Difference between revisions of "NONHSAT004819"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGGCTACTGGGCTGCGGAGACCAGAGCCCGGCTCCACTGAAGAAACCCGCCGGCTGCTGGGGCAGGGCGGCGAAAGGTCAGTCGGCCGAGAGGAGTCCGTGGAGCCACCGTTTCATAGCCTCAGGGAAAGGATCGGGCGTGCTCACGAGCCCTCTAACCCATGGCTTAAACACCCGCTTCCTAAGCCTGGGTAAGTGCAGTAGCTCTTCGCTCGAGAGGAGCCACGTGGAAGAGAGTCGGGAGGGGCCCTGCGCCCTACTCCTCCTCTCCAGAAACAGGGAGGGCTGGGAAGGATTTTCCTGATTTGTCCCCGGATTTGGCCGAGTGCACAGATTTTAATTCCAGTCTTCTCATCCTCCTGTAGTTCAACTAGGTGTCTTCCTGGTGAAGCGTGAGATTGGCAAACCCAGCAGTGAGTGTGCTTCTGATTTCCCAACAAGGCAATGACTCCTTGGGTTTGTCCCCAAGACCTTATGCCTGGAGTGCCCCAAGGATGTTTCAGTCACCCTCAGTGTCAGGAATCCCAGACCTTCCTGTACCTAAAGAAGTGACCTTTAATAGTGCTCAGGGATTTCAGACCTCTCAAGTGTTTCTGCCGGGGGAATTCTTATAAAGCTGTTGGTTACATGTAATTAGAAATAGGGAAGATTTGTTTTGACTGAAAATGCTCTTCCCAAGGTGACCTCATCCAAGTTAAAAAAGACAGCTGTCATTGCTTTTCTTAGCAGGCAGTGTTGGTTACTCAGAATTTTCCTGTTGCCTCCCCGACAATGCCCAACTCCGCTTCCTTGAACCTTGGCTTTTTTTCATTCCCAGGTTCCATCCACCTTTTTGCACTTCCTATCTATAAACTCTTCGTGGCTGTGTTTTATCCCCTCTCATTACGTTGATCTATT</dnaseq>| | sequence = <dnaseq>GGGCTACTGGGCTGCGGAGACCAGAGCCCGGCTCCACTGAAGAAACCCGCCGGCTGCTGGGGCAGGGCGGCGAAAGGTCAGTCGGCCGAGAGGAGTCCGTGGAGCCACCGTTTCATAGCCTCAGGGAAAGGATCGGGCGTGCTCACGAGCCCTCTAACCCATGGCTTAAACACCCGCTTCCTAAGCCTGGGTAAGTGCAGTAGCTCTTCGCTCGAGAGGAGCCACGTGGAAGAGAGTCGGGAGGGGCCCTGCGCCCTACTCCTCCTCTCCAGAAACAGGGAGGGCTGGGAAGGATTTTCCTGATTTGTCCCCGGATTTGGCCGAGTGCACAGATTTTAATTCCAGTCTTCTCATCCTCCTGTAGTTCAACTAGGTGTCTTCCTGGTGAAGCGTGAGATTGGCAAACCCAGCAGTGAGTGTGCTTCTGATTTCCCAACAAGGCAATGACTCCTTGGGTTTGTCCCCAAGACCTTATGCCTGGAGTGCCCCAAGGATGTTTCAGTCACCCTCAGTGTCAGGAATCCCAGACCTTCCTGTACCTAAAGAAGTGACCTTTAATAGTGCTCAGGGATTTCAGACCTCTCAAGTGTTTCTGCCGGGGGAATTCTTATAAAGCTGTTGGTTACATGTAATTAGAAATAGGGAAGATTTGTTTTGACTGAAAATGCTCTTCCCAAGGTGACCTCATCCAAGTTAAAAAAGACAGCTGTCATTGCTTTTCTTAGCAGGCAGTGTTGGTTACTCAGAATTTTCCTGTTGCCTCCCCGACAATGCCCAACTCCGCTTCCTTGAACCTTGGCTTTTTTTCATTCCCAGGTTCCATCCACCTTTTTGCACTTCCTATCTATAAACTCTTCGTGGCTGTGTTTTATCCCCTCTCATTACGTTGATCTATT</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG002228]] |
Revision as of 08:15, 13 October 2014
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Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT004819 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
896 nt |
Genomic location |
chr1+:101491428..101492323 |
Exon number |
1 |
Exons |
101491428..101492323 |
Genome context |
|
Sequence |
000001 GGGCTACTGG GCTGCGGAGA CCAGAGCCCG GCTCCACTGA AGAAACCCGC CGGCTGCTGG GGCAGGGCGG CGAAAGGTCA 000080
000081 GTCGGCCGAG AGGAGTCCGT GGAGCCACCG TTTCATAGCC TCAGGGAAAG GATCGGGCGT GCTCACGAGC CCTCTAACCC 000160 000161 ATGGCTTAAA CACCCGCTTC CTAAGCCTGG GTAAGTGCAG TAGCTCTTCG CTCGAGAGGA GCCACGTGGA AGAGAGTCGG 000240 000241 GAGGGGCCCT GCGCCCTACT CCTCCTCTCC AGAAACAGGG AGGGCTGGGA AGGATTTTCC TGATTTGTCC CCGGATTTGG 000320 000321 CCGAGTGCAC AGATTTTAAT TCCAGTCTTC TCATCCTCCT GTAGTTCAAC TAGGTGTCTT CCTGGTGAAG CGTGAGATTG 000400 000401 GCAAACCCAG CAGTGAGTGT GCTTCTGATT TCCCAACAAG GCAATGACTC CTTGGGTTTG TCCCCAAGAC CTTATGCCTG 000480 000481 GAGTGCCCCA AGGATGTTTC AGTCACCCTC AGTGTCAGGA ATCCCAGACC TTCCTGTACC TAAAGAAGTG ACCTTTAATA 000560 000561 GTGCTCAGGG ATTTCAGACC TCTCAAGTGT TTCTGCCGGG GGAATTCTTA TAAAGCTGTT GGTTACATGT AATTAGAAAT 000640 000641 AGGGAAGATT TGTTTTGACT GAAAATGCTC TTCCCAAGGT GACCTCATCC AAGTTAAAAA AGACAGCTGT CATTGCTTTT 000720 000721 CTTAGCAGGC AGTGTTGGTT ACTCAGAATT TTCCTGTTGC CTCCCCGACA ATGCCCAACT CCGCTTCCTT GAACCTTGGC 000800 000801 TTTTTTTCAT TCCCAGGTTC CATCCACCTT TTTGCACTTC CTATCTATAA ACTCTTCGTG GCTGTGTTTT ATCCCCTCTC 000880 000881 ATTACGTTGA TCTATT |
Predicted Small Protein
Name | NONHSAT004819_smProtein_770:889 |
Length | 40 |
Molecular weight | 4376.167 |
Aromaticity | 0.205128205128 |
Instability index | 48.3361538462 |
Isoelectric point | 9.69720458984 |
Runs | 4 |
Runs residual | 0.0661764705882 |
Runs probability | 0.0637475711004 |
Amino acid sequence | MPNSASLNLGFFSFPGSIHLFALPIYKLFVAVFYPLSLR |
Secondary structure | LLLLLLLLLLLLLLLLHHHHHHHHHHHHEEEEEEELLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLL |
PiMo | oooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiii |