Difference between revisions of "NONHSAT145927"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GGATTGGGATATTCCGACTCCTTAAGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAATAAAGGATGGTCTTGGGTGTCAATTCTTGAA</dnaseq>| | sequence = <dnaseq>GGATTGGGATATTCCGACTCCTTAAGGGCCTGGCGCACATAAGGTGTGACCTTTTCATTCCCGTTGTTATGGAGGGCCACATCTGCCAGAGCCTGGAGTCTGCGAAGGCCGGGACCCGGTTCCCCGGCCCACAGTGGGGGTGTGCAAACCCGAGAGAACTGGGTTGCAAATTCGTGAAGAATCAGCATCATGTTTGGCAGCTGAGTATTGGAGCCAGGAGCCTGCCATGAGGTTATATTCCCAGAGGATGTCAGTCCCAAGGACCAGTAGCTGCCATCAGTTTGGATTCTGAAAACTAACTGGCATCAACACTGGGTGTAGAAACATGCTTGCCTTATGTATCAGAGGACATGCTCAGCAGATCCAAGAGATATATTTGGCAACTTTTTCTAGAAAAGGCACATTGGGTATCATTCATTACATTCTTGAGTTTTTTTGGGTTTTTTTTTTTTTTTTTGAGACAGTCTTGCTGTATTGCCCAGGCTGGAGTGTGGTGGCACAATCACAGCTCATTGCATCCTCAATCACCCAGGCCTAAGCAATCCTCCCACCTTGTAGCTGGGACTACAGCTCACAGCACACCTGGCTAAAATTTTTTTTTTGTTGAGACGGATTCTCTATGTTGCCCAGGCTGGTCTCAGGCTCCTGGGCTCAGATGGTCCTCCTGCCTCAGCTTCCAAAGGCACAGGCCAAGTTGTAGCTTTGTCCCTTGCCATCATGCCCAACAAGAGGTTCTATACCTTTTAATGAATTGACTTTCATAAATTGGTTATGTTGGTGGGCAAAGTTCTTTAAGCTGGAAATTGTAAATTCCTCCTGAAATGTTTTTTCATGCAGTTACCATGAACTAATACTACAATAAAGGATGGTCTTGGGTGTCAATTCTTGAA</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG020957]] |
Revision as of 08:43, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT145927 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
intergenic |
| Length |
890 nt |
| Genomic location |
chr17+:16342301..16345340 |
| Exon number |
4 |
| Exons |
16342301..16342374,16342641..16342728,16343499..16343567,16344682..16345340 |
| Genome context |
|
| Sequence |
000001 GGATTGGGAT ATTCCGACTC CTTAAGGGCC TGGCGCACAT AAGGTGTGAC CTTTTCATTC CCGTTGTTAT GGAGGGCCAC 000080
000081 ATCTGCCAGA GCCTGGAGTC TGCGAAGGCC GGGACCCGGT TCCCCGGCCC ACAGTGGGGG TGTGCAAACC CGAGAGAACT 000160 000161 GGGTTGCAAA TTCGTGAAGA ATCAGCATCA TGTTTGGCAG CTGAGTATTG GAGCCAGGAG CCTGCCATGA GGTTATATTC 000240 000241 CCAGAGGATG TCAGTCCCAA GGACCAGTAG CTGCCATCAG TTTGGATTCT GAAAACTAAC TGGCATCAAC ACTGGGTGTA 000320 000321 GAAACATGCT TGCCTTATGT ATCAGAGGAC ATGCTCAGCA GATCCAAGAG ATATATTTGG CAACTTTTTC TAGAAAAGGC 000400 000401 ACATTGGGTA TCATTCATTA CATTCTTGAG TTTTTTTGGG TTTTTTTTTT TTTTTTTGAG ACAGTCTTGC TGTATTGCCC 000480 000481 AGGCTGGAGT GTGGTGGCAC AATCACAGCT CATTGCATCC TCAATCACCC AGGCCTAAGC AATCCTCCCA CCTTGTAGCT 000560 000561 GGGACTACAG CTCACAGCAC ACCTGGCTAA AATTTTTTTT TTGTTGAGAC GGATTCTCTA TGTTGCCCAG GCTGGTCTCA 000640 000641 GGCTCCTGGG CTCAGATGGT CCTCCTGCCT CAGCTTCCAA AGGCACAGGC CAAGTTGTAG CTTTGTCCCT TGCCATCATG 000720 000721 CCCAACAAGA GGTTCTATAC CTTTTAATGA ATTGACTTTC ATAAATTGGT TATGTTGGTG GGCAAAGTTC TTTAAGCTGG 000800 000801 AAATTGTAAA TTCCTCCTGA AATGTTTTTT CATGCAGTTA CCATGAACTA ATACTACAAT AAAGGATGGT CTTGGGTGTC 000880 000881 AATTCTTGAA |
Predicted Small Protein
| Name | NONHSAT145927_smProtein_350:589 |
| Length | 80 |
| Molecular weight | 9214.4964 |
| Aromaticity | 0.189873417722 |
| Instability index | 66.6151898734 |
| Isoelectric point | 10.4531860352 |
| Runs | 11 |
| Runs residual | 0.00104040228889 |
| Runs probability | 0.0156091920798 |
| Amino acid sequence | MLSRSKRYIWQLFLEKAHWVSFITFLSFFGFFFFFLRQSCCIAQAGVWWHNHSSLHPQSP RPKQSSHLVAGTTAHSTPG |
| Secondary structure | LLLHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEELLLLLLLLLLL LLLLLLEEEELLEELLLLL |
| PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTooooooooooooooooo ooooooooooooooooooo |
