Difference between revisions of "ENST00000453100.1"
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sequence = <dnaseq>ACTGTGCCCTGGATGTGAGACGTGGAATCAAGGAGATTATTTTGGAGCTTTAAGACGTAATGGCACCCTGCTGGGTTTCAGACTTGAGTGGAGCCTGCAGCCTTTCTTTCGGCCGGTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGCTCCTAATTTTCTCATGTCAGACATAAGAAAAAAAAATATTTTTTAAAGAAAAAGCTTTAGGTTGCAAAAATCTAGGCCTTTCAACTTTAAAATCCTATTCTTGCAAGCCTTGGAGAATAAAGCTTATGCATAAACAGTAGATTTGGAAAC</dnaseq>| | sequence = <dnaseq>ACTGTGCCCTGGATGTGAGACGTGGAATCAAGGAGATTATTTTGGAGCTTTAAGACGTAATGGCACCCTGCTGGGTTTCAGACTTGAGTGGAGCCTGCAGCCTTTCTTTCGGCCGGTTTCTCCCTTTTGGAACGGGAGTATTTACCCAATGCCTGTACCCCCATGGTGGCAGCTGAGGCTTACTACCCCAGGAAAGGGATGCCACCAGAGAAGGCAGACAACCAAGATGGCGACTCTCAATTTTTGAGCTCCTAATTTTCTCATGTCAGACATAAGAAAAAAAAATATTTTTTAAAGAAAAAGCTTTAGGTTGCAAAAATCTAGGCCTTTCAACTTTAAAATCCTATTCTTGCAAGCCTTGGAGAATAAAGCTTATGCATAAACAGTAGATTTGGAAAC</dnaseq>| | ||
}} | }} | ||
− | [[Category:Intergenic]][[Category:lnc-GREB1-4]] | + | [[Category:Intergenic]][[Category:lnc-GREB1-4]][[Category:NONHSAG027008]] |
Revision as of 09:25, 13 October 2014
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Contents
Annotated Information
Name
LINC00570
Characteristics
Multiple 2-4 exon isoforms with variation in splicing and TSSs. Isoforms between 380 nt and 1.3kb. Intergenic between ROCK2 and E2F6. In-vitro translation showed no sign of protein product.
Function
LINC00570 expression appears to stimulate ROCK2 gene expression (in HeLa cells).
Expression
Expressed in HeLa cells.
Conservation
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Misc
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Transcriptomic Nomeclature
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Regulation
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
ENST00000453100.1 |
Source |
Gencode19 |
Same with |
lnc-GREB1-4:3,NONHSAT069166 |
Classification |
intergenic |
Length |
399 nt |
Genomic location |
chr2+:11539180..11542384 |
Exon number |
2 |
Exons |
11539180..11539344,11542151..11542384 |
Genome context |
|
Sequence |
000001 ACTGTGCCCT GGATGTGAGA CGTGGAATCA AGGAGATTAT TTTGGAGCTT TAAGACGTAA TGGCACCCTG CTGGGTTTCA 000080
000081 GACTTGAGTG GAGCCTGCAG CCTTTCTTTC GGCCGGTTTC TCCCTTTTGG AACGGGAGTA TTTACCCAAT GCCTGTACCC 000160 000161 CCATGGTGGC AGCTGAGGCT TACTACCCCA GGAAAGGGAT GCCACCAGAG AAGGCAGACA ACCAAGATGG CGACTCTCAA 000240 000241 TTTTTGAGCT CCTAATTTTC TCATGTCAGA CATAAGAAAA AAAAATATTT TTTAAAGAAA AAGCTTTAGG TTGCAAAAAT 000320 000321 CTAGGCCTTT CAACTTTAAA ATCCTATTCT TGCAAGCCTT GGAGAATAAA GCTTATGCAT AAACAGTAGA TTTGGAAAC |