Difference between revisions of "NONHSAT006701"
(Created page with "Please input one-sentence summary here.
==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
|||
Line 42: | Line 42: | ||
sequence = <dnaseq>GCGGGGCAGCCCCCGCCCTCCTGGCTCTCCATCCCGGCGGATCTTTGATAGACTGGAGTGTCGCCGCTGCCACCacgggaaaatgggtcatggaggagtgacttcaccaacatcactcaTAGGTGCTTGTGTCCGTGGTGAGAAGGGTGATGGAGAGAAGTGGCTGCAGTTCCCACCCATGGAGAGGTCACTGGTGAATCCCAGCTAAAGAGGAAGGACAGGCCCGGCCTGAGTCCCACAGGCTTACCATCTGAGTCCTTCTGATTGGGATTGGGTACCAGGCGGCAGTTATCGGGACCAGGAGGCACATAATCTGGGATGCCATCATTGTCATCATCCCCATCACACTCATCTCCAAGTCCATCGTTATCAGAGTCCAGCTGGGAGCTATTTGGCAGCTGTGGGCAGTTGTCCTTGGTGTCCTGATGCCCATCCCCATCGCTAATCAGAAGAACAGGTTGGTGAAAGTCCCGAACTTTGTCTCCCCACCCAGAGGACAACTGGCCAGGAAATCTGCCTGTTTCTTGTCTCACCCTCTAGTCCACACTCTGCCTAACACTACGCCCTACCTCACATTCCTATTGACATCTGCTGCAGGTAATCTCTCCTCACCCAGGCCAACGTCCACAAGCCTGCCTCCCTATTTCACAGAGACTTCCTAGCTTCCCTGCTTCATCCCCACCTGATCCAAATTCTCACAGGTCCCCCAGCCACCCCTTCAGCCCCAGGCCTGCACCATCCCCATCCACGTCGTTGTCACAGGCATCTCCTTCCCCATTGCCATCTGTGTCCTTCTGGTCATTGTTGGGAACGTTGGGGCAATTGTCACAGGCATCACCAAATGAATCTGTATCTGAGTTCTGCTGGTCTTTGTTGGGGAACAGCCGGCAGTTGTCCTGGGCAGAGGGGTGGGAGGGGAAGGGTCAGGTCTCCCCTAAATCACTTGTCATCTTGCACCTACCTTGTCTCTGTATCCTTTTCTAAGATCACACCCTTGTGATGGACAAACTGCTCAGTACAGTCCCACCCACCCAGCCTCCTTGTCCTGGGCACGAGGTTTTTGCCTCCCTGATTTGGAGTATTTGGCCCTTACTAGAGAGCTGCCAGATGAGGGACATTTCCTTCACCTGGAGAAGGATGGGGAGGAGTCAGCACTTGACATCTGCCACCCTACCCCAGAATCAGTGCCACCCTTCGCCAGCC</dnaseq>| | sequence = <dnaseq>GCGGGGCAGCCCCCGCCCTCCTGGCTCTCCATCCCGGCGGATCTTTGATAGACTGGAGTGTCGCCGCTGCCACCacgggaaaatgggtcatggaggagtgacttcaccaacatcactcaTAGGTGCTTGTGTCCGTGGTGAGAAGGGTGATGGAGAGAAGTGGCTGCAGTTCCCACCCATGGAGAGGTCACTGGTGAATCCCAGCTAAAGAGGAAGGACAGGCCCGGCCTGAGTCCCACAGGCTTACCATCTGAGTCCTTCTGATTGGGATTGGGTACCAGGCGGCAGTTATCGGGACCAGGAGGCACATAATCTGGGATGCCATCATTGTCATCATCCCCATCACACTCATCTCCAAGTCCATCGTTATCAGAGTCCAGCTGGGAGCTATTTGGCAGCTGTGGGCAGTTGTCCTTGGTGTCCTGATGCCCATCCCCATCGCTAATCAGAAGAACAGGTTGGTGAAAGTCCCGAACTTTGTCTCCCCACCCAGAGGACAACTGGCCAGGAAATCTGCCTGTTTCTTGTCTCACCCTCTAGTCCACACTCTGCCTAACACTACGCCCTACCTCACATTCCTATTGACATCTGCTGCAGGTAATCTCTCCTCACCCAGGCCAACGTCCACAAGCCTGCCTCCCTATTTCACAGAGACTTCCTAGCTTCCCTGCTTCATCCCCACCTGATCCAAATTCTCACAGGTCCCCCAGCCACCCCTTCAGCCCCAGGCCTGCACCATCCCCATCCACGTCGTTGTCACAGGCATCTCCTTCCCCATTGCCATCTGTGTCCTTCTGGTCATTGTTGGGAACGTTGGGGCAATTGTCACAGGCATCACCAAATGAATCTGTATCTGAGTTCTGCTGGTCTTTGTTGGGGAACAGCCGGCAGTTGTCCTGGGCAGAGGGGTGGGAGGGGAAGGGTCAGGTCTCCCCTAAATCACTTGTCATCTTGCACCTACCTTGTCTCTGTATCCTTTTCTAAGATCACACCCTTGTGATGGACAAACTGCTCAGTACAGTCCCACCCACCCAGCCTCCTTGTCCTGGGCACGAGGTTTTTGCCTCCCTGATTTGGAGTATTTGGCCCTTACTAGAGAGCTGCCAGATGAGGGACATTTCCTTCACCTGGAGAAGGATGGGGAGGAGTCAGCACTTGACATCTGCCACCCTACCCCAGAATCAGTGCCACCCTTCGCCAGCC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Antisense]] | + | [[Category:Antisense]][[Category:NONHSAG003053]] |
