Difference between revisions of "NONHSAT079632"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
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sequence = <dnaseq>CAGGACCCCAGGCAAGCACCGTGGGTTGGGAACCAACCTGGTGGAAAACTAAAATCAGCCCATCTTCAGGTCTACCGCGGCGGATGAAGCCTCACGCAGAACAGATACAGTTGCTTGGCAAGCAGGGGGCTGCAGTTCTGCTCCACCTCTGGACTCCTGCCCCACAGGGGAGAAACCCTTTTTGAAAGCACCTGTGACATAGTTCAAGATCACCAATGTCGGGCGAGGGTAGGACATGCACCCTGGAGTCCAGCCATACCTCAGCACAGCCCTCCTGCCCACATCGCCAAGGCCCTGTCAGAGGCATGACAAACAGCTTGGCTGATGGCTTATAATGTCAAAGATGATGGAAACAGGGAGGCGACGGCTGAAAGAATGGGTTGGGGACGCTTGTCATAACTTTATTTGTGGGAGacacactgtctaccttgattctccaaactgccctaaaaagaacatacatttttacagaggaggaaaccgaagcttgaagaggagaaatgacatatccaagtgccccatgaaGGAGGACAAAAGCCCAGGAGGCAGCTGTCGCATCATCCTCTTCCTTTCCCTGCACATCCGCTACATCCCTTGGTCCTACTGATTTCACCTGCCGTTTCCTCTATGTCCAACGTTACTCAGTCCAAGTCCCCAAGCATTTCCTGCCTCGACAGTTATTCTACCCCATCCTCCCCTGCTG</dnaseq>| | sequence = <dnaseq>CAGGACCCCAGGCAAGCACCGTGGGTTGGGAACCAACCTGGTGGAAAACTAAAATCAGCCCATCTTCAGGTCTACCGCGGCGGATGAAGCCTCACGCAGAACAGATACAGTTGCTTGGCAAGCAGGGGGCTGCAGTTCTGCTCCACCTCTGGACTCCTGCCCCACAGGGGAGAAACCCTTTTTGAAAGCACCTGTGACATAGTTCAAGATCACCAATGTCGGGCGAGGGTAGGACATGCACCCTGGAGTCCAGCCATACCTCAGCACAGCCCTCCTGCCCACATCGCCAAGGCCCTGTCAGAGGCATGACAAACAGCTTGGCTGATGGCTTATAATGTCAAAGATGATGGAAACAGGGAGGCGACGGCTGAAAGAATGGGTTGGGGACGCTTGTCATAACTTTATTTGTGGGAGacacactgtctaccttgattctccaaactgccctaaaaagaacatacatttttacagaggaggaaaccgaagcttgaagaggagaaatgacatatccaagtgccccatgaaGGAGGACAAAAGCCCAGGAGGCAGCTGTCGCATCATCCTCTTCCTTTCCCTGCACATCCGCTACATCCCTTGGTCCTACTGATTTCACCTGCCGTTTCCTCTATGTCCAACGTTACTCAGTCCAAGTCCCCAAGCATTTCCTGCCTCGACAGTTATTCTACCCCATCCTCCCCTGCTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG031735]] |
Revision as of 08:05, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT079632 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
703 nt |
| Genomic location |
chr20+:36305354..36310651 |
| Exon number |
4 |
| Exons |
36305354..36305488,36306742..36307020,36307318..36307428,36310474..36310651 |
| Genome context |
|
| Sequence |
000001 CAGGACCCCA GGCAAGCACC GTGGGTTGGG AACCAACCTG GTGGAAAACT AAAATCAGCC CATCTTCAGG TCTACCGCGG 000080
000081 CGGATGAAGC CTCACGCAGA ACAGATACAG TTGCTTGGCA AGCAGGGGGC TGCAGTTCTG CTCCACCTCT GGACTCCTGC 000160 000161 CCCACAGGGG AGAAACCCTT TTTGAAAGCA CCTGTGACAT AGTTCAAGAT CACCAATGTC GGGCGAGGGT AGGACATGCA 000240 000241 CCCTGGAGTC CAGCCATACC TCAGCACAGC CCTCCTGCCC ACATCGCCAA GGCCCTGTCA GAGGCATGAC AAACAGCTTG 000320 000321 GCTGATGGCT TATAATGTCA AAGATGATGG AAACAGGGAG GCGACGGCTG AAAGAATGGG TTGGGGACGC TTGTCATAAC 000400 000401 TTTATTTGTG GGAGacacac tgtctacctt gattctccaa actgccctaa aaagaacata catttttaca gaggaggaaa 000480 000481 ccgaagcttg aagaggagaa atgacatatc caagtgcccc atgaaGGAGG ACAAAAGCCC AGGAGGCAGC TGTCGCATCA 000560 000561 TCCTCTTCCT TTCCCTGCAC ATCCGCTACA TCCCTTGGTC CTACTGATTT CACCTGCCGT TTCCTCTATG TCCAACGTTA 000640 000641 CTCAGTCCAA GTCCCCAAGC ATTTCCTGCC TCGACAGTTA TTCTACCCCA TCCTCCCCTG CTG |
Predicted Small Protein
| Name | NONHSAT079632_smProtein_215:334 |
| Length | 40 |
| Molecular weight | 4057.4463 |
| Aromaticity | 0.0 |
| Instability index | 59.4846153846 |
| Isoelectric point | 6.69195556641 |
| Runs | 5 |
| Runs residual | 0.0405354449472 |
| Runs probability | 0.0377495142202 |
| Amino acid sequence | MSGEGRTCTLESSHTSAQPSCPHRQGPVRGMTNSLADGL |
| Secondary structure | LLLLLEEEEEELLLLLLLLLLLLLLLLLLLLLHHHHLLL |
| PRMN | - |
| PiMo | - |
