Difference between revisions of "ENST00000606660.1"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>ACTGCAGGCTGGGGCTCCGCTCCCCGGCGGGAGCCCGCGCGTGGTTCCCAGCGAAGTCCCCGCGCGGCTGGGCCCAGCGTGAGTATTCTCCGCCCGCTGTCCTCCCCCTGGAGGCGGCAGCGCCCGTTTATTTGAGGCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGGGGGCAATTAGTCACCACCCCACGGCGCTGCTGAGGACAGCACGGCAGCAGACAAGTCAGGCCCATGAGGAAGAAGAGGCTTTGCACTGCTCTCCAGACAACTTTTCAAACAACAAGAGAGGATATTTGAGCACATTAGGTTTTGTGTCTTCATTCTGGGTACCTACTCTTCATATTATTCTACCAACTTAATACATAAACATATTTTTAGCACAATATGAACCTGTTCTATGTGTGTTTAAAAGCCTCCAGCAGCAACTTTTTTCTCTCCCACTGTCCAAAGTTGGGTTTTCCCCATCCCTTAAAAAACAAAACAAAAAAACCTTTCTTCACTCCAAATTGTCCCCCTGGTGTGTGGTTTTGGTCTTTCTCATTACTTCTTGCATCTTGCTACATGTTCTGCATTTGCTCAGAGCCACTGGGTGCTAAGGAATTTGGTCTGCTGCTCCTCTGGGAAAGTTTGGTAAGCTGGTACAAGGAGGTGATGAACAAGGCTAAATGAAAATCATACATAAACTTCCCAATATTTGTGAACATGTTCTTTAACATACCATACATAGTTTCTATGTATATGTAACATAGCAAAACAAACTTGCTAAGGTATAATTAATTGGTATGCATGCCTTCATAAATATTCACCATCAGAAGAAACCTAGAATGAAAGGTTGTGAAAGAACCCAGGAATGAGAAAGACTTTATTGACTAAAGGCCATGTCTATGTAGGGGCAACAATGAAGCTGTGGGTGAGCAAATGAAGCTTCATCAGGAGTTTAGTATCCTTATGTAGCATTACCTAAGAATGCTACCATAGTAAATTTCTGAAGTACTTTACCTGTTACAAAGAACGTTTGTAATCTCCTTTTCTTATTTGATCTTGCCCTGGCTTTAGTCAGGAACACCTGCTCAGTTAGAAATGTATTCGGTGGGTATGTACGCAGTTGGAGAATGTGCCCCAACACACGCCGCCTTTGGCCTGTATGTTGGAGTCCTAGAGAGGCAGACAATGTTGATGAGCTTGGTACCAGCATGGTGCGCCATTCATCCGGACACAATTTCTGATAAAGAGGGTCACAACTGGGAGAAACCTCAGATTCTACTTGCTTCTCTTCTCCACGTTATTAGACTTTTTTTCCCCTCTTGAATTTTATAAGCACACTCCTTTTAAAACAATTAATTAATAACGAGCACTGGGATTTGATGTAGAATTGCGTATTTGTAACTGCAATGGCACTGGTTTTCAACTACCCTGTAACAAGGAAGCAATTCTAACCAGCAAAAGAGGCAGACGTGTTTCTGTGCAACATCACAGGCGTGTGAAATTGTTCAGATATTGAGATATCAGGAGTGATATAAATTGGAAATTTAACCAAAAATATTTTCCATCAGTGAACAAAGCCGATTTTAAAGTGCCTCTTGCATTTTTCAGATCTTTCTCTTTCTTTTTCCCAAAGTCACATTGTAGTTTCTGATAAAGGAACACACTGGGAAAACTAAGCACATATTTAATCAATGAAATTTAAGGTGTAAAAATTCTGCATTTCTGACAAATTTAATGTTCACTTTTTTCTTGATTTAAATAGAGCATTCTAAAAATATTACCCCTATAGGGGATAAATTTTTATATGCATGTTATTTTTCTTTACAAAGTGTGGGCTAGTAAAGAGTGAAAAAGACCTTGGCTATTGTACTTATTTCTTGAAAGAAATAATAGCATCTTAATGACTGGATTCAAATCTCTGCTTATCACACAACTTCCGTACAGTTCAAAGAGAGGACTTGGATTGAATGAAAACAGAGAGCTGGGGCTTCCTACATTCCCCTGTGTTTGTGTTCATACAGAATATTTATGCAATATTCTGACTTGGCCATAATCTGTAATTCCTGCCTATTATTCTCAGTTGCAACTATAAATTCTAGATTAATGGTTATAATTTTGGTAAGGCATACATGAAAAGTTATATGTTCCTGCTTGAAAGGAGGATCATTAAATATTCATTATTACCACTCAAATTAGTTGTCATGCTCTGTGTAATAGTTACCCGTTATCATTTCACTAGTTTGGATTCAGCAGTAAGTGAACAGCAATATATAGCTCATAGCGCCAGAGGACTTTTTTTGTCGGGGAACAGGGAGAGAAATGATTTTAAAACCCATTTGACATATTTATGTTGACAAATTATTTAAAGGAATTACTGTGTTGTAATAAACATGTTTGTATGTTGGAATAGGATTGTGGCTAAATTTGCTTCTAGCTGTTTAATTACTCTTATTATGATTGTGAAAAACAGTGCTTCTTCAAGTAGTTCCAAGGAAAAAAATAGAAAATGGAAAAGTTGAGCTATTTCAGTCTTTTGCAGGTATCTAACCTTGCCATGAAAAAGCACTTTTCATTTTTGTAAGTAGATATTGAAATCTTGCTTTTTCAGCGAAGCTAGATTGTATAATTTATTAGTTTTCTCCACCTGGTAACACATCCTTAAGAAAAAAATTGCCAAAAGTAAAGCATGAGATGGATTTTAAAATAAATGTTGTGGATGAACAC</dnaseq>| | sequence = <dnaseq>ACTGCAGGCTGGGGCTCCGCTCCCCGGCGGGAGCCCGCGCGTGGTTCCCAGCGAAGTCCCCGCGCGGCTGGGCCCAGCGTGAGTATTCTCCGCCCGCTGTCCTCCCCCTGGAGGCGGCAGCGCCCGTTTATTTGAGGCTTCTAATGTGAGGAAAAACACGGAATGACAAGTGTGGGAAAGAGCAAGCACTAAATTACTGTCAGAAAAATAAACGGAGTAGCACAGTGCTGCTCGGTGATTTACGGGGGCAATTAGTCACCACCCCACGGCGCTGCTGAGGACAGCACGGCAGCAGACAAGTCAGGCCCATGAGGAAGAAGAGGCTTTGCACTGCTCTCCAGACAACTTTTCAAACAACAAGAGAGGATATTTGAGCACATTAGGTTTTGTGTCTTCATTCTGGGTACCTACTCTTCATATTATTCTACCAACTTAATACATAAACATATTTTTAGCACAATATGAACCTGTTCTATGTGTGTTTAAAAGCCTCCAGCAGCAACTTTTTTCTCTCCCACTGTCCAAAGTTGGGTTTTCCCCATCCCTTAAAAAACAAAACAAAAAAACCTTTCTTCACTCCAAATTGTCCCCCTGGTGTGTGGTTTTGGTCTTTCTCATTACTTCTTGCATCTTGCTACATGTTCTGCATTTGCTCAGAGCCACTGGGTGCTAAGGAATTTGGTCTGCTGCTCCTCTGGGAAAGTTTGGTAAGCTGGTACAAGGAGGTGATGAACAAGGCTAAATGAAAATCATACATAAACTTCCCAATATTTGTGAACATGTTCTTTAACATACCATACATAGTTTCTATGTATATGTAACATAGCAAAACAAACTTGCTAAGGTATAATTAATTGGTATGCATGCCTTCATAAATATTCACCATCAGAAGAAACCTAGAATGAAAGGTTGTGAAAGAACCCAGGAATGAGAAAGACTTTATTGACTAAAGGCCATGTCTATGTAGGGGCAACAATGAAGCTGTGGGTGAGCAAATGAAGCTTCATCAGGAGTTTAGTATCCTTATGTAGCATTACCTAAGAATGCTACCATAGTAAATTTCTGAAGTACTTTACCTGTTACAAAGAACGTTTGTAATCTCCTTTTCTTATTTGATCTTGCCCTGGCTTTAGTCAGGAACACCTGCTCAGTTAGAAATGTATTCGGTGGGTATGTACGCAGTTGGAGAATGTGCCCCAACACACGCCGCCTTTGGCCTGTATGTTGGAGTCCTAGAGAGGCAGACAATGTTGATGAGCTTGGTACCAGCATGGTGCGCCATTCATCCGGACACAATTTCTGATAAAGAGGGTCACAACTGGGAGAAACCTCAGATTCTACTTGCTTCTCTTCTCCACGTTATTAGACTTTTTTTCCCCTCTTGAATTTTATAAGCACACTCCTTTTAAAACAATTAATTAATAACGAGCACTGGGATTTGATGTAGAATTGCGTATTTGTAACTGCAATGGCACTGGTTTTCAACTACCCTGTAACAAGGAAGCAATTCTAACCAGCAAAAGAGGCAGACGTGTTTCTGTGCAACATCACAGGCGTGTGAAATTGTTCAGATATTGAGATATCAGGAGTGATATAAATTGGAAATTTAACCAAAAATATTTTCCATCAGTGAACAAAGCCGATTTTAAAGTGCCTCTTGCATTTTTCAGATCTTTCTCTTTCTTTTTCCCAAAGTCACATTGTAGTTTCTGATAAAGGAACACACTGGGAAAACTAAGCACATATTTAATCAATGAAATTTAAGGTGTAAAAATTCTGCATTTCTGACAAATTTAATGTTCACTTTTTTCTTGATTTAAATAGAGCATTCTAAAAATATTACCCCTATAGGGGATAAATTTTTATATGCATGTTATTTTTCTTTACAAAGTGTGGGCTAGTAAAGAGTGAAAAAGACCTTGGCTATTGTACTTATTTCTTGAAAGAAATAATAGCATCTTAATGACTGGATTCAAATCTCTGCTTATCACACAACTTCCGTACAGTTCAAAGAGAGGACTTGGATTGAATGAAAACAGAGAGCTGGGGCTTCCTACATTCCCCTGTGTTTGTGTTCATACAGAATATTTATGCAATATTCTGACTTGGCCATAATCTGTAATTCCTGCCTATTATTCTCAGTTGCAACTATAAATTCTAGATTAATGGTTATAATTTTGGTAAGGCATACATGAAAAGTTATATGTTCCTGCTTGAAAGGAGGATCATTAAATATTCATTATTACCACTCAAATTAGTTGTCATGCTCTGTGTAATAGTTACCCGTTATCATTTCACTAGTTTGGATTCAGCAGTAAGTGAACAGCAATATATAGCTCATAGCGCCAGAGGACTTTTTTTGTCGGGGAACAGGGAGAGAAATGATTTTAAAACCCATTTGACATATTTATGTTGACAAATTATTTAAAGGAATTACTGTGTTGTAATAAACATGTTTGTATGTTGGAATAGGATTGTGGCTAAATTTGCTTCTAGCTGTTTAATTACTCTTATTATGATTGTGAAAAACAGTGCTTCTTCAAGTAGTTCCAAGGAAAAAAATAGAAAATGGAAAAGTTGAGCTATTTCAGTCTTTTGCAGGTATCTAACCTTGCCATGAAAAAGCACTTTTCATTTTTGTAAGTAGATATTGAAATCTTGCTTTTTCAGCGAAGCTAGATTGTATAATTTATTAGTTTTCTCCACCTGGTAACACATCCTTAAGAAAAAAATTGCCAAAAGTAAAGCATGAGATGGATTTTAAAATAAATGTTGTGGATGAACAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:ENSG00000233593.2]] |
Revision as of 08:27, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000606660.1 |
Source |
Gencode19 |
Same with |
lnc-ZNF644-1:5 |
Classification |
intergenic |
Length |
2786 nt |
Genomic location |
chr1-:91295104..91317175 |
Exon number |
2 |
Exons |
91295104..91297753,91317040..91317175 |
Genome context |
|
Sequence |
000001 ACTGCAGGCT GGGGCTCCGC TCCCCGGCGG GAGCCCGCGC GTGGTTCCCA GCGAAGTCCC CGCGCGGCTG GGCCCAGCGT 000080