Revision as of 09:06, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT006701 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1203 nt |
Genomic location |
chr1+:155165086..155173004 |
Exon number |
5 |
Exons |
155165086..155165159,155166642..155166808,155168194..155168409,155169963..155170617,155172914..155173004 |
Genome context |
|
Sequence |
000001 GCGGGGCAGC CCCCGCCCTC CTGGCTCTCC ATCCCGGCGG ATCTTTGATA GACTGGAGTG TCGCCGCTGC CACCacggga 000080
000081 aaatgggtca tggaggagtg acttcaccaa catcactcaT AGGTGCTTGT GTCCGTGGTG AGAAGGGTGA TGGAGAGAAG 000160 000161 TGGCTGCAGT TCCCACCCAT GGAGAGGTCA CTGGTGAATC CCAGCTAAAG AGGAAGGACA GGCCCGGCCT GAGTCCCACA 000240 000241 GGCTTACCAT CTGAGTCCTT CTGATTGGGA TTGGGTACCA GGCGGCAGTT ATCGGGACCA GGAGGCACAT AATCTGGGAT 000320 000321 GCCATCATTG TCATCATCCC CATCACACTC ATCTCCAAGT CCATCGTTAT CAGAGTCCAG CTGGGAGCTA TTTGGCAGCT 000400 000401 GTGGGCAGTT GTCCTTGGTG TCCTGATGCC CATCCCCATC GCTAATCAGA AGAACAGGTT GGTGAAAGTC CCGAACTTTG 000480 000481 TCTCCCCACC CAGAGGACAA CTGGCCAGGA AATCTGCCTG TTTCTTGTCT CACCCTCTAG TCCACACTCT GCCTAACACT 000560 000561 ACGCCCTACC TCACATTCCT ATTGACATCT GCTGCAGGTA ATCTCTCCTC ACCCAGGCCA ACGTCCACAA GCCTGCCTCC 000640 000641 CTATTTCACA GAGACTTCCT AGCTTCCCTG CTTCATCCCC ACCTGATCCA AATTCTCACA GGTCCCCCAG CCACCCCTTC 000720 000721 AGCCCCAGGC CTGCACCATC CCCATCCACG TCGTTGTCAC AGGCATCTCC TTCCCCATTG CCATCTGTGT CCTTCTGGTC 000800 000801 ATTGTTGGGA ACGTTGGGGC AATTGTCACA GGCATCACCA AATGAATCTG TATCTGAGTT CTGCTGGTCT TTGTTGGGGA 000880 000881 ACAGCCGGCA GTTGTCCTGG GCAGAGGGGT GGGAGGGGAA GGGTCAGGTC TCCCCTAAAT CACTTGTCAT CTTGCACCTA 000960 000961 CCTTGTCTCT GTATCCTTTT CTAAGATCAC ACCCTTGTGA TGGACAAACT GCTCAGTACA GTCCCACCCA CCCAGCCTCC 001040 001041 TTGTCCTGGG CACGAGGTTT TTGCCTCCCT GATTTGGAGT ATTTGGCCCT TACTAGAGAG CTGCCAGATG AGGGACATTT 001120 001121 CCTTCACCTG GAGAAGGATG GGGAGGAGTC AGCACTTGAC ATCTGCCACC CTACCCCAGA ATCAGTGCCA CCCTTCGCCA 001200 001201 GCC |
Predicted Small Protein
Name | NONHSAT006701_smProtein_425:661 |
Length | 79 |
Molecular weight | 8489.74 |
Aromaticity | 0.0769230769231 |
Instability index | 42.4858974359 |
Isoelectric point | 10.545715332 |
Runs | 11 |
Runs residual | 0.0073483427142 |
Runs probability | 0.0449567214273 |
Amino acid sequence | MPIPIANQKNRLVKVPNFVSPPRGQLARKSACFLSHPLVHTLPNTTPYLTFLLTSAAGNL SSPRPTSTSLPPYFTETS |
Secondary structure | LLLLLLLLLLLEEELLLLLLLLHHHHHHHLLLEELLLLEELLLLLLHHHHHHHHHHLLLL LLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |