Difference between revisions of "ENST00000541861.1"

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sequence = <dnaseq>GTTGTCGCTGTTGCAGCCGAGTTCAGCCGGGAGCAGAGCGAACCGCACCGGCCCGAGCGGAGCGCCGCACGTTCCCAACCGCGAGGCCAGACATCTGACTGTTGGTGTGAGACCAGTGCTCCTGGTGGTGTGCCCTGAGCCATGGAGGCGCCTTTGCAGACAGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTCAGAGGGGCTGCTCCCGGTCATCACCCCCATGGCAGGCAACCAGAGGGTCGAGGACCCTGCACGGAGCTGTATGGAGGGCAAGAGCTTCCTACAGAAAAGTCCCAGCAAGGAGCCACACTTCACTGACTTCGAGGGGAAGACATCATTCGGGATGTCAGTGTTCAACCTCAGCAATGCCATCATGGGCAGCGGCATCCTGGGACTCGCCTATGCCATGGCCAATACGGGCATTATCCTTTTCCTGTTCCTGTTGACAGCTGTCGCCTTGCTCTCCAGCTACTCCATCCACCTGCTACTCAAGTCCTCAGGGGTCGTGGGCATCCGTGCCTATGAGCAGCTGGGCTACCGTGCCTTTGGGACCCCAGGAAAGCTGGCAGCAGCCCTGGCCATCACGCTCCAGAACATCGGAGCCATGTCCAGCTACCTGTACATCATCAAGTCTGAGCTGCCACTTGTCATACAGACCTTCCTGAACCTGGAGGAGAAAACCTCGGACTGGTACATGAACGGGAACTACCTGGTAATCCTTGTCTCTGTCACCATCATTCTGCCCCTGGCACTGATGCGGCAGCTTGGCTACCTGGGCTACTCCAGCGGCTTCTCTCTTAGCTGCATGGTGTTCTTCCTAATTGCAGTCATCTACAAAAAGTTCCACGTGCCCTGCCCACTGCCCCCCAACTTCAACAACACCACAGGCAACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCTGCAGGTCGAGCCTGAGGCTTCAGCCTTCTGCACTCCCAGCTACTTCACGCTCAACTCACAGACAGCATACACCATCCCCATCATGGCCTTCGCCTTCGTCTGCCACCCCGAGGTGCTGCCCATCTATACTGAGCTCAAGGACCCCTCCAAGAAGAAGATGCAGCACATCTCCAACCTGTCCATCGCTGTCATGTACATCATGTACTTCCTGGCTGCCCTCTTCGGCTACCTCACCTTCTACAACGGGGTGGAGTCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGACGTCCTGATCCTGTGTGTGCGCGTGGCCGTGCTGACAGCAGTCACGCTCACAGTGCCCATCGTTCTGTTCCCGGTGCGCCGCGCCATCCAGCAGATGCTGTTTCCAAACCAGGAGTTCAGCTGGCTGCGGCATGTGCTTATTGCCGTTGGCCTGCTCACTTGTATCAACCTGCTGGTCATCTTTGCCCCCAACATCCTGGGCATCTTTGGGGTCATCGGTGCCACATCTGCCCCATTCCTCATCTTCATCTTCCCTGCCATCTTCTACTTCCGAATCATGCCCACGGAGAAGGAGCCTGCAAGATCCACCCCCAAAATCCTGGCCCTGTGTTTTGCTATGCTTGGCTTCTTGCTGATGACCATGAGCTTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGCCGGCATGGAGGAAACCACTAGGGTGACCCTCATCCTGTTCTGTCTACTCACCCTAGCAGCCCTGCCCAGACTCTTCAGCCCCTGCTCCCATCCAGTGGCCAGTCGGGGGAGGAGAAAGACGCGATTAACACTGTGGCATTCAGCCAGGCCCCATGTCCTCTCTGTGGAAGGTTTTTGTTCAAGAGCCAGGACCAAGGCCCTTGGGCCACTACCCTGCTAGGCTCTGGAGCTGTAGAGGCTTCCTGAACTGGGAGCAGGGTAGGGCTGTCGCCTTAGATCCCGCCCAAGCCCCTCATTCCCTCCTTGCACAGATGCATACACTGGGGCCCAGCAGCTGCCTCCTGAGGTGACACAGCCTGTAGGAACATACACAGCTGGGATCAGCCTGCAGCCATCCCCCGACCCTGCTGCTAGGCCACGGTCTGCGCCCTGGGGCCTCATCTCCCCCAGCCCACTTGTTTTCCCCCCTTTTATTCCCTAGGCCCTTTTCAGACTCCTGGGCCCTTGGATACTCTTCTCCCATCTCCCTTCACAGGATGACACCCTCCCATACCCCATAGCTGGGGCCAGCAGGTTCTGCTGAGGGTGGGGCTGGTGTAGGGACCCCCAAGAGACCCCTGTCCTGTCCCTTCACCAGTCCTGGGGAGGCTGGGACTCCCCCTGCCACAAGCCTGGGCCACAGCTCACATTCCACTGCTGGGAGAAGAAACAGGCCGAGGCCCAGAGTGGCCTGCCCCCGGGAGCCAAAGACCCCAGTGGCCACACTGGGATAGGGTGGGGAGGCTGGCAGCCCTCTTTTATAAATATTATAC</dnaseq>|
 
