Difference between revisions of "NONHSAT006701"

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sequence = <dnaseq>GCGGGGCAGCCCCCGCCCTCCTGGCTCTCCATCCCGGCGGATCTTTGATAGACTGGAGTGTCGCCGCTGCCACCacgggaaaatgggtcatggaggagtgacttcaccaacatcactcaTAGGTGCTTGTGTCCGTGGTGAGAAGGGTGATGGAGAGAAGTGGCTGCAGTTCCCACCCATGGAGAGGTCACTGGTGAATCCCAGCTAAAGAGGAAGGACAGGCCCGGCCTGAGTCCCACAGGCTTACCATCTGAGTCCTTCTGATTGGGATTGGGTACCAGGCGGCAGTTATCGGGACCAGGAGGCACATAATCTGGGATGCCATCATTGTCATCATCCCCATCACACTCATCTCCAAGTCCATCGTTATCAGAGTCCAGCTGGGAGCTATTTGGCAGCTGTGGGCAGTTGTCCTTGGTGTCCTGATGCCCATCCCCATCGCTAATCAGAAGAACAGGTTGGTGAAAGTCCCGAACTTTGTCTCCCCACCCAGAGGACAACTGGCCAGGAAATCTGCCTGTTTCTTGTCTCACCCTCTAGTCCACACTCTGCCTAACACTACGCCCTACCTCACATTCCTATTGACATCTGCTGCAGGTAATCTCTCCTCACCCAGGCCAACGTCCACAAGCCTGCCTCCCTATTTCACAGAGACTTCCTAGCTTCCCTGCTTCATCCCCACCTGATCCAAATTCTCACAGGTCCCCCAGCCACCCCTTCAGCCCCAGGCCTGCACCATCCCCATCCACGTCGTTGTCACAGGCATCTCCTTCCCCATTGCCATCTGTGTCCTTCTGGTCATTGTTGGGAACGTTGGGGCAATTGTCACAGGCATCACCAAATGAATCTGTATCTGAGTTCTGCTGGTCTTTGTTGGGGAACAGCCGGCAGTTGTCCTGGGCAGAGGGGTGGGAGGGGAAGGGTCAGGTCTCCCCTAAATCACTTGTCATCTTGCACCTACCTTGTCTCTGTATCCTTTTCTAAGATCACACCCTTGTGATGGACAAACTGCTCAGTACAGTCCCACCCACCCAGCCTCCTTGTCCTGGGCACGAGGTTTTTGCCTCCCTGATTTGGAGTATTTGGCCCTTACTAGAGAGCTGCCAGATGAGGGACATTTCCTTCACCTGGAGAAGGATGGGGAGGAGTCAGCACTTGACATCTGCCACCCTACCCCAGAATCAGTGCCACCCTTCGCCAGCC</dnaseq>|
 
sequence = <dnaseq>GCGGGGCAGCCCCCGCCCTCCTGGCTCTCCATCCCGGCGGATCTTTGATAGACTGGAGTGTCGCCGCTGCCACCacgggaaaatgggtcatggaggagtgacttcaccaacatcactcaTAGGTGCTTGTGTCCGTGGTGAGAAGGGTGATGGAGAGAAGTGGCTGCAGTTCCCACCCATGGAGAGGTCACTGGTGAATCCCAGCTAAAGAGGAAGGACAGGCCCGGCCTGAGTCCCACAGGCTTACCATCTGAGTCCTTCTGATTGGGATTGGGTACCAGGCGGCAGTTATCGGGACCAGGAGGCACATAATCTGGGATGCCATCATTGTCATCATCCCCATCACACTCATCTCCAAGTCCATCGTTATCAGAGTCCAGCTGGGAGCTATTTGGCAGCTGTGGGCAGTTGTCCTTGGTGTCCTGATGCCCATCCCCATCGCTAATCAGAAGAACAGGTTGGTGAAAGTCCCGAACTTTGTCTCCCCACCCAGAGGACAACTGGCCAGGAAATCTGCCTGTTTCTTGTCTCACCCTCTAGTCCACACTCTGCCTAACACTACGCCCTACCTCACATTCCTATTGACATCTGCTGCAGGTAATCTCTCCTCACCCAGGCCAACGTCCACAAGCCTGCCTCCCTATTTCACAGAGACTTCCTAGCTTCCCTGCTTCATCCCCACCTGATCCAAATTCTCACAGGTCCCCCAGCCACCCCTTCAGCCCCAGGCCTGCACCATCCCCATCCACGTCGTTGTCACAGGCATCTCCTTCCCCATTGCCATCTGTGTCCTTCTGGTCATTGTTGGGAACGTTGGGGCAATTGTCACAGGCATCACCAAATGAATCTGTATCTGAGTTCTGCTGGTCTTTGTTGGGGAACAGCCGGCAGTTGTCCTGGGCAGAGGGGTGGGAGGGGAAGGGTCAGGTCTCCCCTAAATCACTTGTCATCTTGCACCTACCTTGTCTCTGTATCCTTTTCTAAGATCACACCCTTGTGATGGACAAACTGCTCAGTACAGTCCCACCCACCCAGCCTCCTTGTCCTGGGCACGAGGTTTTTGCCTCCCTGATTTGGAGTATTTGGCCCTTACTAGAGAGCTGCCAGATGAGGGACATTTCCTTCACCTGGAGAAGGATGGGGAGGAGTCAGCACTTGACATCTGCCACCCTACCCCAGAATCAGTGCCACCCTTCGCCAGCC</dnaseq>|
 
