCGGCCACCAAGAAGTAACCTTGTCTCCACTAGACAGAGCAGGTTGCAGGAATTTAGCCAATTCAGAGGTCTTGTTCTCCATAATTTGGAATTTTCCTTCGGATTTGATCAAGTTGGATAGAGTTGGTCAAACCCAATGGGAAAAAGATGAAAACAACAAGAAACAGAAACAAACAGCAACAACAACAACAACAAAAACAATGCATTTAATTAAATGAAGATGAGCTCATGCTGGAGTAGGGTGGACTCTGAACCCAGTGGGACAAGCGTCCTTATTAAGAAGAGGGAAATCTGGACACACACAGAGCAGAGACCGCCGTGTGAAGATGGAGGCAGAGATCGGAGAGATGCTGCCACACGCCACAAATGCCTGGGGCTCCCAGAAACTACACGGAGCCTCCCCCAGCGGCTTCAGCAGGAGCATGGCTCGGCCAACACTTTGATCTTGGTCTTCCAGCCTCCAGAACGTTTTCCTAAAATTCCCTTTTCCACTGGTGTGTGGTGCAAGATGAGGCACATTTTCCATGGATGGTGAACAGAGGGAGGAGCCTTTTGATCACAACCAGGTCACCCCACTTCTAAGCCACTGTGCCTCCAGCCCCACAAGACTAAGGAGAGAGAGCGCAGCGTGGTGGAGAGTGAGCTGTGCTGGGACCATTGTTTCCGTAACCTCGTTTTCTGTGTCCAGCTGACACACCTTCAAAGTGGCATCAGGTCCTAAACTGTAGCTTGCAATGTGCCTGTTTCCAGAAACCAAGGTGAAAGTGCTTTTAGACAGTGTTCCCATGCAAGAGTCCCTTCCCAGCTTTTTTCTGGAAATGCATGTTTCTCTGAACTCTGAGTCCCAAGAAAAATCACTTGAGACACCAAGAAAATGGGGGAAGTGCTAAAATTGTGTGGGAATTCAAGCTTAACAATAAACATCAAGACATTTTTGATAAAAATGAATCCACTGACATCGGGGAGGAGCAAGAGAACAGCACGCTGACACTGGGTCAGAGGCTAAGACCGACATTTCTGGGAACCACTCCCGGAAGGGCACAGAGGAGACGCTTTCAGCCTCTCATCAGCCAGCCTGGCCTGTAGCTGCTGCACGTTATGAGTGTGTTCCTGGCATGACTGCTTCTAACAACTGGGTCTCGCTTGTTGCCCAGGCTGTAGTGCACTGGTGCAATCATGGCTCACTGCAGCCTTGACCTCCTGGATCAAGGTATCCTCCCACCTCTCAGCCTCCCAAGCAGCTGGGACTATGGGTGCATGCCACCACACCCAGCTAATTTTTGTATTTATGGAGATATGGGTCTCACCATGTTACCCAGGCTGGTCTTGAACTTCTGGGCTCAAGCCTTCTGCCTGCCCTGGCCTTCCAAAGCATTGGAATTACAGGCCTGAGCCACTGTGCTAGGCCAGAGCCAACAGGACTTACTGAGAAATTATCTGAGAGAGAGGGGTCAAGGAAGACTCCCCCTGTTCAACCAAGCAACGAGGTGAATGGTGCTGCTGCTTCCTGAGATGGGGAAGACTGTAGAGGAAACAAACCAGGAACGACAAATCAGTAATTTAGCTTTGAATACATTAGGTTTGAGATGGCTAGTCTGTACCCAAACAGACCACACTGTGGCATCTGGGCAGCAGGATCTGCAGAATCCAGCAGGATGGATGCTGATGCCAAGCTGAGTAGACAGTTGGGTCTGTGAGTCTAAAGCTCAGGGAAGACCTCAGGGTCTGGGATACAAATCTGGAGATCATCACCCTGTCCATGAAAGCCAAGGGAATGATGGAAGATACTATGAGAAAAAGTGAAGAGAGGAAAGAGAAGAGGTCCATGGAAGGAGACCTGGGAGAATCCAACCTTCGATTAGATCAGGAAGAGGAGAAGAATCCAGTAAAAAACTCTGAGAAGTCTCTGGGAAGGAAGTCTTCCTTCCTTCCCCTGTACCAGGAGAGGTGCTATCCCAGAAATTAGTAAAGAAACAGTTTTTGATGGGGAGAACAGGATCACCTTTGTCAACTGCTGCTGCGAGACTTGGAAAAATAAGGACTGGGAAGAGAGCAATAGAAACTTTGAAAGCCATTGGTTATCTTGATAAGAGTTGTTTCTGTGGGGGTGGTGAGAACTGGAGCCTGACTGGATGGGTTCAAGAGAGAATGGGGAGTTCTAGCCAAGAAGGCTGATGAGGATGAGTCAAATTAAAAATGTTTTCTTTTTATGAGTCCTCTCATATTTACTGATACAACTGATATATTGGGTCTCCATTCTGCCACATTACTTTATATTGATCATGTATTGTATCTGCTATGCAATTGTATTGCATGTATCTGCATGGCAATTGTATTGCCATGCAATGTATTTTTTTTTACTTTAAAAATTATATTTATAAAGGTTTGTAA</dnaseq>|
 
sequence = <dnaseq>ATAATGCAGCAGGGCCACCAGTCAGTTTCAGATAATGATGTCAACCCCGGCCACCAAGAAGTAACCTTGTCTCCACTAGACAGAGCAGGTTGCAGGAATTTAGCCAATTCAGAGGTCTTGTTCTCCATAATTTGGAATTTTCCTTCGGATTTGATCAAGTTGGATAGAGTTGGTCAAACCCAATGGGAAAAAGATGAAAACAACAAGAAACAGAAACAAACAGCAACAACAACAACAACAAAAACAATGCATTTAATTAAATGAAGATGAGCTCATGCTGGAGTAGGGTGGACTCTGAACCCAGTGGGACAAGCGTCCTTATTAAGAAGAGGGAAATCTGGACACACACAGAGCAGAGACCGCCGTGTGAAGATGGAGGCAGAGATCGGAGAGATGCTGCCACACGCCACAAATGCCTGGGGCTCCCAGAAACTACACGGAGCCTCCCCCAGCGGCTTCAGCAGGAGCATGGCTCGGCCAACACTTTGATCTTGGTCTTCCAGCCTCCAGAACGTTTTCCTAAAATTCCCTTTTCCACTGGTGTGTGGTGCAAGATGAGGCACATTTTCCATGGATGGTGAACAGAGGGAGGAGCCTTTTGATCACAACCAGGTCACCCCACTTCTAAGCCACTGTGCCTCCAGCCCCACAAGACTAAGGAGAGAGAGCGCAGCGTGGTGGAGAGTGAGCTGTGCTGGGACCATTGTTTCCGTAACCTCGTTTTCTGTGTCCAGCTGACACACCTTCAAAGTGGCATCAGGTCCTAAACTGTAGCTTGCAATGTGCCTGTTTCCAGAAACCAAGGTGAAAGTGCTTTTAGACAGTGTTCCCATGCAAGAGTCCCTTCCCAGCTTTTTTCTGGAAATGCATGTTTCTCTGAACTCTGAGTCCCAAGAAAAATCACTTGAGACACCAAGAAAATGGGGGAAGTGCTAAAATTGTGTGGGAATTCAAGCTTAACAATAAACATCAAGACATTTTTGATAAAAATGAATCCACTGACATCGGGGAGGAGCAAGAGAACAGCACGCTGACACTGGGTCAGAGGCTAAGACCGACATTTCTGGGAACCACTCCCGGAAGGGCACAGAGGAGACGCTTTCAGCCTCTCATCAGCCAGCCTGGCCTGTAGCTGCTGCACGTTATGAGTGTGTTCCTGGCATGACTGCTTCTAACAACTGGGTCTCGCTTGTTGCCCAGGCTGTAGTGCACTGGTGCAATCATGGCTCACTGCAGCCTTGACCTCCTGGATCAAGGTATCCTCCCACCTCTCAGCCTCCCAAGCAGCTGGGACTATGGGTGCATGCCACCACACCCAGCTAATTTTTGTATTTATGGAGATATGGGTCTCACCATGTTACCCAGGCTGGTCTTGAACTTCTGGGCTCAAGCCTTCTGCCTGCCCTGGCCTTCCAAAGCATTGGAATTACAGGCCTGAGCCACTGTGCTAGGCCAGAGCCAACAGGACTTACTGAGAAATTATCTGAGAGAGAGGGGTCAAGGAAGACTCCCCCTGTTCAACCAAGCAACGAGGTGAATGGTGCTGCTGCTTCCTGAGATGGGGAAGACTGTAGAGGAAACAAACCAGGAACGACAAATCAGTAATTTAGCTTTGAATACATTAGGTTTGAGATGGCTAGTCTGTACCCAAACAGACCACACTGTGGCATCTGGGCAGCAGGATCTGCAGAATCCAGCAGGATGGATGCTGATGCCAAGCTGAGTAGACAGTTGGGTCTGTGAGTCTAAAGCTCAGGGAAGACCTCAGGGTCTGGGATACAAATCTGGAGATCATCACCCTGTCCATGAAAGCCAAGGGAATGATGGAAGATACTATGAGAAAAAGTGAAGAGAGGAAAGAGAAGAGGTCCATGGAAGGAGACCTGGGAGAATCCAACCTTCGATTAGATCAGGAAGAGGAGAAGAATCCAGTAAAAAACTCTGAGAAGTCTCTGGGAAGGAAGTCTTCCTTCCTTCCCCTGTACCAGGAGAGGTGCTATCCCAGAAATTAGTAAAGAAACAGTTTTTGATGGGGAGAACAGGATCACCTTTGTCAACTGCTGCTGCGAGACTTGGAAAAATAAGGACTGGGAAGAGAGCAATAGAAACTTTGAAAGCCATTGGTTATCTTGATAAGAGTTGTTTCTGTGGGGGTGGTGAGAACTGGAGCCTGACTGGATGGGTTCAAGAGAGAATGGGGAGTTCTAGCCAAGAAGGCTGATGAGGATGAGTCAAATTAAAAATGTTTTCTTTTTATGAGTCCTCTCATATTTACTGATACAACTGATATATTGGGTCTCCATTCTGCCACATTACTTTATATTGATCATGTATTGTATCTGCTATGCAATTGTATTGCATGTATCTGCATGGCAATTGTATTGCCATGCAATGTATTTTTTTTTACTTTAAAAATTATATTTATAAAGGTTTGTAA</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-GGCT-1]]
+
[[Category:Intergenic]][[Category:lnc-GGCT-1]][[Category:NONHSAG047260]]

Revision as of 07:25, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000584621.1

Source

Gencode19

Same with

lnc-GGCT-1:16,NONHSAT119898

Classification

intergenic

Length

2437 nt

Genomic location

chr7-:30597712..30612704

Exon number

5

Exons

30597712..30598971,30601082..30601744,30603347..30603614,30608449..30608605,30612616..30612704

Genome context

Sequence
000001 ATAATGCAGC AGGGCCACCA GTCAGTTTCA GATAATGATG TCAACCCCGG CCACCAAGAA GTAACCTTGT CTCCACTAGA 000080
000081 CAGAGCAGGT TGCAGGAATT TAGCCAATTC AGAGGTCTTG TTCTCCATAA TTTGGAATTT TCCTTCGGAT TTGATCAAGT 000160
000161 TGGATAGAGT TGGTCAAACC CAATGGGAAA AAGATGAAAA CAACAAGAAA CAGAAACAAA CAGCAACAAC AACAACAACA 000240
000241 AAAACAATGC ATTTAATTAA ATGAAGATGA GCTCATGCTG GAGTAGGGTG GACTCTGAAC CCAGTGGGAC AAGCGTCCTT 000320
000321 ATTAAGAAGA GGGAAATCTG GACACACACA GAGCAGAGAC CGCCGTGTGA AGATGGAGGC AGAGATCGGA GAGATGCTGC 000400
000401 CACACGCCAC AAATGCCTGG GGCTCCCAGA AACTACACGG AGCCTCCCCC AGCGGCTTCA GCAGGAGCAT GGCTCGGCCA 000480
000481 ACACTTTGAT CTTGGTCTTC CAGCCTCCAG AACGTTTTCC TAAAATTCCC TTTTCCACTG GTGTGTGGTG CAAGATGAGG 000560
000561 CACATTTTCC ATGGATGGTG AACAGAGGGA GGAGCCTTTT GATCACAACC AGGTCACCCC ACTTCTAAGC CACTGTGCCT 000640
000641 CCAGCCCCAC AAGACTAAGG AGAGAGAGCG CAGCGTGGTG GAGAGTGAGC TGTGCTGGGA CCATTGTTTC CGTAACCTCG 000720
000721 TTTTCTGTGT CCAGCTGACA CACCTTCAAA GTGGCATCAG GTCCTAAACT GTAGCTTGCA ATGTGCCTGT TTCCAGAAAC 000800
000801 CAAGGTGAAA GTGCTTTTAG ACAGTGTTCC CATGCAAGAG TCCCTTCCCA GCTTTTTTCT GGAAATGCAT GTTTCTCTGA 000880
000881 ACTCTGAGTC CCAAGAAAAA TCACTTGAGA CACCAAGAAA ATGGGGGAAG TGCTAAAATT GTGTGGGAAT TCAAGCTTAA 000960
000961 CAATAAACAT CAAGACATTT TTGATAAAAA TGAATCCACT GACATCGGGG AGGAGCAAGA GAACAGCACG CTGACACTGG 001040
001041 GTCAGAGGCT AAGACCGACA TTTCTGGGAA CCACTCCCGG AAGGGCACAG AGGAGACGCT TTCAGCCTCT CATCAGCCAG 001120
001121 CCTGGCCTGT AGCTGCTGCA CGTTATGAGT GTGTTCCTGG CATGACTGCT TCTAACAACT GGGTCTCGCT TGTTGCCCAG 001200
001201 GCTGTAGTGC ACTGGTGCAA TCATGGCTCA CTGCAGCCTT GACCTCCTGG ATCAAGGTAT CCTCCCACCT CTCAGCCTCC 001280
001281 CAAGCAGCTG GGACTATGGG TGCATGCCAC CACACCCAGC TAATTTTTGT ATTTATGGAG ATATGGGTCT CACCATGTTA 001360
001361 CCCAGGCTGG TCTTGAACTT CTGGGCTCAA GCCTTCTGCC TGCCCTGGCC TTCCAAAGCA TTGGAATTAC AGGCCTGAGC 001440
001441 CACTGTGCTA GGCCAGAGCC AACAGGACTT ACTGAGAAAT TATCTGAGAG AGAGGGGTCA AGGAAGACTC CCCCTGTTCA 001520
001521 ACCAAGCAAC GAGGTGAATG GTGCTGCTGC TTCCTGAGAT GGGGAAGACT GTAGAGGAAA CAAACCAGGA ACGACAAATC 001600
001601 AGTAATTTAG CTTTGAATAC ATTAGGTTTG AGATGGCTAG TCTGTACCCA AACAGACCAC ACTGTGGCAT CTGGGCAGCA 001680
001681 GGATCTGCAG AATCCAGCAG GATGGATGCT GATGCCAAGC TGAGTAGACA GTTGGGTCTG TGAGTCTAAA GCTCAGGGAA 001760
001761 GACCTCAGGG TCTGGGATAC AAATCTGGAG ATCATCACCC TGTCCATGAA AGCCAAGGGA ATGATGGAAG ATACTATGAG 001840
001841 AAAAAGTGAA GAGAGGAAAG AGAAGAGGTC CATGGAAGGA GACCTGGGAG AATCCAACCT TCGATTAGAT CAGGAAGAGG 001920
001921 AGAAGAATCC AGTAAAAAAC TCTGAGAAGT CTCTGGGAAG GAAGTCTTCC TTCCTTCCCC