000081 GAGTATTCTC CGCCCGCTGT CCTCCCCCTG GAGGCGGCAG CGCCCGTTTA TTTGAGGCTT CTAATGTGAG GAAAAACACG 000160 000161 GAATGACAAG TGTGGGAAAG AGCAAGCACT AAATTACTGT CAGAAAAATA AACGGAGTAG CACAGTGCTG CTCGGTGATT 000240 000241 TACGGGGGCA ATTAGTCACC ACCCCACGGC GCTGCTGAGG ACAGCACGGC AGCAGACAAG TCAGGCCCAT GAGGAAGAAG 000320 000321 AGGCTTTGCA CTGCTCTCCA GACAACTTTT CAAACAACAA GAGAGGATAT TTGAGCACAT TAGGTTTTGT GTCTTCATTC 000400 000401 TGGGTACCTA CTCTTCATAT TATTCTACCA ACTTAATACA TAAACATATT TTTAGCACAA TATGAACCTG TTCTATGTGT 000480 000481 GTTTAAAAGC CTCCAGCAGC AACTTTTTTC TCTCCCACTG TCCAAAGTTG GGTTTTCCCC ATCCCTTAAA AAACAAAACA 000560 000561 AAAAAACCTT TCTTCACTCC AAATTGTCCC CCTGGTGTGT GGTTTTGGTC TTTCTCATTA CTTCTTGCAT CTTGCTACAT 000640 000641 GTTCTGCATT TGCTCAGAGC CACTGGGTGC TAAGGAATTT GGTCTGCTGC TCCTCTGGGA AAGTTTGGTA AGCTGGTACA 000720 000721 AGGAGGTGAT GAACAAGGCT AAATGAAAAT CATACATAAA CTTCCCAATA TTTGTGAACA TGTTCTTTAA CATACCATAC 000800 000801 ATAGTTTCTA TGTATATGTA ACATAGCAAA ACAAACTTGC TAAGGTATAA TTAATTGGTA TGCATGCCTT CATAAATATT 000880 000881 CACCATCAGA AGAAACCTAG AATGAAAGGT TGTGAAAGAA CCCAGGAATG AGAAAGACTT TATTGACTAA AGGCCATGTC 000960 000961 TATGTAGGGG CAACAATGAA GCTGTGGGTG AGCAAATGAA GCTTCATCAG GAGTTTAGTA TCCTTATGTA GCATTACCTA 001040 001041 AGAATGCTAC CATAGTAAAT TTCTGAAGTA CTTTACCTGT TACAAAGAAC GTTTGTAATC TCCTTTTCTT ATTTGATCTT 001120 001121 GCCCTGGCTT TAGTCAGGAA CACCTGCTCA GTTAGAAATG TATTCGGTGG GTATGTACGC AGTTGGAGAA TGTGCCCCAA 001200 001201 CACACGCCGC CTTTGGCCTG TATGTTGGAG TCCTAGAGAG GCAGACAATG TTGATGAGCT TGGTACCAGC ATGGTGCGCC 001280 001281 ATTCATCCGG ACACAATTTC TGATAAAGAG GGTCACAACT GGGAGAAACC TCAGATTCTA CTTGCTTCTC TTCTCCACGT 001360 001361 TATTAGACTT TTTTTCCCCT CTTGAATTTT ATAAGCACAC TCCTTTTAAA ACAATTAATT AATAACGAGC ACTGGGATTT 001440 001441 GATGTAGAAT TGCGTATTTG TAACTGCAAT GGCACTGGTT TTCAACTACC CTGTAACAAG GAAGCAATTC TAACCAGCAA 001520 001521 AAGAGGCAGA CGTGTTTCTG TGCAACATCA CAGGCGTGTG AAATTGTTCA GATATTGAGA TATCAGGAGT GATATAAATT 001600 001601 GGAAATTTAA CCAAAAATAT TTTCCATCAG TGAACAAAGC CGATTTTAAA GTGCCTCTTG CATTTTTCAG