Difference between revisions of "NONHSAT004819"

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sequence = <dnaseq>GGGCTACTGGGCTGCGGAGACCAGAGCCCGGCTCCACTGAAGAAACCCGCCGGCTGCTGGGGCAGGGCGGCGAAAGGTCAGTCGGCCGAGAGGAGTCCGTGGAGCCACCGTTTCATAGCCTCAGGGAAAGGATCGGGCGTGCTCACGAGCCCTCTAACCCATGGCTTAAACACCCGCTTCCTAAGCCTGGGTAAGTGCAGTAGCTCTTCGCTCGAGAGGAGCCACGTGGAAGAGAGTCGGGAGGGGCCCTGCGCCCTACTCCTCCTCTCCAGAAACAGGGAGGGCTGGGAAGGATTTTCCTGATTTGTCCCCGGATTTGGCCGAGTGCACAGATTTTAATTCCAGTCTTCTCATCCTCCTGTAGTTCAACTAGGTGTCTTCCTGGTGAAGCGTGAGATTGGCAAACCCAGCAGTGAGTGTGCTTCTGATTTCCCAACAAGGCAATGACTCCTTGGGTTTGTCCCCAAGACCTTATGCCTGGAGTGCCCCAAGGATGTTTCAGTCACCCTCAGTGTCAGGAATCCCAGACCTTCCTGTACCTAAAGAAGTGACCTTTAATAGTGCTCAGGGATTTCAGACCTCTCAAGTGTTTCTGCCGGGGGAATTCTTATAAAGCTGTTGGTTACATGTAATTAGAAATAGGGAAGATTTGTTTTGACTGAAAATGCTCTTCCCAAGGTGACCTCATCCAAGTTAAAAAAGACAGCTGTCATTGCTTTTCTTAGCAGGCAGTGTTGGTTACTCAGAATTTTCCTGTTGCCTCCCCGACAATGCCCAACTCCGCTTCCTTGAACCTTGGCTTTTTTTCATTCCCAGGTTCCATCCACCTTTTTGCACTTCCTATCTATAAACTCTTCGTGGCTGTGTTTTATCCCCTCTCATTACGTTGATCTATT</dnaseq>|
 
sequence = <dnaseq>GGGCTACTGGGCTGCGGAGACCAGAGCCCGGCTCCACTGAAGAAACCCGCCGGCTGCTGGGGCAGGGCGGCGAAAGGTCAGTCGGCCGAGAGGAGTCCGTGGAGCCACCGTTTCATAGCCTCAGGGAAAGGATCGGGCGTGCTCACGAGCCCTCTAACCCATGGCTTAAACACCCGCTTCCTAAGCCTGGGTAAGTGCAGTAGCTCTTCGCTCGAGAGGAGCCACGTGGAAGAGAGTCGGGAGGGGCCCTGCGCCCTACTCCTCCTCTCCAGAAACAGGGAGGGCTGGGAAGGATTTTCCTGATTTGTCCCCGGATTTGGCCGAGTGCACAGATTTTAATTCCAGTCTTCTCATCCTCCTGTAGTTCAACTAGGTGTCTTCCTGGTGAAGCGTGAGATTGGCAAACCCAGCAGTGAGTGTGCTTCTGATTTCCCAACAAGGCAATGACTCCTTGGGTTTGTCCCCAAGACCTTATGCCTGGAGTGCCCCAAGGATGTTTCAGTCACCCTCAGTGTCAGGAATCCCAGACCTTCCTGTACCTAAAGAAGTGACCTTTAATAGTGCTCAGGGATTTCAGACCTCTCAAGTGTTTCTGCCGGGGGAATTCTTATAAAGCTGTTGGTTACATGTAATTAGAAATAGGGAAGATTTGTTTTGACTGAAAATGCTCTTCCCAAGGTGACCTCATCCAAGTTAAAAAAGACAGCTGTCATTGCTTTTCTTAGCAGGCAGTGTTGGTTACTCAGAATTTTCCTGTTGCCTCCCCGACAATGCCCAACTCCGCTTCCTTGAACCTTGGCTTTTTTTCATTCCCAGGTTCCATCCACCTTTTTGCACTTCCTATCTATAAACTCTTCGTGGCTGTGTTTTATCCCCTCTCATTACGTTGATCTATT</dnaseq>|
 
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[[Category:Intergenic]]
+
[[Category:Intergenic]][[Category:NONHSAG002228]]

Revision as of 08:15, 13 October 2014

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT004819

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

896 nt

Genomic location

chr1+:101491428..101492323

Exon number

1

Exons

101491428..101492323

Genome context

Sequence
000001 GGGCTACTGG GCTGCGGAGA CCAGAGCCCG GCTCCACTGA AGAAACCCGC CGGCTGCTGG GGCAGGGCGG CGAAAGGTCA 000080
000081 GTCGGCCGAG AGGAGTCCGT GGAGCCACCG TTTCATAGCC TCAGGGAAAG GATCGGGCGT GCTCACGAGC CCTCTAACCC 000160
000161 ATGGCTTAAA CACCCGCTTC CTAAGCCTGG GTAAGTGCAG TAGCTCTTCG CTCGAGAGGA GCCACGTGGA AGAGAGTCGG 000240
000241 GAGGGGCCCT GCGCCCTACT CCTCCTCTCC AGAAACAGGG AGGGCTGGGA AGGATTTTCC TGATTTGTCC CCGGATTTGG 000320
000321 CCGAGTGCAC AGATTTTAAT TCCAGTCTTC TCATCCTCCT GTAGTTCAAC TAGGTGTCTT CCTGGTGAAG CGTGAGATTG 000400
000401 GCAAACCCAG CAGTGAGTGT GCTTCTGATT TCCCAACAAG GCAATGACTC CTTGGGTTTG TCCCCAAGAC CTTATGCCTG 000480
000481 GAGTGCCCCA AGGATGTTTC AGTCACCCTC AGTGTCAGGA ATCCCAGACC TTCCTGTACC TAAAGAAGTG ACCTTTAATA 000560
000561 GTGCTCAGGG ATTTCAGACC TCTCAAGTGT TTCTGCCGGG GGAATTCTTA TAAAGCTGTT GGTTACATGT AATTAGAAAT 000640
000641 AGGGAAGATT TGTTTTGACT GAAAATGCTC TTCCCAAGGT GACCTCATCC AAGTTAAAAA AGACAGCTGT CATTGCTTTT 000720
000721 CTTAGCAGGC AGTGTTGGTT ACTCAGAATT TTCCTGTTGC CTCCCCGACA ATGCCCAACT CCGCTTCCTT GAACCTTGGC 000800
000801 TTTTTTTCAT TCCCAGGTTC CATCCACCTT TTTGCACTTC CTATCTATAA ACTCTTCGTG GCTGTGTTTT ATCCCCTCTC 000880
000881 ATTACGTTGA TCTATT
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Predicted Small Protein

Name NONHSAT004819_smProtein_770:889
Length 40
Molecular weight 4376.167
Aromaticity 0.205128205128
Instability index 48.3361538462
Isoelectric point 9.69720458984
Runs 4
Runs residual 0.0661764705882
Runs probability 0.0637475711004
Amino acid sequence MPNSASLNLGFFSFPGSIHLFALPIYKLFVAVFYPLSLR
Secondary structure LLLLLLLLLLLLLLLLHHHHHHHHHHHHEEEEEEELLLL
PRMN LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLL
PiMo oooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiii