Difference between revisions of "NONHSAT057283"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>AGGCCTGGAGCATCACCTATCACAGCTGGCTGACCTTCGTGCTGCTGATCTGGTCGTGCACTCTTTGGATGATTCGCAACAGAAGAAAATATGCCATGATCAGCTCTCCCTTCATGGTGGTTTATGGAAACCTATTGTTGATATTACAGTATATATGGAGTTTTGAACTTCCTGAAATTAAAAAAGTTCCAGGATTTTTAGAAAAGAAAGAGCCAGGAGAACTTGCTTCCAAAGTAAGTGAATAGAATACAATAAAACAAAACAATGACACAAAACCACAATCATCATCATAATCGTATCCAAGAGAAACCTTATAAAAACAGGTTCCAAATATTCACTGCTTTGTAAAAATGAACAAACATGAGACTGTAAGAAACAGTTTGCGGTGCTTAGAGGCCTCTATAATTTAAACATGAACATATATTACACCATGATTTAGCTTTTACTTAGGAATGACAATGTTTTCCACTCAAAGAAAACTTGTATAAATGTTTTTAAGTATAAATCCTACTAGAGTAAAAATTAGGTGTGAAAATAGGAAAATACAGTGCAAAATGTGTTAAGGGATTATAGGACTGTCTTTGATTATCATTTTATAAAACATGCTTAGTGCATTAGTGTCACAGATAAGTATTGATTATTCATGACGTTTTTCTCCAATTCTTTCCTAAAGAACATTTTTAGCAGCAAAAATGAAGTATGACACTTGCTGTTTTTCTTCTACTGATTATATGATATGTTCTTATCTGAGTTAGAATGTTCATACTCTTCTCATTACTTATTTGCTTTCATGGGCCATTTTAACAGTTTTATTTCAAAAGATTAGGTTTCCCAACTTACTGTTTGTTTTGTTAACAGAATGGCAGACTAAACACACATTCCCTTTGTGTTAATAATTTAGTTTTAAGACAGTAAAAATAAACGTGTTTATATTG</dnaseq>| | sequence = <dnaseq>AGGCCTGGAGCATCACCTATCACAGCTGGCTGACCTTCGTGCTGCTGATCTGGTCGTGCACTCTTTGGATGATTCGCAACAGAAGAAAATATGCCATGATCAGCTCTCCCTTCATGGTGGTTTATGGAAACCTATTGTTGATATTACAGTATATATGGAGTTTTGAACTTCCTGAAATTAAAAAAGTTCCAGGATTTTTAGAAAAGAAAGAGCCAGGAGAACTTGCTTCCAAAGTAAGTGAATAGAATACAATAAAACAAAACAATGACACAAAACCACAATCATCATCATAATCGTATCCAAGAGAAACCTTATAAAAACAGGTTCCAAATATTCACTGCTTTGTAAAAATGAACAAACATGAGACTGTAAGAAACAGTTTGCGGTGCTTAGAGGCCTCTATAATTTAAACATGAACATATATTACACCATGATTTAGCTTTTACTTAGGAATGACAATGTTTTCCACTCAAAGAAAACTTGTATAAATGTTTTTAAGTATAAATCCTACTAGAGTAAAAATTAGGTGTGAAAATAGGAAAATACAGTGCAAAATGTGTTAAGGGATTATAGGACTGTCTTTGATTATCATTTTATAAAACATGCTTAGTGCATTAGTGTCACAGATAAGTATTGATTATTCATGACGTTTTTCTCCAATTCTTTCCTAAAGAACATTTTTAGCAGCAAAAATGAAGTATGACACTTGCTGTTTTTCTTCTACTGATTATATGATATGTTCTTATCTGAGTTAGAATGTTCATACTCTTCTCATTACTTATTTGCTTTCATGGGCCATTTTAACAGTTTTATTTCAAAAGATTAGGTTTCCCAACTTACTGTTTGTTTTGTTAACAGAATGGCAGACTAAACACACATTCCCTTTGTGTTAATAATTTAGTTTTAAGACAGTAAAAATAAACGTGTTTATATTG</dnaseq>| | ||
}} | }} | ||
| − | [[Category:Sense]] | + | [[Category:Sense]][[Category:NONHSAG023360]] |
Revision as of 08:46, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
| Transcript ID |
NONHSAT057283 |
| Source |
NONCODE4.0 |
| Same with |
, |
| Classification |
sense |
| Length |
935 nt |
| Genomic location |
chr18-:10794068..10795002 |
| Exon number |
1 |
| Exons |
10794068..10795002 |
| Genome context |
|
| Sequence |
000001 AGGCCTGGAG CATCACCTAT CACAGCTGGC TGACCTTCGT GCTGCTGATC TGGTCGTGCA CTCTTTGGAT GATTCGCAAC 000080
000081 AGAAGAAAAT ATGCCATGAT CAGCTCTCCC TTCATGGTGG TTTATGGAAA CCTATTGTTG ATATTACAGT ATATATGGAG 000160 000161 TTTTGAACTT CCTGAAATTA AAAAAGTTCC AGGATTTTTA GAAAAGAAAG AGCCAGGAGA ACTTGCTTCC AAAGTAAGTG 000240 000241 AATAGAATAC AATAAAACAA AACAATGACA CAAAACCACA ATCATCATCA TAATCGTATC CAAGAGAAAC CTTATAAAAA 000320 000321 CAGGTTCCAA ATATTCACTG CTTTGTAAAA ATGAACAAAC ATGAGACTGT AAGAAACAGT TTGCGGTGCT TAGAGGCCTC 000400 000401 TATAATTTAA ACATGAACAT ATATTACACC ATGATTTAGC TTTTACTTAG GAATGACAAT GTTTTCCACT CAAAGAAAAC 000480 000481 TTGTATAAAT GTTTTTAAGT ATAAATCCTA CTAGAGTAAA AATTAGGTGT GAAAATAGGA AAATACAGTG CAAAATGTGT 000560 000561 TAAGGGATTA TAGGACTGTC TTTGATTATC ATTTTATAAA ACATGCTTAG TGCATTAGTG TCACAGATAA GTATTGATTA 000640 000641 TTCATGACGT TTTTCTCCAA TTCTTTCCTA AAGAACATTT TTAGCAGCAA AAATGAAGTA TGACACTTGC TGTTTTTCTT 000720 000721 CTACTGATTA TATGATATGT TCTTATCTGA GTTAGAATGT TCATACTCTT CTCATTACTT ATTTGCTTTC ATGGGCCATT 000800 000801 TTAACAGTTT TATTTCAAAA GATTAGGTTT CCCAACTTAC TGTTTGTTTT GTTAACAGAA TGGCAGACTA AACACACATT 000880 000881 CCCTTTGTGT TAATAATTTA GTTTTAAGAC AGTAAAAATA AACGTGTTTA TATTG |
Predicted Small Protein
| Name | NONHSAT057283_smProtein_68:244 |
| Length | 59 |
| Molecular weight | 6789.0357 |
| Aromaticity | 0.120689655172 |
| Instability index | 57.4534482759 |
| Isoelectric point | 9.45452880859 |
| Runs | 8 |
| Runs residual | 0.0186623721106 |
| Runs probability | 0.0418653948067 |
| Amino acid sequence | MIRNRRKYAMISSPFMVVYGNLLLILQYIWSFELPEIKKVPGFLEKKEPGELASKVSE |
| Secondary structure | LLLLLLEEEEELLLLEEHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLHHHLLLLL |
| PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL |
| PiMo | iiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooo |
