Difference between revisions of "ENST00000449259.1"

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sequence = <dnaseq>AGGACTTCTCCAGCTCCATTTACAGTCTGGCTCCTGGGCCTTTGGATCCCAGCAGTGTCCGAGCAGGAGCTCAAAGGACAGCCCCACCATGGGGGATCAGCCCTAGAAGCTGTCACTACATCTCCAACGGACGCAACTATTTTCCAGGAACACCGGGGGAGAGAGCCAACAACAGCACAGTGGCCCCGGACCGTGACCCTTGGACTGAAGGAACCTACAGATGTGGTTTTTTTTGGTGACATTTTACATGCAACTCCAGATTTCAAACTCTTTTGGAGAAGCAGGCAATCTGGCAACAGTCGTTTTGGATTCTCAGAAGGCAATAAAGAACAGCTGCCACCTTCCGAGGGGCACGGTGGATGCCCTGTTCTGCCAGAATTGCCAACACGTTTATCGTCTTAGACTTGCCCAAGGTGTCGCAGTTAGAGACTGCCTCCCTTATTCACGCTCCTGCCTGGTGCCCGTGGGCTTGAATTTGCTCCCCTTGGAGTGGGGTGAGGCTCTGCAGACACTTCTCATACACCTCCCCTGCAGACAGCAAGCTCCTGGAACACAAGTCACATGCATTTCATTTCCTGCTCTCTTGCTACCACCCAACATGGGCTCTCAATACATGTTGAAAGCAAGGATCAATGAATAAATGGGCAACTATCAGCTGTAGACTTGTATGTGCCAGGTATGGTGCTAGGCATGCTAGGCACCAAAAGGGCCACAGAGGTGTTACATGCCAGGATATCAGGGAGTTCATGACATAGTGAGGGAAAGAAAAAGCTTATGCAGTGTGTGTGTGAAACTTTAAGCAAACATGGTGCATAACAATAACAGGAATGACTTTGCCTGCCCCTGATGAAACTTCAGCAGGGCTATGCCCTGTCTTGCCACCTTTAGGAAACAGCAGTCTTATAGTCCTTTGCCCCTCTGAGTTACAACCACTGTCTCCTTTCAGGAGAATGCCCAGTGTTATATCATAATCAAGGCTTTGAACTTGATGTGGCATTACATGTTCTTCCATCTCCCCAGCCACCTGAGAAGGGAGATGGGGTAGCTTTTCTCTCTCACTCTCTCTCCCCCAACCCCTCCTTTTCCCACCGGCAGGTGAATGAGCTTCCTGCCCATAGGAGAAAGGGTAAAATCACAAGGTGGTGCCCTTGTCTCCAAATCTCAAGGTCCTCTGGATGGCAGGTGAGTAAAGGTGACTCTTGTGATTATGGGTGTTTTGGGTGTTCCTCAGAGATCCCCCAAACTGGGGTCTTGTCCACCATTCCCAGGACTCTGCCATGTGGAGCCATGGGAATGTGAAGTTCACCTCACACTTCCTTTCAGCTGAGGTCACCACACAGCCCCTACCAGCCCGGCTATATTGGGTGGGATTTCAGATGCCCCCACAATGGCTGCCTTGGAGACTTTCCACTGGTCCTCAAGAAGCAACAACGCTCCCCTTGCTCTGCCTTTGGTGGAGGGCAATTCCTCCTCTCTCTCTGCCTGGCCCCAGGCTGCTTCCACTGTCTCAGAAACTGGTCCCCGGATTCCCCCAGTTACAGAGAACCCTCATCAAGCTCTCAAGTGGCCACTGAAACCCAGGCTCTCTAGGCTCTGGAGTATGGAAGTGACAGCTCCATTTAATTTCTCCTTTCCTCTTGTAGGCTTACAGCATAGCACTCTCCCAAGAAATCATCCAAAAATTACCTCAACCATTCTATAGACCCCAAGCTGACCAGGGGAGGGAGGACCAAGAATCTTGAAACGTAAATACTACATTTGATGGTCTCCTTCAGACTTATTTTGGGATCTGATATCTCTTTAACAAAAATTATAAAAATTGAGGCAAAGAGAGCCCCATTTTTTATATACTGTTCTAATAAATAACAGGTACCCTTAGAAGAATGCAGACAAACACTCCTATGGAAATTTAAAGGAGCATAAGACTTCTTGCAGTATAGGGAGAGAACCAAGGAAGACTTCCTGGAGGAAATGGCCATTGAACTGGGCCTTGGACATGTGGAGGTGAGGGATGAGAGTATTCCAGATGAAGAGTCCAGCATAGGGAAGGCCCACAGGAAGGAATTGTGCTGTATTAATGCTGTCTTAGAGGCATTTCCATTGCCAGACACAGATACTCAAATTACTTCAGAGAGAGAGAGAGAGAGTATTGAAAGGGTTTCTGTGAATACCTCCACAACTGTGGTTCTCAAAGTGTAATCCCTGGGCCAGCAGCATCGGCATCACCTGGGAACTTGTTAGAAATGCAGATTCCCAGGCTGGGTGCAGTGGCTCACGCCTGTAACCCTAGCACTTTGGGAGTCCGAGGTGGGTGGATCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAAAGCCAGGTGTGGTGGCGCATGCCTGTAATCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCGGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGTAACAAGAGCGAAACTCCACCGAAGAAAGAAGAGAGAGAGAGAGGGAGAAAGAAAGAAAGGAGAAAGAGAGAAAGAAAGAAAAAGAAAGAAAGAAAAGAAAAGAAAAAAGAAAGGAAAAGAAAAGGCAAATTCACCAGAGCCTTTGAATCAGAAAAGAACCCCCAGGGGCTGGTGGTAGCAGTCCTTGCACAGGCCCTCCAGGTGATTCTCATCCAGGGAAGCCTGCGAGCCCTTGAGGTGGAATATTCTCAGGAATCCCTGAGATATGTGAAGAACTGATGGCATAGGCTATTTCTAGGGAGGAAATGGGGCTGCTGGGTGCACAGATGAGGGGAGGTGGGAGACCTCTGTAATTGTGTACCATGTGCATATATTACCTATTCAGAGAATAATAAAACAATGCGTTTAATCCCC</dnaseq>|
 