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[[Category:Antisense]]
+
[[Category:Antisense]][[Category:NONHSAG003053]]

Revision as of 09:06, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT006701

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1203 nt

Genomic location

chr1+:155165086..155173004

Exon number

5

Exons

155165086..155165159,155166642..155166808,155168194..155168409,155169963..155170617,155172914..155173004

Genome context

Sequence
000001 GCGGGGCAGC CCCCGCCCTC CTGGCTCTCC ATCCCGGCGG ATCTTTGATA GACTGGAGTG TCGCCGCTGC CACCacggga 000080
000081 aaatgggtca tggaggagtg acttcaccaa catcactcaT AGGTGCTTGT GTCCGTGGTG AGAAGGGTGA TGGAGAGAAG 000160
000161 TGGCTGCAGT TCCCACCCAT GGAGAGGTCA CTGGTGAATC CCAGCTAAAG AGGAAGGACA GGCCCGGCCT GAGTCCCACA 000240
000241 GGCTTACCAT CTGAGTCCTT CTGATTGGGA TTGGGTACCA GGCGGCAGTT ATCGGGACCA GGAGGCACAT AATCTGGGAT 000320
000321 GCCATCATTG TCATCATCCC CATCACACTC ATCTCCAAGT CCATCGTTAT CAGAGTCCAG CTGGGAGCTA TTTGGCAGCT 000400
000401 GTGGGCAGTT GTCCTTGGTG TCCTGATGCC CATCCCCATC GCTAATCAGA AGAACAGGTT GGTGAAAGTC CCGAACTTTG 000480
000481 TCTCCCCACC CAGAGGACAA CTGGCCAGGA AATCTGCCTG TTTCTTGTCT CACCCTCTAG TCCACACTCT GCCTAACACT 000560
000561 ACGCCCTACC TCACATTCCT ATTGACATCT GCTGCAGGTA ATCTCTCCTC ACCCAGGCCA ACGTCCACAA GCCTGCCTCC 000640
000641 CTATTTCACA GAGACTTCCT AGCTTCCCTG CTTCATCCCC ACCTGATCCA AATTCTCACA GGTCCCCCAG CCACCCCTTC 000720
000721 AGCCCCAGGC CTGCACCATC CCCATCCACG TCGTTGTCAC AGGCATCTCC TTCCCCATTG CCATCTGTGT CCTTCTGGTC 000800
000801 ATTGTTGGGA ACGTTGGGGC AATTGTCACA GGCATCACCA AATGAATCTG TATCTGAGTT CTGCTGGTCT TTGTTGGGGA 000880
000881 ACAGCCGGCA GTTGTCCTGG GCAGAGGGGT GGGAGGGGAA GGGTCAGGTC TCCCCTAAAT CACTTGTCAT CTTGCACCTA 000960
000961 CCTTGTCTCT GTATCCTTTT CTAAGATCAC ACCCTTGTGA TGGACAAACT GCTCAGTACA GTCCCACCCA CCCAGCCTCC 001040
001041 TTGTCCTGGG CACGAGGTTT TTGCCTCCCT GATTTGGAGT ATTTGGCCCT TACTAGAGAG CTGCCAGATG AGGGACATTT 001120
001121 CCTTCACCTG GAGAAGGATG GGGAGGAGTC AGCACTTGAC ATCTGCCACC CTACCCCAGA ATCAGTGCCA CCCTTCGCCA 001200
001201 GCC
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Predicted Small Protein

Name NONHSAT006701_smProtein_425:661
Length 79
Molecular weight 8489.74
Aromaticity 0.0769230769231
Instability index 42.4858974359
Isoelectric point 10.545715332
Runs 11
Runs residual 0.0073483427142
Runs probability 0.0449567214273
Amino acid sequence MPIPIANQKNRLVKVPNFVSPPRGQLARKSACFLSHPLVHTLPNTTPYLTFLLTSAAGNL
SSPRPTSTSLPPYFTETS
Secondary structure LLLLLLLLLLLEEELLLLLLLLHHHHHHHLLLEELLLLEELLLLLLHHHHHHHHHHLLLL
LLLLLLLLLLLLLLLLLL
PRMN -
PiMo -