sequence = <dnaseq>GTTGTCGCTGTTGCAGCCGAGTTCAGCCGGGAGCAGAGCGAACCGCACCGGCCCGAGCGGAGCGCCGCACGTTCCCAACCGCGAGGCCAGACATCTGACTGTTGGTGTGAGACCAGTGCTCCTGGTGGTGTGCCCTGAGCCATGGAGGCGCCTTTGCAGACAGAGATGGTGGAGCTGGTGCCCAATGGCAAACACTCAGAGGGGCTGCTCCCGGTCATCACCCCCATGGCAGGCAACCAGAGGGTCGAGGACCCTGCACGGAGCTGTATGGAGGGCAAGAGCTTCCTACAGAAAAGTCCCAGCAAGGAGCCACACTTCACTGACTTCGAGGGGAAGACATCATTCGGGATGTCAGTGTTCAACCTCAGCAATGCCATCATGGGCAGCGGCATCCTGGGACTCGCCTATGCCATGGCCAATACGGGCATTATCCTTTTCCTGTTCCTGTTGACAGCTGTCGCCTTGCTCTCCAGCTACTCCATCCACCTGCTACTCAAGTCCTCAGGGGTCGTGGGCATCCGTGCCTATGAGCAGCTGGGCTACCGTGCCTTTGGGACCCCAGGAAAGCTGGCAGCAGCCCTGGCCATCACGCTCCAGAACATCGGAGCCATGTCCAGCTACCTGTACATCATCAAGTCTGAGCTGCCACTTGTCATACAGACCTTCCTGAACCTGGAGGAGAAAACCTCGGACTGGTACATGAACGGGAACTACCTGGTAATCCTTGTCTCTGTCACCATCATTCTGCCCCTGGCACTGATGCGGCAGCTTGGCTACCTGGGCTACTCCAGCGGCTTCTCTCTTAGCTGCATGGTGTTCTTCCTAATTGCAGTCATCTACAAAAAGTTCCACGTGCCCTGCCCACTGCCCCCCAACTTCAACAACACCACAGGCAACTTCAGCCACGTGGAGATCGTGAAGGAGAAGGTGCAGCTGCAGGTCGAGCCTGAGGCTTCAGCCTTCTGCACTCCCAGCTACTTCACGCTCAACTCACAGACAGCATACACCATCCCCATCATGGCCTTCGCCTTCGTCTGCCACCCCGAGGTGCTGCCCATCTATACTGAGCTCAAGGACCCCTCCAAGAAGAAGATGCAGCACATCTCCAACCTGTCCATCGCTGTCATGTACATCATGTACTTCCTGGCTGCCCTCTTCGGCTACCTCACCTTCTACAACGGGGTGGAGTCGGAGCTGCTGCACACCTACAGCAAGGTGGACCCGTTTGACGTCCTGATCCTGTGTGTGCGCGTGGCCGTGCTGACAGCAGTCACGCTCACAGTGCCCATCGTTCTGTTCCCGGTGCGCCGCGCCATCCAGCAGATGCTGTTTCCAAACCAGGAGTTCAGCTGGCTGCGGCATGTGCTTATTGCCGTTGGCCTGCTCACTTGTATCAACCTGCTGGTCATCTTTGCCCCCAACATCCTGGGCATCTTTGGGGTCATCGGTGCCACATCTGCCCCATTCCTCATCTTCATCTTCCCTGCCATCTTCTACTTCCGAATCATGCCCACGGAGAAGGAGCCTGCAAGATCCACCCCCAAAATCCTGGCCCTGTGTTTTGCTATGCTTGGCTTCTTGCTGATGACCATGAGCTTGAGCTTCATCATCATTGACTGGGCCTCAGGGACCAGCCGGCATGGAGGAAACCACTAGGGTGACCCTCATCCTGTTCTGTCTACTCACCCTAGCAGCCCTGCCCAGACTCTTCAGCCCCTGCTCCCATCCAGTGGCCAGTCGGGGGAGGAGAAAGACGCGATTAACACTGTGGCATTCAGCCAGGCCCCATGTCCTCTCTGTGGAAGGTTTTTGTTCAAGAGCCAGGACCAAGGCCCTTGGGCCACTACCCTGCTAGGCTCTGGAGCTGTAGAGGCTTCCTGAACTGGGAGCAGGGTAGGGCTGTCGCCTTAGATCCCGCCCAAGCCCCTCATTCCCTCCTTGCACAGATGCATACACTGGGGCCCAGCAGCTGCCTCCTGAGGTGACACAGCCTGTAGGAACATACACAGCTGGGATCAGCCTGCAGCCATCCCCCGACCCTGCTGCTAGGCCACGGTCTGCGCCCTGGGGCCTCATCTCCCCCAGCCCACTTGTTTTCCCCCCTTTTATTCCCTAGGCCCTTTTCAGACTCCTGGGCCCTTGGATACTCTTCTCCCATCTCCCTTCACAGGATGACACCCTCCCATACCCCATAGCTGGGGCCAGCAGGTTCTGCTGAGGGTGGGGCTGGTGTAGGGACCCCCAAGAGACCCCTGTCCTGTCCCTTCACCAGTCCTGGGGAGGCTGGGACTCCCCCTGCCACAAGCCTGGGCCACAGCTCACATTCCACTGCTGGGAGAAGAAACAGGCCGAGGCCCAGAGTGGCCTGCCCCCGGGAGCCAAAGACCCCAGTGGCCACACTGGGATAGGGTGGGGAGGCTGGCAGCCCTCTTTTATAAATATTATAC</dnaseq>|
 