sequence = <dnaseq>AGGACTTCTCCAGCTCCATTTACAGTCTGGCTCCTGGGCCTTTGGATCCCAGCAGTGTCCGAGCAGGAGCTCAAAGGACAGCCCCACCATGGGGGATCAGCCCTAGAAGCTGTCACTACATCTCCAACGGACGCAACTATTTTCCAGGAACACCGGGGGAGAGAGCCAACAACAGCACAGTGGCCCCGGACCGTGACCCTTGGACTGAAGGAACCTACAGATGTGGTTTTTTTTGGTGACATTTTACATGCAACTCCAGATTTCAAACTCTTTTGGAGAAGCAGGCAATCTGGCAACAGTCGTTTTGGATTCTCAGAAGGCAATAAAGAACAGCTGCCACCTTCCGAGGGGCACGGTGGATGCCCTGTTCTGCCAGAATTGCCAACACGTTTATCGTCTTAGACTTGCCCAAGGTGTCGCAGTTAGAGACTGCCTCCCTTATTCACGCTCCTGCCTGGTGCCCGTGGGCTTGAATTTGCTCCCCTTGGAGTGGGGTGAGGCTCTGCAGACACTTCTCATACACCTCCCCTGCAGACAGCAAGCTCCTGGAACACAAGTCACATGCATTTCATTTCCTGCTCTCTTGCTACCACCCAACATGGGCTCTCAATACATGTTGAAAGCAAGGATCAATGAATAAATGGGCAACTATCAGCTGTAGACTTGTATGTGCCAGGTATGGTGCTAGGCATGCTAGGCACCAAAAGGGCCACAGAGGTGTTACATGCCAGGATATCAGGGAGTTCATGACATAGTGAGGGAAAGAAAAAGCTTATGCAGTGTGTGTGTGAAACTTTAAGCAAACATGGTGCATAACAATAACAGGAATGACTTTGCCTGCCCCTGATGAAACTTCAGCAGGGCTATGCCCTGTCTTGCCACCTTTAGGAAACAGCAGTCTTATAGTCCTTTGCCCCTCTGAGTTACAACCACTGTCTCCTTTCAGGAGAATGCCCAGTGTTATATCATAATCAAGGCTTTGAACTTGATGTGGCATTACATGTTCTTCCATCTCCCCAGCCACCTGAGAAGGGAGATGGGGTAGCTTTTCTCTCTCACTCTCTCTCCCCCAACCCCTCCTTTTCCCACCGGCAGGTGAATGAGCTTCCTGCCCATAGGAGAAAGGGTAAAATCACAAGGTGGTGCCCTTGTCTCCAAATCTCAAGGTCCTCTGGATGGCAGGTGAGTAAAGGTGACTCTTGTGATTATGGGTGTTTTGGGTGTTCCTCAGAGATCCCCCAAACTGGGGTCTTGTCCACCATTCCCAGGACTCTGCCATGTGGAGCCATGGGAATGTGAAGTTCACCTCACACTTCCTTTCAGCTGAGGTCACCACACAGCCCCTACCAGCCCGGCTATATTGGGTGGGATTTCAGATGCCCCCACAATGGCTGCCTTGGAGACTTTCCACTGGTCCTCAAGAAGCAACAACGCTCCCCTTGCTCTGCCTTTGGTGGAGGGCAATTCCTCCTCTCTCTCTGCCTGGCCCCAGGCTGCTTCCACTGTCTCAGAAACTGGTCCCCGGATTCCCCCAGTTACAGAGAACCCTCATCAAGCTCTCAAGTGGCCACTGAAACCCAGGCTCTCTAGGCTCTGGAGTATGGAAGTGACAGCTCCATTTAATTTCTCCTTTCCTCTTGTAGGCTTACAGCATAGCACTCTCCCAAGAAATCATCCAAAAATTACCTCAACCATTCTATAGACCCCAAGCTGACCAGGGGAGGGAGGACCAAGAATCTTGAAACGTAAATACTACATTTGATGGTCTCCTTCAGACTTATTTTGGGATCTGATATCTCTTTAACAAAAATTATAAAAATTGAGGCAAAGAGAGCCCCATTTTTTATATACTGTTCTAATAAATAACAGGTACCCTTAGAAGAATGCAGACAAACACTCCTATGGAAATTTAAAGGAGCATAAGACTTCTTGCAGTATAGGGAGAGAACCAAGGAAGACTTCCTGGAGGAAATGGCCATTGAACTGGGCCTTGGACATGTGGAGGTGAGGGATGAGAGTATTCCAGATGAAGAGTCCAGCATAGGGAAGGCCCACAGGAAGGAATTGTGCTGTATTAATGCTGTCTTAGAGGCATTTCCATTGCCAGACACAGATACTCAAATTACTTCAGAGAGAGAGAGAGAGAGTATTGAAAGGGTTTCTGTGAATACCTCCACAACTGTGGTTCTCAAAGTGTAATCCCTGGGCCAGCAGCATCGGCATCACCTGGGAACTTGTTAGAAATGCAGATTCCCAGGCTGGGTGCAGTGGCTCACGCCTGTAACCCTAGCACTTTGGGAGTCCGAGGTGGGTGGATCACCTGAGGTTGGGAGTTTGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACTAAAAATACAAAAAGCCAGGTGTGGTGGCGCATGCCTGTAATCCCAGCTGCTTGGGAGGCTGAGGCAGGAGAATCGCTTGAACCCGGGAGGCAGAGGTTGCGGTGAGCCGAGATTGCACCACTGCACTCCAGCCTGGGTAACAAGAGCGAAACTCCACCGAAGAAAGAAGAGAGAGAGAGAGGGAGAAAGAAAGAAAGGAGAAAGAGAGAAAGAAAGAAAAAGAAAGAAAGAAAAGAAAAGAAAAAAGAAAGGAAAAGAAAAGGCAAATTCACCAGAGCCTTTGAATCAGAAAAGAACCCCCAGGGGCTGGTGGTAGCAGTCCTTGCACAGGCCCTCCAGGTGATTCTCATCCAGGGAAGCCTGCGAGCCCTTGAGGTGGAATATTCTCAGGAATCCCTGAGATATGTGAAGAACTGATGGCATAGGCTATTTCTAGGGAGGAAATGGGGCTGCTGGGTGCACAGATGAGGGGAGGTGGGAGACCTCTGTAATTGTGTACCATGTGCATATATTACCTATTCAGAGAATAATAAAACAATGCGTTTAATCCCC</dnaseq>|
 
