Difference between revisions of "NONHSAT028158"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
| Line 42: | Line 42: | ||
sequence = <dnaseq>CCTTGACTGCAAAGGGCGGCACGCAGCTGATGTAATGGTCGCTTAAGTGTTCACAAATGGCCTGAACACCCTGTCCTACCTGGTCCTACCTGGATGCTGGCCTCAGTAAGCTCCTGGGCTCATTGAAGATGAACCTAGCAGTAGTATTTACaccacttgttgtgtgcccactgtgggcccggcgccatgccgagtgctctaTGGATGTGaggagaaacggaggcccagaaagcagaaatgatgtgttaagatcactcatcaagctgatggtacagagcctgacctcgtgatctacccgcctcagcctccgaaagtgctgggattagaggtgtgagccaccgtacccagcTGAGTTTCCAAATATTTCTGATTTCACCAGCGGGGGAAGACTGGCAGGCTCCTATATCCTCGAAGTATCCTGCCATGAGATGCCTGCAGAGTGGGGAATGGCATCACCTTTCCAACCCTGTGCAGCACCCAGTGCGAGCTGCTTATTAGTGGGAACTGGAGAGGAAGAGGAGGAAAAGGAGGACCCATGGCCATGGCTTTTTCTGTCCTTGTAACCCTCAACTGATATGTATCCCATACTTCTTGGTTGGGCAGAGGGGAGAGCAGAGGTTGACAGGTCACATTTCCCTCAGTTTTCCATCCTTCCTTCAGTGCTGGGAGAGAAAAGCATACGACATAGACAGGGAGGTCAAGCTCCACCACGCAGATGAGGTGCAGGCCACCAGTCTTCCTCTGCCACATCTCTTTCTGAAAAGGTAACCCTGCACCGCCTTCCCATTGGCTGCCACCTTGCATCCCCTCATGACTGAGTAAGCCAAGCTTTGTTGGCCGCACCTGCCAAGCCACAGGGTGCCTCAGGCTTGGAGCATCCCGGAGCCAGTTACAACCCAAGACTTCAGCCTTCTGGAAGGTGTTGGGTCAGCCACCCTGAAGGACGATCCTGCCCAAGTGACATGCTTTGCTCTTCCTTCTCACCCAGGACTTCACATTCACCCTTGCAATCCATGTGGGGACACTGTTGGATAGGAGGCGTGGTCCCAGCGTGGTCTCCCTGTCTGGGCCTCTGCCTATGCCAAATGTTTGCCTTACGCTGCACACTCAAGAGGTTCCATGTATACAGATGGGAATTCCAGAGCTACAGAAAAGGCAGCAAGCACCATGATTTAAGCTAACCAGTGTGGATTCACACCTTCCTCTCTCTCTATCAGTGGCAGAACTACCAGCTAGAGTAAGAAGTGGTTGATCCAGGACCTAAACATTCTGGAAACTCTTGCCCACTTCTGGGAGAAATGACCCAATCCATAGTACTAAGCACACCTTAACTTTCGTAGGACGCAGGCAAGTTGTcataccgtgtgcctaaatatagaaaaatgatccactggactaataaagtgttaaataaaatatgtcctgactgtctactttgacaacatactttcataatgacaaaacttaaaaatgtataaagctatggtttttatatagttgaaaattgacaaaac</dnaseq>| | sequence = <dnaseq>CCTTGACTGCAAAGGGCGGCACGCAGCTGATGTAATGGTCGCTTAAGTGTTCACAAATGGCCTGAACACCCTGTCCTACCTGGTCCTACCTGGATGCTGGCCTCAGTAAGCTCCTGGGCTCATTGAAGATGAACCTAGCAGTAGTATTTACaccacttgttgtgtgcccactgtgggcccggcgccatgccgagtgctctaTGGATGTGaggagaaacggaggcccagaaagcagaaatgatgtgttaagatcactcatcaagctgatggtacagagcctgacctcgtgatctacccgcctcagcctccgaaagtgctgggattagaggtgtgagccaccgtacccagcTGAGTTTCCAAATATTTCTGATTTCACCAGCGGGGGAAGACTGGCAGGCTCCTATATCCTCGAAGTATCCTGCCATGAGATGCCTGCAGAGTGGGGAATGGCATCACCTTTCCAACCCTGTGCAGCACCCAGTGCGAGCTGCTTATTAGTGGGAACTGGAGAGGAAGAGGAGGAAAAGGAGGACCCATGGCCATGGCTTTTTCTGTCCTTGTAACCCTCAACTGATATGTATCCCATACTTCTTGGTTGGGCAGAGGGGAGAGCAGAGGTTGACAGGTCACATTTCCCTCAGTTTTCCATCCTTCCTTCAGTGCTGGGAGAGAAAAGCATACGACATAGACAGGGAGGTCAAGCTCCACCACGCAGATGAGGTGCAGGCCACCAGTCTTCCTCTGCCACATCTCTTTCTGAAAAGGTAACCCTGCACCGCCTTCCCATTGGCTGCCACCTTGCATCCCCTCATGACTGAGTAAGCCAAGCTTTGTTGGCCGCACCTGCCAAGCCACAGGGTGCCTCAGGCTTGGAGCATCCCGGAGCCAGTTACAACCCAAGACTTCAGCCTTCTGGAAGGTGTTGGGTCAGCCACCCTGAAGGACGATCCTGCCCAAGTGACATGCTTTGCTCTTCCTTCTCACCCAGGACTTCACATTCACCCTTGCAATCCATGTGGGGACACTGTTGGATAGGAGGCGTGGTCCCAGCGTGGTCTCCCTGTCTGGGCCTCTGCCTATGCCAAATGTTTGCCTTACGCTGCACACTCAAGAGGTTCCATGTATACAGATGGGAATTCCAGAGCTACAGAAAAGGCAGCAAGCACCATGATTTAAGCTAACCAGTGTGGATTCACACCTTCCTCTCTCTCTATCAGTGGCAGAACTACCAGCTAGAGTAAGAAGTGGTTGATCCAGGACCTAAACATTCTGGAAACTCTTGCCCACTTCTGGGAGAAATGACCCAATCCATAGTACTAAGCACACCTTAACTTTCGTAGGACGCAGGCAAGTTGTcataccgtgtgcctaaatatagaaaaatgatccactggactaataaagtgttaaataaaatatgtcctgactgtctactttgacaacatactttcataatgacaaaacttaaaaatgtataaagctatggtttttatatagttgaaaattgacaaaac</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG011118]] |
Revision as of 07:52, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
| Transcript ID |
NONHSAT028158 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
1514 nt |
| Genomic location |
chr12+:50318239..50324205 |
| Exon number |
5 |
| Exons |
50318239..50318296,50318718..50318870,50319863..50319928,50322795..50323326,50323501..50324205 |
| Genome context |
|
| Sequence |
000001 CCTTGACTGC AAAGGGCGGC ACGCAGCTGA TGTAATGGTC GCTTAAGTGT TCACAAATGG CCTGAACACC CTGTCCTACC 000080
000081 TGGTCCTACC TGGATGCTGG CCTCAGTAAG CTCCTGGGCT CATTGAAGAT GAACCTAGCA GTAGTATTTA Caccacttgt 000160 000161 tgtgtgccca ctgtgggccc ggcgccatgc cgagtgctct aTGGATGTGa ggagaaacgg aggcccagaa agcagaaatg 000240 000241 atgtgttaag atcactcatc aagctgatgg tacagagcct gacctcgtga tctacccgcc tcagcctccg aaagtgctgg 000320 000321 gattagaggt gtgagccacc gtacccagcT GAGTTTCCAA ATATTTCTGA TTTCACCAGC GGGGGAAGAC TGGCAGGCTC 000400 000401 CTATATCCTC GAAGTATCCT GCCATGAGAT GCCTGCAGAG TGGGGAATGG CATCACCTTT CCAACCCTGT GCAGCACCCA 000480 000481 GTGCGAGCTG CTTATTAGTG GGAACTGGAG AGGAAGAGGA GGAAAAGGAG GACCCATGGC CATGGCTTTT TCTGTCCTTG 000560 000561 TAACCCTCAA CTGATATGTA TCCCATACTT CTTGGTTGGG CAGAGGGGAG AGCAGAGGTT GACAGGTCAC ATTTCCCTCA 000640 000641 GTTTTCCATC CTTCCTTCAG TGCTGGGAGA GAAAAGCATA CGACATAGAC AGGGAGGTCA AGCTCCACCA CGCAGATGAG 000720 000721 GTGCAGGCCA CCAGTCTTCC TCTGCCACAT CTCTTTCTGA AAAGGTAACC CTGCACCGCC TTCCCATTGG CTGCCACCTT 000800 000801 GCATCCCCTC ATGACTGAGT AAGCCAAGCT TTGTTGGCCG CACCTGCCAA GCCACAGGGT GCCTCAGGCT TGGAGCATCC 000880 000881 CGGAGCCAGT TACAACCCAA GACTTCAGCC TTCTGGAAGG TGTTGGGTCA GCCACCCTGA AGGACGATCC TGCCCAAGTG 000960 000961 ACATGCTTTG CTCTTCCTTC TCACCCAGGA CTTCACATTC ACCCTTGCAA TCCATGTGGG GACACTGTTG GATAGGAGGC 001040 001041 GTGGTCCCAG CGTGGTCTCC CTGTCTGGGC CTCTGCCTAT GCCAAATGTT TGCCTTACGC TGCACACTCA AGAGGTTCCA 001120 001121 TGTATACAGA TGGGAATTCC AGAGCTACAG AAAAGGCAGC AAGCACCATG ATTTAAGCTA ACCAGTGTGG ATTCACACCT 001200 001201 TCCTCTCTCT CTATCAGTGG CAGAACTACC AGCTAGAGTA AGAAGTGGTT GATCCAGGAC CTAAACATTC TGGAAACTCT 001280 001281 TGCCCACTTC TGGGAGAAAT GACCCAATCC ATAGTACTAA GCACACCTTA ACTTTCGTAG GACGCAGGCA AGTTGTcata 001360 001361 ccgtgtgcct aaatatagaa aaatgatcca ctggactaat aaagtgttaa ataaaatatg tcctgactgt ctactttgac 001440 001441 aacatacttt cataatgaca aaacttaaaa atgtataaag ctatggtttt tatatagttg aaaattgaca aaac |
Predicted Small Protein
| Name | NONHSAT028158_smProtein_962:1180 |
| Length | 73 |
| Molecular weight | 8374.7381 |
| Aromaticity | 0.138888888889 |
| Instability index | 70.2819444444 |
| Isoelectric point | 9.33587646484 |
| Runs | 11 |
| Runs residual | 0.0118613138686 |
| Runs probability | 0.0456954280484 |
| Amino acid sequence | MLCSSFSPRTSHSPLQSMWGHCWIGGVVPAWSPCLGLCLCQMFALRCTLKRFHVYRWEFQ SYRKGSKHHDLS |
| Secondary structure | LLLLLLLLLLLLLHHHLLLLLEEELLEELLLLHHHHHHHHHHHHHHHHHHHLEEEEEEEE ELLLLLLLLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLL LLLLLLLLLLLL |
| PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiii iiiiiiiiiiii |