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[[Category:Sense]][[Category:ENSG00000188338.10]]
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[[Category:Sense]][[Category:ENSG00000188338.10]][[Category:lnc-GNAT1-1]]

Revision as of 09:38, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000541861.1

Source

Gencode19

Same with

lnc-GNAT1-1:3

Classification

sense

Length

2447 nt

Genomic location

chr3+:50242692..50258400

Exon number

16

Exons

50242692..50242781,50251582..50251734,50251835..50251915,50252085..50252200,50252818..50252891,50252976..50253068,50253172..50253253,50254670..50254752,50254847..50254905,50255108..50255272,50255349..50255428,50255702..50255802,50256025..50256149,50256236..50256380,50257313..50257416,50257505..50258400

Genome context

Sequence
000001 GTTGTCGCTG TTGCAGCCGA GTTCAGCCGG GAGCAGAGCG AACCGCACCG GCCCGAGCGG AGCGCCGCAC GTTCCCAACC 000080
000081 GCGAGGCCAG ACATCTGACT GTTGGTGTGA GACCAGTGCT CCTGGTGGTG TGCCCTGAGC CATGGAGGCG CCTTTGCAGA 000160
000161 CAGAGATGGT GGAGCTGGTG CCCAATGGCA AACACTCAGA GGGGCTGCTC CCGGTCATCA CCCCCATGGC AGGCAACCAG 000240
000241 AGGGTCGAGG ACCCTGCACG GAGCTGTATG GAGGGCAAGA GCTTCCTACA GAAAAGTCCC AGCAAGGAGC CACACTTCAC 000320
000321 TGACTTCGAG GGGAAGACAT CATTCGGGAT GTCAGTGTTC AACCTCAGCA ATGCCATCAT GGGCAGCGGC ATCCTGGGAC 000400
000401 TCGCCTATGC CATGGCCAAT ACGGGCATTA TCCTTTTCCT GTTCCTGTTG ACAGCTGTCG CCTTGCTCTC CAGCTACTCC 000480
000481 ATCCACCTGC TACTCAAGTC CTCAGGGGTC GTGGGCATCC GTGCCTATGA GCAGCTGGGC TACCGTGCCT TTGGGACCCC 000560
000561 AGGAAAGCTG GCAGCAGCCC TGGCCATCAC GCTCCAGAAC ATCGGAGCCA TGTCCAGCTA CCTGTACATC ATCAAGTCTG 000640
000641 AGCTGCCACT TGTCATACAG ACCTTCCTGA ACCTGGAGGA GAAAACCTCG GACTGGTACA TGAACGGGAA CTACCTGGTA 000720
000721 ATCCTTGTCT CTGTCACCAT CATTCTGCCC CTGGCACTGA TGCGGCAGCT TGGCTACCTG GGCTACTCCA GCGGCTTCTC 000800
000801 TCTTAGCTGC ATGGTGTTCT TCCTAATTGC AGTCATCTAC AAAAAGTTCC ACGTGCCCTG CCCACTGCCC CCCAACTTCA 000880
000881 ACAACACCAC AGGCAACTTC AGCCACGTGG AGATCGTGAA GGAGAAGGTG CAGCTGCAGG TCGAGCCTGA GGCTTCAGCC 000960