ATCTTTCTCT 001680 001681 TTCTTTTTCC CAAAGTCACA TTGTAGTTTC TGATAAAGGA ACACACTGGG AAAACTAAGC ACATATTTAA TCAATGAAAT 001760 001761 TTAAGGTGTA AAAATTCTGC ATTTCTGACA AATTTAATGT TCACTTTTTT CTTGATTTAA ATAGAGCATT CTAAAAATAT 001840 001841 TACCCCTATA GGGGATAAAT TTTTATATGC ATGTTATTTT TCTTTACAAA GTGTGGGCTA GTAAAGAGTG AAAAAGACCT 001920 001921 TGGCTATTGT ACTTATTTCT TGAAAGAAAT AATAGCATCT TAATGACTGG ATTCAAATCT CTGCTTATCA CACAACTTCC 002000 002001 GTACAGTTCA AAGAGAGGAC TTGGATTGAA TGAAAACAGA GAGCTGGGGC TTCCTACATT CCCCTGTGTT TGTGTTCATA 002080 002081 CAGAATATTT ATGCAATATT CTGACTTGGC CATAATCTGT AATTCCTGCC TATTATTCTC AGTTGCAACT ATAAATTCTA 002160 002161 GATTAATGGT TATAATTTTG GTAAGGCATA CATGAAAAGT TATATGTTCC TGCTTGAAAG GAGGATCATT AAATATTCAT 002240 002241 TATTACCACT CAAATTAGTT GTCATGCTCT GTGTAATAGT TACCCGTTAT CATTTCACTA GTTTGGATTC AGCAGTAAGT 002320 002321 GAACAGCAAT ATATAGCTCA TAGCGCCAGA GGACTTTTTT TGTCGGGGAA CAGGGAGAGA AATGATTTTA AAACCCATTT 002400 002401 GACATATTTA TGTTGACAAA TTATTTAAAG GAATTACTGT GTTGTAATAA ACATGTTTGT ATGTTGGAAT AGGATTGTGG 002480 002481 CTAAATTTGC TTCTAGCTGT TTAATTACTC TTATTATGAT TGTGAAAAAC AGTGCTTCTT CAAGTAGTTC CAAGGAAAAA 002560 002561 AATAGAAAAT GGAAAAGTTG AGCTATTTCA GTCTTTTGCA GGTATCTAAC CTTGCCATGA AAAAGCACTT TTCATTTTTG 002640 002641 TAAGTAGATA TTGAAATCTT GCTTTTTCAG CGAAGCTAGA TTGTATAATT TATTAGTTTT CTCCACCTGG TAACACATCC 002720 002721 TTAAGAAAAA AATTGCCAAA AGTAAAGCAT GAGATGGATT TTAAAATAAA TGTTGTGGAT GAACAC |
Predicted Small Protein
Name | ENST00000606660.1_smProtein_461:745 |
Length | 95 |
Molecular weight | 10835.8357 |
Aromaticity | 0.18085106383 |
Instability index | 44.9735106383 |
Isoelectric point | 9.13275146484 |
Runs | 10 |
Runs residual | 0.0224329324699 |
Runs probability | 0.0296855679209 |
Amino acid sequence | MNLFYVCLKASSSNFFLSHCPKLGFPHPLKNKTKKPFFTPNCPPGVWFWSFSLLLASCYM FCICSEPLGAKEFGLLLLWESLVSWYKEVMNKAK |
Secondary structure | LLEEEEEEEELLLLHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHE EEELLLLLLHHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTT TTTooooooooooooooooooooooooooooooo |