Difference between revisions of "ENST00000415237.1"
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sequence = <dnaseq>GAATTATGCTTGAAGAAGGTTAATCTTATAATGGCATGCAGAGCGGAGCTGGGCAAGGCCAGAGGCTAAATATGGAGCCAGAAAGATACTGCAGAAAGTGAGCAAAAAGGATGAGTGGATGGCCTGGGGTGGAATCCGTGAAAAAGGGCAGATTGTCAGTCTCAGGAAATCAACAGGACTGAGTTCTAACTTCAGCTGGGCTACTATGCCCTGGGGAATCAGAAGATTCTCCCTAACATTGGAGTCCAAAGAAGAGGAGCCACCATCTCCTTAACTACAAAACAACTGAGAGAAGAAATGTCTCCCTTTAGTGCCAGTGAAGAGTTTTGCTTCTCTAGAACAACTGTTTATTTTTGATCTTATGAAACGCGTGACACTTGTAACTGATTTGCCTTCTTTTTGCTTGCTGCTAGAAATCTCAGAACCAAATTCGAGGTCATTTCTGAATGTGCTGGACTACACAGCATGAATTCTGTGTCCTCTCACCTCATTCATAGATACATTTTTTTATTCCTACCCATCTTTTCCTTTCCCCAGATTTTCCTATTGCTCTTTTATCATCTTGAGTAAAGAAGGTTAAACTATGAATAAAAAGTACAATCTCAATGACGAGTCAGGGAAAAGTAAGTTTTGGACTTCCATTTAGAGCCATTTATAGGTCAGCAATCTTTTGTCTCTGTGTCTTCTTTCTGCCCTGAACAACCAAGGCATCCTAGTCAGTCTCTCTTCATCTGCATACCACTTTAAAGAGCCCAGGGGTCTTCCAAGTACAGTCACTACTAAGAAAATGTCTTCAGTAAATTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAATGTAGTGGCACGATCTCAGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATCCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCACCTGCCACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTATTAGCCAGGATGGTCTTAATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCCCCGCGCCCAGCCTTCAGTAAAATTTTAATGCATGTTGCTTATCATTCTTTGTATTGTAAGCACCAATCCTTAATCTGTGCTGTGGTTTTTGTTCAGAAACATTTCTTTAAAAAAATTTCCCCAGACGCTCAGCCTTCATATTCTAATCTTTATTATTCTGAACTACCTACAAAGCTAAATATACCTTGTCTACATGCAGTGCTTATGTAACAATGGTGCTTATTTTGTTTTACATTGCTTCAACCTCTGACCAGAAACTTAGAGGACAGAATGCCCTGCTTTTACAAAAAATGTGGTGACCACAACGGTAACCTTATCTAATTGAGACCATTTTAGGAAGGAGGGGAGGAGATATTTTTACTGCAAAGACTGAGTCATAAGCCTTCATTTTTTACCCTGGGTTGTGCAGAAACTTTAAACTTTCTATATTATTTCATTTCTTCCATACCAGGACATTTATTTCCTATTCAGTGACAATCTTGATGTCTTCATCCTTCAAACTGCTCTCTAACATAGTTTCAAAATCCAAGCATTAAACATTATTAATGCTCAGGGGATGAATATGTTCATTACCTTTACTGTAGTGATGATTTCCTATGGCAAAATGTTAAATGATGTAAAGATAAAAATAATTATCATAGTTATTAATCATAGCAATAAAACTGGACTACCTAAAGCACA</dnaseq>| | sequence = <dnaseq>GAATTATGCTTGAAGAAGGTTAATCTTATAATGGCATGCAGAGCGGAGCTGGGCAAGGCCAGAGGCTAAATATGGAGCCAGAAAGATACTGCAGAAAGTGAGCAAAAAGGATGAGTGGATGGCCTGGGGTGGAATCCGTGAAAAAGGGCAGATTGTCAGTCTCAGGAAATCAACAGGACTGAGTTCTAACTTCAGCTGGGCTACTATGCCCTGGGGAATCAGAAGATTCTCCCTAACATTGGAGTCCAAAGAAGAGGAGCCACCATCTCCTTAACTACAAAACAACTGAGAGAAGAAATGTCTCCCTTTAGTGCCAGTGAAGAGTTTTGCTTCTCTAGAACAACTGTTTATTTTTGATCTTATGAAACGCGTGACACTTGTAACTGATTTGCCTTCTTTTTGCTTGCTGCTAGAAATCTCAGAACCAAATTCGAGGTCATTTCTGAATGTGCTGGACTACACAGCATGAATTCTGTGTCCTCTCACCTCATTCATAGATACATTTTTTTATTCCTACCCATCTTTTCCTTTCCCCAGATTTTCCTATTGCTCTTTTATCATCTTGAGTAAAGAAGGTTAAACTATGAATAAAAAGTACAATCTCAATGACGAGTCAGGGAAAAGTAAGTTTTGGACTTCCATTTAGAGCCATTTATAGGTCAGCAATCTTTTGTCTCTGTGTCTTCTTTCTGCCCTGAACAACCAAGGCATCCTAGTCAGTCTCTCTTCATCTGCATACCACTTTAAAGAGCCCAGGGGTCTTCCAAGTACAGTCACTACTAAGAAAATGTCTTCAGTAAATTTTTTTTTTTTTTTTTTGAGATGGAGTCTCGCTCTGTCGCCCAGGCTGGAATGTAGTGGCACGATCTCAGCTCACTGCAAGCTCTGCCTCCCGGGTTCACGCCATCCTCCTGCCTCAGCCTCCCAAGTAGCTGAGACTACAGGCACCTGCCACCATGCCCGGCTAATTTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACTGTATTAGCCAGGATGGTCTTAATCTCCTGACCTCATGATCCGCCCGCCTCGGCCTCCCAAAGTGCTGGGATTACAGGCGTGAGCCCCCGCGCCCAGCCTTCAGTAAAATTTTAATGCATGTTGCTTATCATTCTTTGTATTGTAAGCACCAATCCTTAATCTGTGCTGTGGTTTTTGTTCAGAAACATTTCTTTAAAAAAATTTCCCCAGACGCTCAGCCTTCATATTCTAATCTTTATTATTCTGAACTACCTACAAAGCTAAATATACCTTGTCTACATGCAGTGCTTATGTAACAATGGTGCTTATTTTGTTTTACATTGCTTCAACCTCTGACCAGAAACTTAGAGGACAGAATGCCCTGCTTTTACAAAAAATGTGGTGACCACAACGGTAACCTTATCTAATTGAGACCATTTTAGGAAGGAGGGGAGGAGATATTTTTACTGCAAAGACTGAGTCATAAGCCTTCATTTTTTACCCTGGGTTGTGCAGAAACTTTAAACTTTCTATATTATTTCATTTCTTCCATACCAGGACATTTATTTCCTATTCAGTGACAATCTTGATGTCTTCATCCTTCAAACTGCTCTCTAACATAGTTTCAAAATCCAAGCATTAAACATTATTAATGCTCAGGGGATGAATATGTTCATTACCTTTACTGTAGTGATGATTTCCTATGGCAAAATGTTAAATGATGTAAAGATAAAAATAATTATCATAGTTATTAATCATAGCAATAAAACTGGACTACCTAAAGCACA</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intronic(AS)]][[Category:lnc-C7orf11-3]] | + | [[Category:Intronic(AS)]][[Category:lnc-C7orf11-3]][[Category:NONHSAG047425]] |
Revision as of 07:32, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000415237.1 |
Source |
Gencode19 |
Same with |
lnc-C7orf11-3:1,NONHSAT120251 |
Classification |
intronic(AS) |
Length |
1771 nt |
Genomic location |
chr7-:40577726..40586527 |
Exon number |
2 |
Exons |
40577726..40579281,40586313..40586527 |
Genome context |
|
Sequence |
000001 GAATTATGCT TGAAGAAGGT TAATCTTATA ATGGCATGCA GAGCGGAGCT GGGCAAGGCC AGAGGCTAAA TATGGAGCCA 000080