}}
 
}}
[[Category:Intergenic]][[Category:lnc-SERTAD2-3]]
+
[[Category:Intergenic]][[Category:lnc-SERTAD2-3]][[Category:NONHSAG027974]]

Revision as of 09:52, 13 October 2014

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

ENST00000449259.1

Source

Gencode19

Same with

lnc-SERTAD2-3:1,NONHSAT071138

Classification

intergenic

Length

2928 nt

Genomic location

chr2-:65128974..65132271

Exon number

2

Exons

65128974..65131754,65132125..65132271

Genome context

Sequence
000001 AGGACTTCTC CAGCTCCATT TACAGTCTGG CTCCTGGGCC TTTGGATCCC AGCAGTGTCC GAGCAGGAGC TCAAAGGACA 000080
000081 GCCCCACCAT GGGGGATCAG CCCTAGAAGC TGTCACTACA TCTCCAACGG ACGCAACTAT TTTCCAGGAA CACCGGGGGA 000160
000161 GAGAGCCAAC AACAGCACAG TGGCCCCGGA CCGTGACCCT TGGACTGAAG GAACCTACAG ATGTGGTTTT TTTTGGTGAC 000240
000241 ATTTTACATG CAACTCCAGA TTTCAAACTC TTTTGGAGAA GCAGGCAATC TGGCAACAGT CGTTTTGGAT TCTCAGAAGG 000320
000321 CAATAAAGAA CAGCTGCCAC CTTCCGAGGG GCACGGTGGA TGCCCTGTTC TGCCAGAATT GCCAACACGT TTATCGTCTT 000400
000401 AGACTTGCCC AAGGTGTCGC AGTTAGAGAC TGCCTCCCTT ATTCACGCTC CTGCCTGGTG CCCGTGGGCT TGAATTTGCT 000480
000481 CCCCTTGGAG TGGGGTGAGG CTCTGCAGAC ACTTCTCATA CACCTCCCCT GCAGACAGCA AGCTCCTGGA ACACAAGTCA 000560
000561 CATGCATTTC ATTTCCTGCT CTCTTGCTAC CACCCAACAT GGGCTCTCAA TACATGTTGA AAGCAAGGAT CAATGAATAA 000640
000641 ATGGGCAACT ATCAGCTGTA GACTTGTATG TGCCAGGTAT GGTGCTAGGC ATGCTAGGCA CCAAAAGGGC CACAGAGGTG 000720
000721 TTACATGCCA GGATATCAGG GAGTTCATGA CATAGTGAGG GAAAGAAAAA GCTTATGCAG TGTGTGTGTG AAACTTTAAG 000800
000801 CAAACATGGT GCATAACAAT AACAGGAATG ACTTTGCCTG CCCCTGATGA AACTTCAGCA GGGCTATGCC CTGTCTTGCC 000880
000881 ACCTTTAGGA AACAGCAGTC TTATAGTCCT TTGCCCCTCT GAGTTACAAC CACTGTCTCC TTTCAGGAGA ATGCCCAGTG 000960
000961 TTATATCATA ATCAAGGCTT TGAACTTGAT GTGGCATTAC ATGTTCTTCC ATCTCCCCAG CCACCTGAGA AGGGAGATGG 001040
001041 GGTAGCTTTT CTCTCTCACT CTCTCTCCCC CAACCCCTCC TTTTCCCACC GGCAGGTGAA TGAGCTTCCT GCCCATAGGA 001120
001121 GAAAGGGTAA AATCACAAGG TGGTGCCCTT GTCTCCAAAT CTCAAGGTCC TCTGGATGGC AGGTGAGTAA AGGTGACTCT 001200
001201 TGTGATTATG GGTGTTTTGG GTGTTCCTCA GAGATCCCCC AAACTGGGGT CTTGTCCACC ATTCCCAGGA CTCTGCCATG 001280
001281 TGGAGCCATG GGAATGTGAA GTTCACCTCA CACTTCCTTT CAGCTGAGGT CACCACACAG CCCCTACCAG CCCGGCTATA 001360
001361 TTGGGTGGGA TTTCAGATGC CCCCACAATG GCTGCCTTGG AGACTTTCCA CTGGTCCTCA AGAAGCAACA ACGCTCCCCT 001440
001441 TGCTCTGCCT TTGGTGGAGG GCAATTCCTC CTCTCTCTCT GCCTGGCCCC AGGCTGCTTC CACTGTCTCA GAAACTGGTC 001520
001521 CCCGGATTCC CCCAGTTACA GAGAACCCTC ATCAAGCTCT CAAGTGGCCA CTGAAACCCA GGCTCTCTAG GCTCTGGAGT 001600
001601 ATGGAAGTGA CAGCTCCATT TAATTTCTCC TTTCCTCTTG TAGGCTTACA GCATAGCACT CTCCCAAGAA ATCATCCAAA 001680
001681 AATTACCTCA ACCATTCTAT AGACCCCAAG CTGACCAGGG GAGGGAGGAC CAAGAATCTT GAAACGTAAA TACTACATTT 001760
001761 GATGGTCTCC TTCAGACTTA TTTTGGGATC TGATATCTCT TTAACAAAAA TTATAAAAAT TGAGGCAAAG AGAGCCCCAT 001840
001841 TTTTTATATA CTGTTCTAAT AAATAACAGG TACCCTTAGA AGAATGCAGA CAAACACTCC TATGGAAATT TAAAGGAGCA 001920
001921 TAAGACTTCT TGCAGTATAG GGAGAGAACC AAGGAA<