Difference between revisions of "NONHSAT082301"
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==Annotated Information==
===Transcriptomic Nomeclature===
Please input transcriptomic nomeclature information here.
===Functio...") |
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sequence = <dnaseq>GTGAAGGGGACAGGGCACAGAGCCGTGCGAAGCCCCACACTGGCATTCACCTCAGGCTGATGACAGTGGCAGTGCGCAGGGGCGCTGCAGGAGGCCGGGGAAGGCGAGGTCACAACAGGCACAATAGGGAGTCGTTGCCAGGCAACCTCTCTAGGCTTCtgttgtgattctgctttagttgggtctgggggggtctctctggagagtggctataaatgctagccttTGTGCTGGGCAGCAAAGCAAATCATCGGGAATAACCCGGGAGCCTGGCAGGGAAACCGCTGCACTATGGAGAGGACGCTTCCAGATACAGAGGACAAATCAAGTGAAGGGACGGAACAGGTCACACCCAGAGCGGCACAGAGATAAAATGTGGTGTGAGGACACGGCCCAGCCCCACCGTCGTCTTCCAGCCCCACCATCGTCTTCCAGCCCCACCGTCGTCTTCCAGTCCCACCGTCGTCTTCTAGCCCCACCATCGTCGTCTTGGACTCTCTGGGTGGCACCACGCTGTGGGTGCTGCTCTCCTCTGTGTCCCAAACGAGTTTGTGCCTCACTTTGTCGGGTTTTGGCTGTGACTTGGAGCCTCACCAAGCTCCCTTTTCCTCTGTCTCCCATTCTCCTCTCCAGGCCAGGGTGGCTTCCCCAGCCCTCCTCCCCGGGTCCTGCCTGTGCCGAGCCTTCCTCCCAGGAGGGAGGTGATACTGACTTGAGATCTTATGGGTGTTTTGTTTGTGGCTGGGCCTGGCCGACCCTCTCTCCACGGCCTTAGATCACACTCTGGATGGATAGGACAGTCGTCCTCAATACTGAGCCTCTTTGGAGCATACCCACTGATGGTGGTTCACAAGCTACCCACGCCCACAGGCTGACCCAGATCTCCGTGAAATTAAAAAATACTGTGAAAGGAAAAAGAGCCAATGTCATGTGGATAATGAAGTGTCAGCCACTGAAAAATCTCAAAATAATAAACATGGCTtgtttgtcagggttctctagagaaacagcagcaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcagagagaaagaaggagggaggaagacataaggaatcagctcatgcaattgtgcagcctggcatgtccacagtctgtaggatgggccggcacgctggagacccaggaaagagctgcagtttgaataggaaggccatgggcgggagagttccttcctgttcaggggacctcagtctttctctagaagacctttggctgaccggatgaggctcatccacgctatggacacaaatcagctttactcaaagtctactgatttaaacgttaatctcatctacaaaaagtaccttcacaaaaacatctagaacaacgtttgaccaaatatctgggtactgtggcttagccaggttg</dnaseq>| | sequence = <dnaseq>GTGAAGGGGACAGGGCACAGAGCCGTGCGAAGCCCCACACTGGCATTCACCTCAGGCTGATGACAGTGGCAGTGCGCAGGGGCGCTGCAGGAGGCCGGGGAAGGCGAGGTCACAACAGGCACAATAGGGAGTCGTTGCCAGGCAACCTCTCTAGGCTTCtgttgtgattctgctttagttgggtctgggggggtctctctggagagtggctataaatgctagccttTGTGCTGGGCAGCAAAGCAAATCATCGGGAATAACCCGGGAGCCTGGCAGGGAAACCGCTGCACTATGGAGAGGACGCTTCCAGATACAGAGGACAAATCAAGTGAAGGGACGGAACAGGTCACACCCAGAGCGGCACAGAGATAAAATGTGGTGTGAGGACACGGCCCAGCCCCACCGTCGTCTTCCAGCCCCACCATCGTCTTCCAGCCCCACCGTCGTCTTCCAGTCCCACCGTCGTCTTCTAGCCCCACCATCGTCGTCTTGGACTCTCTGGGTGGCACCACGCTGTGGGTGCTGCTCTCCTCTGTGTCCCAAACGAGTTTGTGCCTCACTTTGTCGGGTTTTGGCTGTGACTTGGAGCCTCACCAAGCTCCCTTTTCCTCTGTCTCCCATTCTCCTCTCCAGGCCAGGGTGGCTTCCCCAGCCCTCCTCCCCGGGTCCTGCCTGTGCCGAGCCTTCCTCCCAGGAGGGAGGTGATACTGACTTGAGATCTTATGGGTGTTTTGTTTGTGGCTGGGCCTGGCCGACCCTCTCTCCACGGCCTTAGATCACACTCTGGATGGATAGGACAGTCGTCCTCAATACTGAGCCTCTTTGGAGCATACCCACTGATGGTGGTTCACAAGCTACCCACGCCCACAGGCTGACCCAGATCTCCGTGAAATTAAAAAATACTGTGAAAGGAAAAAGAGCCAATGTCATGTGGATAATGAAGTGTCAGCCACTGAAAAATCTCAAAATAATAAACATGGCTtgtttgtcagggttctctagagaaacagcagcaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgcagagagaaagaaggagggaggaagacataaggaatcagctcatgcaattgtgcagcctggcatgtccacagtctgtaggatgggccggcacgctggagacccaggaaagagctgcagtttgaataggaaggccatgggcgggagagttccttcctgttcaggggacctcagtctttctctagaagacctttggctgaccggatgaggctcatccacgctatggacacaaatcagctttactcaaagtctactgatttaaacgttaatctcatctacaaaaagtaccttcacaaaaacatctagaacaacgtttgaccaaatatctgggtactgtggcttagccaggttg</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]] | + | [[Category:Intergenic]][[Category:NONHSAG032926]] |
Revision as of 09:13, 13 October 2014
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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You can also add sub-section(s) at will.
Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT082301 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1413 nt |
Genomic location |
chr21+:43441953..43445471 |
Exon number |
2 |
Exons |
43441953..43442320,43444427..43445471 |
Genome context |
|
Sequence |
000001 GTGAAGGGGA CAGGGCACAG AGCCGTGCGA AGCCCCACAC TGGCATTCAC CTCAGGCTGA TGACAGTGGC AGTGCGCAGG 000080
000081 GGCGCTGCAG GAGGCCGGGG AAGGCGAGGT CACAACAGGC ACAATAGGGA GTCGTTGCCA GGCAACCTCT CTAGGCTTCt 000160 000161 gttgtgattc tgctttagtt gggtctgggg gggtctctct ggagagtggc tataaatgct agccttTGTG CTGGGCAGCA 000240 000241 AAGCAAATCA TCGGGAATAA CCCGGGAGCC TGGCAGGGAA ACCGCTGCAC TATGGAGAGG ACGCTTCCAG ATACAGAGGA 000320 000321 CAAATCAAGT GAAGGGACGG AACAGGTCAC ACCCAGAGCG GCACAGAGAT AAAATGTGGT GTGAGGACAC GGCCCAGCCC 000400 000401 CACCGTCGTC TTCCAGCCCC ACCATCGTCT TCCAGCCCCA CCGTCGTCTT CCAGTCCCAC CGTCGTCTTC TAGCCCCACC 000480 000481 ATCGTCGTCT TGGACTCTCT GGGTGGCACC ACGCTGTGGG TGCTGCTCTC CTCTGTGTCC CAAACGAGTT TGTGCCTCAC 000560 000561 TTTGTCGGGT TTTGGCTGTG ACTTGGAGCC TCACCAAGCT CCCTTTTCCT CTGTCTCCCA TTCTCCTCTC CAGGCCAGGG 000640 000641 TGGCTTCCCC AGCCCTCCTC CCCGGGTCCT GCCTGTGCCG AGCCTTCCTC CCAGGAGGGA GGTGATACTG ACTTGAGATC 000720 000721 TTATGGGTGT TTTGTTTGTG GCTGGGCCTG GCCGACCCTC TCTCCACGGC CTTAGATCAC ACTCTGGATG GATAGGACAG 000800 000801 TCGTCCTCAA TACTGAGCCT CTTTGGAGCA TACCCACTGA TGGTGGTTCA CAAGCTACCC ACGCCCACAG GCTGACCCAG 000880 000881 ATCTCCGTGA AATTAAAAAA TACTGTGAAA GGAAAAAGAG CCAATGTCAT GTGGATAATG AAGTGTCAGC CACTGAAAAA 000960 000961 TCTCAAAATA ATAAACATGG CTtgtttgtc agggttctct agagaaacag cagcaactgt gtgtgtgtgt gtgtgtgtgt 001040 001041 gtgtgtgtgt gtgtgtgtgc gcgcagagag aaagaaggag ggaggaagac ataaggaatc agctcatgca attgtgcagc 001120 001121 ctggcatgtc cacagtctgt aggatgggcc ggcacgctgg agacccagga aagagctgca gtttgaatag gaaggccatg 001200 001201 ggcgggagag ttccttcctg ttcaggggac ctcagtcttt ctctagaaga cctttggctg accggatgag gctcatccac 001280 001281 gctatggaca caaatcagct ttactcaaag tctactgatt taaacgttaa tctcatctac aaaaagtacc ttcacaaaaa 001360 001361 catctagaac aacgtttgac caaatatctg ggtactgtgg cttagccagg ttg |
Predicted Small Protein
Name | NONHSAT082301_smProtein_722:874 |
Length | 51 |
Molecular weight | 5215.0623 |
Aromaticity | 0.08 |
Instability index | 56.844 |
Isoelectric point | 11.0001831055 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0452413197511 |
Amino acid sequence | MGVLFVAGPGRPSLHGLRSHSGWIGQSSSILSLFGAYPLMVVHKLPTPTG |
Secondary structure | LEEEEEELLLLLLLLLLLLLLLEEEELHHHHHHLLLLEEEEEELLLLLLL |
PRMN | - |
PiMo | - |