000081 GAAAGATACT GCAGAAAGTG AGCAAAAAGG ATGAGTGGAT GGCCTGGGGT GGAATCCGTG AAAAAGGGCA GATTGTCAGT 000160 000161 CTCAGGAAAT CAACAGGACT GAGTTCTAAC TTCAGCTGGG CTACTATGCC CTGGGGAATC AGAAGATTCT CCCTAACATT 000240 000241 GGAGTCCAAA GAAGAGGAGC CACCATCTCC TTAACTACAA AACAACTGAG AGAAGAAATG TCTCCCTTTA GTGCCAGTGA 000320 000321 AGAGTTTTGC TTCTCTAGAA CAACTGTTTA TTTTTGATCT TATGAAACGC GTGACACTTG TAACTGATTT GCCTTCTTTT 000400 000401 TGCTTGCTGC TAGAAATCTC AGAACCAAAT TCGAGGTCAT TTCTGAATGT GCTGGACTAC ACAGCATGAA TTCTGTGTCC 000480 000481 TCTCACCTCA TTCATAGATA CATTTTTTTA TTCCTACCCA TCTTTTCCTT TCCCCAGATT TTCCTATTGC TCTTTTATCA 000560 000561 TCTTGAGTAA AGAAGGTTAA ACTATGAATA AAAAGTACAA TCTCAATGAC GAGTCAGGGA AAAGTAAGTT TTGGACTTCC 000640 000641 ATTTAGAGCC ATTTATAGGT CAGCAATCTT TTGTCTCTGT GTCTTCTTTC TGCCCTGAAC AACCAAGGCA TCCTAGTCAG 000720 000721 TCTCTCTTCA TCTGCATACC ACTTTAAAGA GCCCAGGGGT CTTCCAAGTA CAGTCACTAC TAAGAAAATG TCTTCAGTAA 000800 000801 ATTTTTTTTT TTTTTTTTTG AGATGGAGTC TCGCTCTGTC GCCCAGGCTG GAATGTAGTG GCACGATCTC AGCTCACTGC 000880 000881 AAGCTCTGCC TCCCGGGTTC ACGCCATCCT CCTGCCTCAG CCTCCCAAGT AGCTGAGACT ACAGGCACCT GCCACCATGC 000960 000961 CCGGCTAATT TTTTTTGTAT TTTTAGTAGA GACGGGGTTT CACTGTATTA GCCAGGATGG TCTTAATCTC CTGACCTCAT 001040 001041 GATCCGCCCG CCTCGGCCTC CCAAAGTGCT GGGATTACAG GCGTGAGCCC CCGCGCCCAG CCTTCAGTAA AATTTTAATG 001120 001121 CATGTTGCTT ATCATTCTTT GTATTGTAAG CACCAATCCT TAATCTGTGC TGTGGTTTTT GTTCAGAAAC ATTTCTTTAA 001200 001201 AAAAATTTCC CCAGACGCTC AGCCTTCATA TTCTAATCTT TATTATTCTG AACTACCTAC AAAGCTAAAT ATACCTTGTC 001280 001281 TACATGCAGT GCTTATGTAA CAATGGTGCT TATTTTGTTT TACATTGCTT CAACCTCTGA CCAGAAACTT AGAGGACAGA 001360 001361 ATGCCCTGCT TTTACAAAAA ATGTGGTGAC CACAACGGTA ACCTTATCTA ATTGAGACCA TTTTAGGAAG GAGGGGAGGA 001440 001441 GATATTTTTA CTGCAAAGAC TGAGTCATAA GCCTTCATTT TTTACCCTGG GTTGTGCAGA AACTTTAAAC TTTCTATATT 001520 001521 ATTTCATTTC TTCCATACCA GGACATTTAT TTCCTATTCA GTGACAATCT TGATGTCTTC ATCCTTCAAA CTGCTCTCTA 001600 001601 ACATAGTTTC AAAATCCAAG CATTAAACAT TATTAATGCT CAGGGGATGA ATATGTTCAT TACCTTTACT GTAGTGATGA 001680 001681 TTTCCTATGG CAAAATGTTA AATGATGTAA AGATAAAAAT AATTATCATA GTTATTAATC ATAGCAATAA AACTGGACTA 001760 001761 CCTAAAGCAC A |
Predicted Small Protein
Name | ENST00000415237.1_smProtein_605:697 |
Length | 31 |
Molecular weight | 3400.0868 |
Aromaticity | 0.2 |
Instability index | 41.6433333333 |
Isoelectric point | 9.49810791016 |
Runs | 6 |
Runs residual | 0.00225225225225 |
Runs probability | 0.041423776718 |
Amino acid sequence | MTSQGKVSFGLPFRAIYRSAIFCLCVFFLP |
Secondary structure | LLLLLEEELLLLHHHHHHHHHHEEEEEELL |
PRMN | LLLLLLLLLLLLHHHHHHHHHHHHHHHHHH |
PiMo | i????????????????????????????? |