000961 TTCTGCACTC CCAGCTACTT CACGCTCAAC TCACAGACAG CATACACCAT CCCCATCATG GCCTTCGCCT TCGTCTGCCA 001040
001041 CCCCGAGGTG CTGCCCATCT ATACTGAGCT CAAGGACCCC TCCAAGAAGA AGATGCAGCA CATCTCCAAC CTGTCCATCG 001120
001121 CTGTCATGTA CATCATGTAC TTCCTGGCTG CCCTCTTCGG CTACCTCACC TTCTACAACG GGGTGGAGTC GGAGCTGCTG 001200
001201 CACACCTACA GCAAGGTGGA CCCGTTTGAC GTCCTGATCC TGTGTGTGCG CGTGGCCGTG CTGACAGCAG TCACGCTCAC 001280
001281 AGTGCCCATC GTTCTGTTCC CGGTGCGCCG CGCCATCCAG CAGATGCTGT TTCCAAACCA GGAGTTCAGC TGGCTGCGGC 001360
001361 ATGTGCTTAT TGCCGTTGGC CTGCTCACTT GTATCAACCT GCTGGTCATC TTTGCCCCCA ACATCCTGGG CATCTTTGGG 001440
001441 GTCATCGGTG CCACATCTGC CCCATTCCTC ATCTTCATCT TCCCTGCCAT CTTCTACTTC CGAATCATGC CCACGGAGAA 001520
001521 GGAGCCTGCA AGATCCACCC CCAAAATCCT GGCCCTGTGT TTTGCTATGC TTGGCTTCTT GCTGATGACC ATGAGCTTGA 001600
001601 GCTTCATCAT CATTGACTGG GCCTCAGGGA CCAGCCGGCA TGGAGGAAAC CACTAGGGTG ACCCTCATCC TGTTCTGTCT 001680
001681 ACTCACCCTA GCAGCCCTGC CCAGACTCTT CAGCCCCTGC TCCCATCCAG TGGCCAGTCG GGGGAGGAGA AAGACGCGAT 001760
001761 TAACACTGTG GCATTCAGCC AGGCCCCATG TCCTCTCTGT GGAAGGTTTT TGTTCAAGAG CCAGGACCAA GGCCCTTGGG 001840
001841 CCACTACCCT GCTAGGCTCT GGAGCTGTAG AGGCTTCCTG AACTGGGAGC AGGGTAGGGC TGTCGCCTTA GATCCCGCCC 001920
001921 AAGCCCCTCA TTCCCTCCTT GCACAGATGC ATACACTGGG GCCCAGCAGC TGCCTCCTGA GGTGACACAG CCTGTAGGAA 002000
002001 CATACACAGC TGGGATCAGC CTGCAGCCAT CCCCCGACCC TGCTGCTAGG CCACGGTCTG CGCCCTGGGG CCTCATCTCC 002080
002081 CCCAGCCCAC TTGTTTTCCC CCCTTTTATT CCCTAGGCCC TTTTCAGACT CCTGGGCCCT TGGATACTCT TCTCCCATCT 002160
002161 CCCTTCACAG GATGACACCC TCCCATACCC CATAGCTGGG GCCAGCAGGT TCTGCTGAGG GTGGGGCTGG TGTAGGGACC 002240
002241 CCCAAGAGAC CCCTGTCCTG TCCCTTCACC AGTCCTGGGG AGGCTGGGAC TCCCCCTGCC ACAAGCCTGG GCCACAGCTC 002320
002321 ACATTCCACT GCTGGGAGAA GAAACAGGCC GAGGCCCAGA GTGGCCTGCC CCCGGGAGCC AAAGACCCCA GTGGCCACAC 002400
002401 TGGGATAGGG TGGGGAGGCT GGCAGCCCTC TTTTATAAAT ATTATAC
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